Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N00	24095	2023-02-17	2021-05-24	2.27	3.74	2.49	3.3	0.004	0.55	0.0	0.05	12.23	0.00	2.138	5.26	3.44	2.9	97.1	0.0	-1.01	0.78	0.78	4.22	3.4	0.004	0.80	0.0	0.05	14.90	0.00	2.031	10.25	1.89	2.6	97.4	0.0	-0.51	1.02	0.73	0.87	3.43	5817	806	4	0	0	0	0	logfile
✔	7CR1	30444	2023-02-18	2020-08-12	3.4	3.42	—	3.5	0.012	0.73	0.0	0.04	14.92	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.53	0.0	0.03	16.48	0.00	2.133	7.37	0.60	2.2	97.8	0.0	2.94	1.18	0.58	0.81	1.83	8220	1000	8	0	4	0	0	logfile
✔	7CR7	30448	2023-02-22	2020-08-12	3.7	3.92	—	3.8	0.008	0.79	0.0	0.04	14.63	0.00	1.825	92.66	0.00	5.6	94.2	0.2	-3.89	0.64	0.69	0.59	3.8	0.004	0.90	0.0	0.04	17.53	0.00	2.011	22.09	0.59	4.2	95.8	0.0	-0.01	1.52	0.63	0.70	0.45	16136	1988	12	0	4	0	0	logfile
✔	6VX3	21428	2023-02-18	2020-02-21	3.7	3.91	—	3.9	0.009	1.11	0.0	0.05	19.48	0.00	1.829	25.97	4.02	7.4	92.6	0.0	-4.21	0.60	0.81	2.86	3.9	0.003	0.70	0.0	0.05	18.12	0.00	2.269	9.88	0.63	3.5	96.5	0.0	-1.77	1.33	0.59	0.79	2.06	7780	900	8	0	8	0	0	logfile
✔	7KVC	23046	2023-02-24	2020-11-27	4.7	4.90	—	4.8	0.005	0.84	0.0	0.05	13.91	0.00	2.224	33.61	0.00	10.7	89.3	0.0	-2.46	0.82	0.81	—	4.8	0.004	0.76	0.0	0.04	14.05	0.01	2.222	24.53	0.00	5.6	94.4	0.0	-0.15	0.55	0.81	0.79	—	21920	2660	10	0	0	0	0	logfile
✔	7W3Y	32296	2023-02-20	2021-11-26	3.0	3.45	—	3.4	0.006	0.68	0.0	0.04	13.23	0.00	2.117	13.31	0.91	6.5	93.5	0.0	-3.33	0.66	0.85	2.45	3.4	0.003	0.70	0.0	0.04	16.40	0.01	2.234	11.03	1.82	3.7	96.3	0.0	0.56	0.81	0.66	0.85	2.10	12088	1492	4	0	0	0	0	logfile
✘	7XQi	33397	2023-02-19	2022-05-07	3.7	4.27	3.41	4.0	0.006	0.72	0.0	0.04	14.16	0.00	2.304	5.68	2.27	2.1	97.9	0.0	-2.27	0.76	0.86	3.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9582	1176	6	0	0	0	0	logfile
✔	7F6V	31482	2023-02-17	2021-06-25	3.66	4.27	—	4.2	0.005	0.77	0.0	0.05	14.14	0.00	2.356	10.62	0.00	6.8	93.2	0.0	0.27	0.60	0.78	1.08	4.2	0.003	0.65	0.0	0.03	17.58	0.00	2.249	9.40	0.18	4.4	95.6	0.0	4.28	0.84	0.60	0.77	0.75	5314	626	4	0	2	0	0	logfile
✔	7oZU	13135	2023-02-18	2021-06-28	3.3	3.27	3.22	3.4	0.007	0.52	0.0	0.04	12.44	0.00	2.218	6.22	0.00	3.1	96.9	0.0	0.39	0.62	0.79	3.13	3.4	0.002	0.44	0.0	0.04	14.77	0.00	2.075	7.07	0.23	2.0	98.0	0.0	0.75	1.90	0.75	0.85	3.04	8408	991	6	22	2	0	0	logfile
✔	7TQV	26073	2023-02-22	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	7.79	0.00	2.162	5.00	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.003	0.56	0.0	0.04	12.72	0.00	2.213	8.13	0.33	3.7	96.3	0.0	-0.50	1.51	0.73	0.76	2.12	17792	2083	8	66	0	0	0	logfile
✔	7CR0	30443	2023-02-18	2020-08-12	3.1	3.35	—	3.4	0.005	0.63	0.0	0.04	14.38	0.00	2.212	5.87	0.00	4.0	96.0	0.0	-4.99	0.58	0.82	3.75	3.4	0.003	0.59	0.0	0.03	15.47	0.00	2.219	7.51	0.12	3.4	96.6	0.0	2.81	0.56	0.57	0.81	2.63	8188	1004	4	0	0	0	0	logfile
✔	6Z3Y	11066	2023-02-17	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.32	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.003	0.83	0.0	0.05	14.87	0.00	2.036	17.43	0.31	8.8	91.2	0.0	-0.62	0.72	0.59	0.71	0.99	6131	771	2	0	0	0	0	logfile
✔	6Z3Z	11067	2023-02-17	2020-05-22	3.19	3.90	—	3.6	0.003	0.62	0.0	0.04	13.78	0.00	2.198	8.96	0.31	6.4	93.6	0.0	-0.26	0.62	0.69	0.75	3.7	0.005	0.87	0.0	0.05	16.06	0.00	2.088	21.43	0.62	8.6	91.4	0.0	-0.21	0.70	0.64	0.73	0.82	6115	769	2	0	0	0	0	logfile
✔	6K4M	9915	2023-02-27	2019-05-24	4.5	7.82	—	7.8	0.006	1.01	0.0	0.05	17.74	0.00	2.258	13.35	0.54	1.8	98.2	0.0	-4.61	0.68	0.84	—	7.8	0.004	0.90	0.0	0.04	15.28	0.00	2.080	24.55	0.15	2.6	97.4	0.0	-0.40	1.59	0.70	0.86	—	31508	3790	48	0	36	0	0	logfile
✔	7CR4	30447	2023-02-21	2020-08-12	3.9	4.24	—	3.9	0.008	0.65	0.0	0.04	13.14	0.00	1.833	102.61	0.00	4.6	95.4	0.0	-2.89	0.59	0.76	0.53	3.9	0.004	0.87	1.0	0.04	16.37	0.00	2.127	26.14	0.60	2.9	97.1	0.0	0.40	1.42	0.57	0.76	0.47	15988	1968	12	0	4	0	0	logfile
✔	8B1U	15805	2023-02-24	2022-09-12	3.8	3.92	3.70	3.8	0.002	0.51	0.0	0.04	12.03	0.00	2.172	5.77	1.51	1.1	98.9	0.0	-0.66	0.77	0.78	1.88	3.8	0.003	0.62	0.0	0.04	16.44	0.00	2.166	9.54	0.16	2.2	97.8	0.0	0.87	1.38	0.79	0.82	2.03	24127	2886	6	51	2	0	0	logfile
✔	7URA	26707	2023-02-17	2022-04-21	3.11	3.40	3.12	3.3	0.020	1.12	0.0	0.78	16.47	0.00	2.051	11.83	0.00	4.2	95.8	0.0	-2.18	0.59	0.85	3.83	3.3	0.002	1.08	0.0	0.12	16.33	0.00	2.219	5.44	0.36	3.4	96.6	0.0	1.10	0.41	0.57	0.85	2.59	5400	658	4	0	6	0	0	logfile
✔	7W3X	32295	2023-02-18	2021-11-26	3.21	2.33	3.15	2.2	0.003	0.63	0.0	0.05	14.35	0.00	2.190	8.18	0.00	9.0	91.0	0.0	-2.95	0.77	0.79	3.38	2.2	0.003	0.66	0.0	0.05	16.41	0.00	2.139	11.90	0.25	8.0	92.0	0.0	-2.63	0.39	0.78	0.81	2.62	7429	893	7	0	31	0	0	logfile
✔	8B1T	15804	2023-02-24	2022-09-12	3.4	3.56	3.57	3.4	0.003	0.54	0.0	0.04	12.73	0.00	2.065	6.08	1.44	1.1	98.9	0.0	-0.96	0.81	0.83	2.60	3.4	0.005	0.59	0.0	0.04	16.16	0.00	1.942	8.22	0.12	2.1	97.9	0.0	0.85	1.29	0.82	0.86	2.42	23986	2869	6	51	2	0	0	logfile
✔	5X6o	6708	2023-02-23	2017-02-22	3.9	4.03	—	3.9	0.007	1.01	4.0	0.06	11.26	0.00	1.863	21.05	1.64	15.8	82.1	2.2	-5.44	0.60	0.72	1.68	3.9	0.003	0.79	0.0	0.04	14.79	0.00	2.177	10.09	0.29	8.4	90.3	1.3	-0.74	0.82	0.62	0.76	0.97	19309	2701	2	0	0	0	0	logfile

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