Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WHU	21676	2023-08-17	2020-04-08	3.93	4.34	—	4.2	0.009	0.94	0.0	0.05	15.07	0.00	2.095	18.95	0.72	18.0	81.8	0.2	-4.87	0.69	0.75	1.46	4.2	0.004	0.76	0.0	0.05	16.15	0.00	2.133	11.93	0.68	11.5	88.5	0.0	-1.64	0.55	0.73	0.81	1.57	23368	3120	10	0	16	0	0	logfile
✔	7XXH	33503	2023-08-10	2022-05-30	2.9	3.03	2.85	3.1	0.005	0.71	0.0	0.04	12.30	0.00	2.309	9.33	0.11	2.0	98.0	0.0	0.23	0.56	0.68	1.84	3.1	0.003	0.69	0.0	0.04	15.73	0.00	2.142	13.81	3.61	4.2	95.8	0.0	-0.02	0.61	0.59	0.75	2.04	8847	1158	6	0	1	0	0	logfile
✔	7TJW	25934	2023-08-17	2022-01-17	4.0	3.71	4.05	3.8	0.003	0.64	0.0	0.05	12.06	0.00	1.855	2.42	0.00	2.2	97.8	0.0	0.19	0.61	0.79	—	3.8	0.004	0.68	0.0	0.04	15.86	0.00	1.854	9.91	0.37	3.7	96.3	0.0	0.51	0.64	0.62	0.80	—	22500	3097	12	0	10	0	0	logfile
✔	7TTH	26115	2023-08-12	2022-02-01	3.25	3.81	—	3.7	0.004	0.70	0.0	0.05	11.66	0.00	2.232	7.80	0.00	4.5	95.5	0.0	-0.01	0.55	0.71	1.99	3.7	0.003	0.63	0.0	0.04	14.09	0.00	2.132	6.36	0.33	4.4	95.6	0.0	0.70	0.54	0.65	0.79	1.73	12698	1750	8	0	10	0	0	logfile
✔	8FY9	29561	2023-08-12	2023-01-25	3.1	3.32	3.15	3.3	0.003	0.52	0.0	0.04	17.41	0.00	2.209	11.22	0.00	3.1	96.9	0.0	0.86	0.70	0.77	2.18	3.3	0.003	0.54	0.0	0.04	18.88	0.00	2.215	11.26	0.20	2.9	97.1	0.0	1.28	1.17	0.69	0.78	2.15	10742	1228	8	56	0	0	0	logfile
✔	7E8i	31020	2023-08-14	2021-03-01	3.1	3.57	—	3.5	0.005	0.74	0.0	0.05	24.79	0.00	2.216	7.94	0.00	3.3	96.7	0.0	-2.84	0.74	0.78	2.22	3.5	0.005	0.63	0.0	0.04	26.84	0.00	2.099	9.11	0.60	3.6	96.4	0.0	0.62	0.54	0.75	0.80	2.12	15271	1176	12	290	0	0	0	logfile
✔	7WiT	32535	2023-08-10	2022-01-04	3.21	3.87	3.47	3.8	0.007	0.56	0.0	0.04	11.00	0.00	2.271	4.78	3.11	3.3	96.7	0.0	-0.91	0.61	0.77	2.46	3.8	0.003	0.52	0.0	0.04	13.70	0.00	2.182	5.35	0.00	2.1	97.9	0.0	1.74	0.65	0.62	0.79	1.65	8109	1133	1	0	2	0	0	logfile
✔	7Y83	33679	2023-08-14	2022-06-22	2.93	3.17	3.05	3.2	0.004	0.57	0.0	0.04	19.42	0.00	1.923	18.19	5.52	3.5	96.5	0.0	0.07	0.66	0.79	2.46	3.2	0.003	0.59	0.0	0.04	19.49	0.00	1.951	18.16	6.56	3.0	97.0	0.0	0.18	0.27	0.63	0.79	2.46	16300	1861	5	59	5	0	0	logfile
✔	6VAK	21141	2023-08-17	2019-12-17	3.48	3.85	—	3.8	0.004	0.77	0.0	0.04	14.36	0.00	2.047	7.47	2.96	8.2	91.8	0.0	-2.80	0.73	0.81	3.28	3.8	0.002	0.58	0.0	0.03	16.38	0.00	2.190	5.71	0.72	5.9	94.1	0.0	2.31	0.55	0.70	0.82	2.80	22781	2992	11	0	0	0	0	logfile
✔	7SXo	25502	2023-08-18	2021-11-24	3.3	3.41	—	3.4	0.002	0.65	1.0	0.04	14.38	0.00	2.092	8.41	0.07	5.0	94.9	0.1	-0.70	0.77	0.80	2.18	3.4	0.005	0.67	1.0	0.04	15.85	0.00	1.927	9.77	0.41	5.9	94.0	0.1	-0.74	0.40	0.81	0.86	2.25	24894	3160	13	0	19	0	0	logfile
✔	7JSH	22454	2023-08-10	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7CRH	30452	2023-08-14	2020-08-13	3.3	3.36	—	3.6	0.004	0.59	0.0	0.04	13.74	0.00	1.798	10.41	1.40	3.2	96.8	0.0	-2.77	0.57	0.79	1.92	3.4	0.003	0.73	0.0	0.04	16.00	0.00	2.155	11.54	0.47	4.4	95.6	0.0	-0.56	0.68	0.58	0.82	1.54	8068	1035	5	0	1	0	0	logfile
✔	7MKi	23895	2023-08-21	2021-04-23	3.5	3.43	3.54	3.5	0.008	0.76	0.0	0.05	16.91	0.00	2.170	6.42	5.35	7.1	92.8	0.0	-1.84	0.68	0.80	2.21	3.5	0.002	0.54	0.0	0.04	17.58	0.00	2.155	7.02	0.19	5.1	94.9	0.0	-0.22	0.35	0.71	0.80	1.59	30919	3676	10	96	6	0	0	logfile
✔	7XD6	33137	2023-08-11	2022-03-26	2.84	3.25	2.83	3.0	0.005	0.74	0.0	0.04	15.28	0.00	1.975	1.30	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.0	0.005	0.66	0.0	0.04	16.14	0.00	1.883	7.41	0.00	0.0	0.0	0.0	—	1.32	0.88	0.89	—	9843	0	3	459	29	0	0	logfile
✔	7Ri4	24473	2023-08-12	2021-07-19	3.4	3.80	—	3.7	0.003	0.74	0.0	0.04	17.06	0.00	2.238	9.59	3.70	13.8	86.0	0.2	-5.39	0.71	0.77	0.92	3.7	0.004	0.79	0.0	0.05	17.86	0.00	2.141	12.80	0.77	17.2	82.7	0.1	-3.47	0.52	0.72	0.81	1.76	12248	1578	6	0	0	0	0	logfile
✔	7L2P	23136	2023-08-15	2020-12-17	2.6	2.86	2.54	2.9	0.006	0.97	0.0	0.27	12.46	0.00	2.080	1.42	0.76	6.5	93.4	0.1	0.13	0.60	0.79	3.53	2.9	0.005	0.66	0.0	0.04	15.94	0.00	2.164	7.90	1.82	6.8	93.1	0.0	0.81	3.17	0.61	0.84	3.61	18448	2234	8	0	9	0	0	logfile
✔	6Wi0	21681	2023-08-21	2020-04-08	4.27	4.76	—	4.5	0.005	0.77	0.0	0.06	13.42	0.00	2.134	16.88	0.60	10.2	89.6	0.2	-4.55	0.62	0.68	—	4.5	0.003	0.66	0.0	0.04	12.75	0.00	2.108	8.84	0.00	7.0	92.9	0.1	-1.06	0.48	0.71	0.78	—	21964	3112	10	0	10	0	0	logfile
✔	7TJU	25932	2023-08-17	2022-01-17	3.3	3.57	3.40	3.5	0.002	0.59	0.0	0.05	11.98	0.00	2.070	2.00	0.00	1.4	98.6	0.0	0.36	0.77	0.84	3.19	3.5	0.003	0.54	0.0	0.04	14.39	0.00	1.972	6.02	0.18	1.9	98.1	0.0	0.89	0.52	0.79	0.87	2.63	22687	3102	11	0	7	0	0	logfile
✔	7o6P	12739	2023-08-10	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.002	0.47	0.0	0.04	13.52	0.00	2.251	5.96	0.00	2.0	98.0	0.0	2.22	0.39	0.90	0.92	5.36	8276	1022	8	0	0	268	0	logfile
✔	7URG	26712	2023-08-09	2022-04-21	3.46	3.69	3.49	3.7	0.002	0.50	0.0	0.04	15.44	0.00	2.229	4.69	0.00	3.5	96.5	0.0	0.73	0.69	0.75	2.59	3.7	0.004	0.59	0.0	0.04	16.80	0.00	2.242	5.34	0.15	5.8	94.2	0.0	-0.19	0.50	0.74	0.79	2.15	6260	802	4	0	2	0	0	logfile

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