Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LMQ	4076	2023-04-20	2016-08-01	4.2	4.46	4.25	4.2	0.009	1.44	30.0	0.12	20.84	0.02	1.387	19.43	21.46	10.5	86.1	3.4	-2.56	0.80	0.76	—	4.2	0.004	0.77	0.0	0.04	16.79	0.01	1.832	30.18	0.05	8.7	90.9	0.5	-1.28	1.62	0.84	0.85	—	55841	2635	29	1612	66	0	0	logfile
✔	5LMR	4077	2023-04-20	2016-08-01	4.45	4.71	4.60	4.4	0.008	1.39	20.0	0.12	20.52	0.02	1.426	17.92	16.73	8.7	88.5	2.8	-2.16	0.79	0.74	—	4.4	0.008	0.83	0.0	0.04	16.97	0.01	1.974	37.25	0.05	9.4	90.1	0.5	-2.00	1.61	0.84	0.85	—	55662	2628	29	1609	4	0	0	logfile
✔	5LMT	4079	2023-04-20	2016-08-01	4.15	4.33	4.20	4.2	0.008	1.43	21.0	0.12	20.76	0.02	1.290	18.78	22.35	11.9	84.8	3.3	-2.73	0.77	0.76	—	4.1	0.004	0.76	0.0	0.04	16.49	0.01	1.832	27.27	0.09	8.9	90.8	0.3	-1.60	0.91	0.80	0.83	—	55776	2622	31	1612	88	0	0	logfile
✔	5LMU	4080	2023-04-20	2016-08-01	4.0	4.12	4.00	4.0	0.008	1.44	43.0	0.12	21.34	0.02	1.289	21.15	25.30	12.0	84.2	3.8	-2.57	0.73	0.78	—	4.0	0.005	0.80	0.0	0.04	17.69	0.01	1.812	26.28	0.84	7.7	91.8	0.5	-1.57	0.88	0.75	0.83	—	55195	2550	29	1612	82	0	0	logfile
✔	5LMV	4083	2023-04-21	2016-08-01	4.9	6.86	6.64	6.7	0.008	1.34	34.0	0.11	20.14	0.01	0.977	14.22	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	6.7	0.004	0.78	0.0	0.04	17.42	0.01	1.879	35.96	0.04	8.0	91.5	0.5	-1.87	2.22	0.78	0.77	—	59470	3124	30	1612	4	0	0	logfile
✔	5LNK	4093	2023-04-22	2016-08-04	3.9	3.95	—	3.9	0.007	1.05	0.0	1.04	10.85	0.01	2.038	25.44	0.32	12.6	86.9	0.5	-4.85	0.76	0.79	1.96	3.9	0.009	1.80	0.0	0.31	16.78	0.01	1.969	22.75	1.11	11.6	88.1	0.3	-1.76	0.92	0.77	0.80	0.77	63760	7918	61	0	144	0	0	logfile
✔	5LY6	4118	2023-04-20	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.003	0.77	0.0	0.04	13.91	0.00	2.223	14.60	0.00	8.3	91.5	0.2	-2.31	3.59	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	5M32	4146	2023-04-28	2016-10-14	3.8	3.96	—	3.8	0.009	1.47	12.0	0.07	13.19	0.01	0.185	19.65	3.10	14.4	83.9	1.7	-5.42	0.81	0.79	1.92	3.8	0.003	0.83	0.0	0.05	14.71	0.00	1.504	15.88	0.44	11.4	88.3	0.3	-1.95	1.49	0.83	0.81	1.30	76085	10500	52	0	8	0	0	logfile
✔	5M3L	3434	2023-04-24	2016-10-15	3.8	2.49	—	3.8	0.013	1.53	7.0	0.08	12.48	0.01	1.442	10.31	0.59	7.4	91.5	1.1	-4.86	0.32	0.76	2.04	3.6	0.004	0.76	0.0	0.04	16.98	0.00	2.103	11.84	1.08	5.3	94.5	0.2	-0.26	0.89	0.34	0.75	1.29	19007	2394	27	0	12	0	0	logfile
✔	5M5H	4155	2023-04-19	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.89	0.0	0.05	12.67	0.01	2.275	23.84	0.00	8.7	91.3	0.0	-1.45	2.20	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	5M6S	3451	2023-04-19	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✔	5MBV	3460	2023-04-26	2016-11-08	3.8	4.14	—	3.8	0.002	0.51	0.0	0.04	10.21	0.00	2.172	7.06	0.74	4.7	95.2	0.1	-3.37	0.87	0.81	0.98	3.8	0.004	0.71	0.0	0.04	13.50	0.00	2.114	12.19	0.23	3.9	96.0	0.0	1.12	0.89	0.88	0.83	1.41	24118	3014	5	0	0	0	0	logfile
✔	5MJS	3522	2023-04-28	2016-12-01	4.6	4.61	—	4.6	0.010	1.17	0.0	0.07	12.53	0.01	2.131	12.71	0.66	10.1	89.9	0.0	-4.35	0.59	0.79	—	4.6	0.003	0.78	0.0	0.05	14.38	0.01	2.084	19.28	0.07	5.6	94.4	0.0	-1.43	3.01	0.59	0.79	—	28114	3569	17	4	4	0	0	logfile
✔	5MKE	3523	2023-04-24	2016-12-04	4.3	4.44	—	4.3	0.010	1.25	8.0	0.07	13.69	0.01	1.806	56.89	0.82	18.5	81.1	0.5	-5.74	0.63	0.63	—	4.4	0.004	0.87	0.0	0.05	14.65	0.00	2.069	25.59	0.00	10.1	89.9	0.0	-3.16	0.91	0.64	0.68	—	16426	1908	11	0	34	0	0	logfile
✔	5MKF	3524	2023-04-24	2016-12-04	4.2	4.33	—	4.3	0.010	1.12	8.0	0.07	12.75	0.01	1.989	33.58	0.52	11.7	87.5	0.8	-5.40	0.68	0.70	—	4.2	0.003	0.75	0.0	0.05	13.94	0.00	2.090	16.27	0.23	6.4	93.4	0.2	-2.33	1.38	0.69	0.77	—	16620	1932	12	0	41	0	0	logfile
✘	5MLV	3527	2023-04-20	2016-12-07	4.5	4.47	—	4.4	0.010	1.21	0.0	0.06	17.43	0.01	2.060	8.31	0.20	9.0	91.0	0.0	-4.85	0.67	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56928	7218	36	6	24	0	0	logfile
✔	5MMJ	3532	2023-04-20	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	16.66	0.01	1.774	10.61	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.005	0.71	0.0	0.04	16.28	0.01	1.334	19.32	1.26	5.4	94.4	0.1	-0.53	1.60	0.91	0.85	1.05	55315	2806	31	1484	359	0	0	logfile
✔	5MP9	3534	2023-04-24	2016-12-16	4.1	4.19	—	4.1	0.013	1.32	15.0	0.07	16.20	0.01	1.139	2.82	2.49	5.8	93.2	1.0	-3.88	0.64	0.77	—	4.1	0.003	0.73	0.0	0.04	14.26	0.00	1.941	11.05	0.03	3.2	96.6	0.1	0.26	1.74	0.61	0.84	—	67883	8674	40	0	12	0	0	logfile
✔	5MPA	3535	2023-04-24	2016-12-16	4.5	4.58	—	4.5	0.026	2.51	100.0	0.13	15.51	0.02	1.354	4.50	1.95	7.7	90.6	1.8	-4.17	0.58	0.67	—	4.5	0.004	0.82	0.0	0.05	13.65	0.00	1.910	17.44	0.08	4.2	95.7	0.1	-0.37	2.29	0.58	0.81	—	67883	8674	40	0	12	0	0	logfile
✔	5MPS	3539	2023-04-21	2016-12-18	3.85	4.03	—	3.9	0.008	1.41	13.0	0.11	15.52	0.01	1.479	7.73	2.50	8.5	90.6	0.9	-2.11	0.73	0.82	1.54	3.9	0.003	0.74	0.0	0.04	16.68	0.00	1.889	16.91	0.35	5.4	94.5	0.0	0.17	0.79	0.73	0.80	1.17	58929	6718	36	339	99	0	0	logfile

• ← previous
• Page 7 of 372
• next →