Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WX6	21951	2021-08-10	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.003	0.52	0.0	0.03	16.24	0.00	2.012	2.81	0.69	1.2	98.8	0.0	4.76	0.53	0.78	0.89	7.38	68332	4128	56	0	8	2420	32664	logfile
✔	7BRM	30160	2021-08-09	2020-03-29	3.6	3.70	3.49	3.7	0.011	0.84	0.0	0.05	13.83	0.00	2.128	16.83	0.00	14.1	85.9	0.0	-3.24	0.75	0.86	2.91	3.7	0.003	0.64	0.0	0.04	15.45	0.00	2.098	12.75	0.23	7.7	92.3	0.0	-0.25	0.64	0.74	0.84	2.34	20277	2619	18	0	0	0	0	logfile
✔	6ZP5	11336	2021-08-09	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.00	0.012	14.01	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.004	0.70	0.0	0.11	14.92	0.00	0.792	10.03	0.24	3.7	96.3	0.0	0.24	0.71	0.83	0.85	2.15	23615	2861	33	0	92	0	0	logfile
✘	6ZoW	11328	2021-08-09	2020-07-07	3.0	3.81	3.10	3.4	0.006	0.71	0.0	0.05	13.52	0.00	1.991	12.12	0.52	2.9	97.1	0.0	-0.91	0.79	0.75	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23534	2862	35	0	92	4	0	logfile
✔	6VQ8	21319	2021-08-09	2020-02-04	3.9	4.52	—	4.2	0.009	0.97	0.0	0.06	10.70	0.00	2.220	3.40	0.78	2.5	97.3	0.2	0.61	0.78	0.73	1.33	4.2	0.006	0.87	0.0	0.05	14.40	0.01	2.051	19.15	0.48	4.1	95.9	0.0	0.94	2.80	0.81	0.81	1.06	60714	8451	35	0	1	0	0	logfile
✔	6WLB	21820	2021-08-10	2020-04-19	3.5	3.89	—	3.8	0.004	0.56	0.0	0.06	13.08	0.00	2.123	6.72	0.16	4.2	95.8	0.0	1.33	0.66	0.78	1.05	3.8	0.003	0.58	0.0	0.06	14.70	0.01	1.989	7.61	0.32	5.7	94.3	0.0	1.22	1.24	0.64	0.79	1.55	34441	2160	6	0	15	0	16960	logfile
✔	6Y97	10733	2021-08-07	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.73	0.0	0.05	13.38	0.01	2.123	16.16	0.00	7.4	92.6	0.0	0.39	1.70	0.71	0.72	—	4366	564	4	0	0	0	0	logfile
✔	6SGT	10184	2021-08-11	2019-08-05	3.46	3.54	3.37	3.5	0.004	0.72	0.0	0.04	12.56	0.00	2.205	8.14	0.29	4.5	95.4	0.1	-4.71	0.65	0.79	2.46	3.5	0.003	0.61	0.0	0.04	15.71	0.00	1.918	7.40	0.33	3.5	96.5	0.0	-0.10	2.29	0.67	0.82	2.18	52180	3408	5	0	0	0	26299	logfile
✔	6Y50	10688	2021-08-08	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.78	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.011	0.88	0.0	0.05	10.10	0.01	1.980	11.79	0.00	15.0	84.9	0.1	-2.34	0.71	0.72	0.74	—	14916	2537	10	50	3	0	0	logfile
✔	6XBD	22116	2021-08-08	2020-06-05	3.05	3.71	—	3.6	0.003	0.63	0.0	0.04	12.15	0.00	2.104	8.87	0.06	3.5	96.5	0.0	-2.47	0.78	0.85	2.38	3.5	0.004	0.63	0.0	0.04	14.73	0.00	2.111	7.86	0.24	3.3	96.7	0.0	0.60	0.58	0.79	0.87	1.88	17433	2084	15	0	322	0	0	logfile
✔	6oQV	20171	2021-08-11	2019-04-29	3.3	3.60	—	3.4	0.010	0.94	1.0	0.05	14.75	0.00	1.740	4.95	2.95	4.1	95.9	0.0	-2.77	0.76	0.85	3.07	3.4	0.003	0.69	0.0	0.04	15.79	0.00	1.992	8.77	0.44	2.6	97.4	0.0	0.91	2.00	0.80	0.88	2.39	36971	4851	28	0	12	0	0	logfile
✔	6Y5V	10704	2021-08-08	2020-02-25	4.08	4.18	4.07	4.2	0.004	0.66	0.0	0.04	11.31	0.00	2.232	7.24	0.29	4.0	96.0	0.0	-2.25	0.65	0.84	—	4.2	0.003	0.67	0.0	0.04	12.67	0.00	2.136	10.56	0.00	3.3	96.7	0.0	0.94	1.83	0.65	0.83	—	13400	1758	6	0	8	0	0	logfile
✔	6W4S	21539	2021-08-07	2020-03-11	3.2	3.63	—	3.6	0.004	0.57	0.0	0.04	14.38	0.00	2.176	7.90	4.45	5.6	94.4	0.0	-1.13	0.61	0.85	2.37	3.6	0.004	0.72	0.0	0.04	15.32	0.01	2.183	10.10	0.19	4.1	95.9	0.0	1.85	0.48	0.60	0.85	2.11	4986	650	3	0	0	0	0	logfile
✔	6VoA	21259	2021-08-09	2020-01-30	4.0	4.24	—	4.1	0.004	0.83	8.0	0.06	14.09	0.00	1.107	13.72	1.57	8.8	90.7	0.5	-3.28	0.69	0.58	—	4.1	0.004	0.80	0.0	0.05	16.13	0.01	2.072	15.92	0.43	8.5	91.4	0.1	-1.56	1.57	0.77	0.70	—	26824	3958	9	0	0	0	0	logfile
✔	6SK0	10219	2021-08-07	2019-08-14	2.3	2.29	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.70	0.0	0.05	17.22	0.00	2.142	10.94	0.81	3.9	96.1	0.0	-1.31	1.50	0.79	0.89	6.82	5826	792	3	0	0	0	0	logfile
✔	6SGU	10185	2021-08-11	2019-08-05	3.27	3.39	3.20	3.3	0.005	0.72	0.0	0.04	12.69	0.00	2.197	8.55	0.22	3.9	96.0	0.0	-4.40	0.67	0.76	1.67	3.3	0.004	0.62	0.0	0.04	15.74	0.00	1.953	6.82	0.33	3.9	96.1	0.0	0.22	1.07	0.73	0.85	2.36	52169	3407	5	0	0	0	26294	logfile
✔	7JYi	22526	2021-08-07	2020-08-30	3.4	3.52	—	3.5	0.008	0.75	0.0	0.05	16.05	0.00	2.104	14.04	5.45	10.3	89.2	0.5	-4.54	0.43	0.84	2.04	3.5	0.004	0.69	0.0	0.04	16.75	0.00	2.171	9.15	0.21	8.5	91.3	0.2	-1.89	1.29	0.42	0.86	2.06	8807	1152	4	0	0	0	0	logfile
✔	6KPK	0749	2021-08-09	2019-08-15	2.3	3.44	—	3.0	0.006	0.70	0.0	0.06	12.55	0.00	2.127	4.74	0.37	5.5	94.5	0.0	-3.66	0.84	0.88	4.21	3.0	0.005	0.74	1.0	0.13	14.32	0.00	1.952	4.79	0.81	3.5	96.5	0.0	1.00	0.77	0.85	0.90	4.24	62209	3936	24	0	24	0	31225	logfile
✔	6KQ4	0750	2021-08-09	2019-08-16	2.3	3.29	—	3.0	0.007	0.65	0.0	0.06	13.31	0.00	2.167	3.60	0.37	4.3	95.7	0.0	-3.29	0.85	0.87	4.30	2.9	0.005	0.74	1.0	0.13	15.78	0.00	1.998	4.93	0.31	3.9	96.1	0.0	1.30	0.79	0.86	0.90	4.23	62206	3936	24	0	24	0	31222	logfile
✔	6KPA	0742	2021-08-09	2019-08-15	2.75	3.85	—	3.3	0.016	0.86	0.0	0.06	14.21	0.00	1.899	6.69	0.00	6.7	93.3	0.0	-4.52	0.87	0.88	3.48	3.3	0.005	0.80	1.0	0.13	16.04	0.00	1.874	6.07	0.34	3.6	96.4	0.0	0.67	0.89	0.88	0.90	3.61	62845	3936	24	0	48	0	31225	logfile

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