Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CRQ	30456	2023-04-29	2020-08-14	3.15	3.31	—	3.2	0.006	0.75	0.0	0.04	26.16	0.00	1.131	7.73	1.36	8.7	91.2	0.1	-5.19	0.75	0.81	2.87	3.2	0.003	0.61	0.0	0.04	26.73	0.00	2.090	6.42	0.19	7.1	92.9	0.0	-2.78	1.15	0.76	0.81	2.41	16633	1226	14	336	8	0	0	logfile
✔	7TQV	26073	2023-04-24	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	7.79	0.00	2.162	5.00	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.003	0.56	0.0	0.04	12.72	0.00	2.213	8.13	0.33	3.7	96.3	0.0	-0.50	1.51	0.73	0.76	2.12	17792	2083	8	66	0	0	0	logfile
✘	7B5P	12043	2023-04-26	2020-12-05	3.2	3.34	—	3.3	0.009	1.00	1.0	0.06	13.44	0.00	1.894	24.69	1.78	8.9	89.6	1.4	-2.84	0.70	0.83	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22527	3013	3	0	0	0	0	logfile
✘	8EY2	28666	2023-04-20	2022-10-26	3.5	3.71	3.55	3.8	0.003	0.60	0.0	0.04	13.04	0.00	2.149	14.08	0.00	5.8	94.2	0.0	-0.29	0.78	0.80	2.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4908	634	4	0	0	0	0	logfile
✔	8E55	27903	2023-04-22	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✔	6YSZ	10911	2023-04-23	2020-04-23	3.6	2.67	—	3.8	0.004	0.56	0.0	0.04	15.54	0.00	2.295	11.00	0.38	2.9	97.1	0.0	-1.45	0.80	0.81	1.22	3.9	0.003	0.58	0.0	0.04	17.83	0.00	2.145	9.80	0.81	1.2	98.8	0.0	1.97	1.02	0.80	0.79	1.01	15192	1896	6	0	0	0	0	logfile
✔	7CKW	30392	2023-04-23	2020-07-20	3.22	3.34	—	3.3	0.002	0.48	0.0	0.04	13.74	0.00	2.178	15.84	1.74	3.0	97.0	0.0	-3.30	0.58	0.71	1.74	3.3	0.003	0.67	0.0	0.04	16.11	0.00	2.036	20.45	0.70	4.6	95.4	0.0	-0.85	0.67	0.62	0.78	1.82	8103	1035	5	0	2	0	0	logfile
✔	7XN3	33309	2023-04-23	2022-04-27	2.9	3.05	2.92	3.0	0.006	0.62	0.0	0.05	13.52	0.00	2.174	6.06	2.37	7.9	92.1	0.0	-0.76	0.72	0.84	3.66	3.0	0.003	0.58	0.0	0.05	14.71	0.00	2.205	5.95	0.72	6.6	93.4	0.0	0.25	0.37	0.74	0.87	3.52	14016	1830	18	0	12	54	0	logfile
✘	7oE7	12861	2023-04-22	2021-05-01	3.73	3.95	3.97	3.7	0.002	0.53	0.0	0.04	14.33	0.00	2.084	3.86	0.00	6.8	93.2	0.0	-1.48	0.79	0.64	0.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11116	1382	1	0	2	0	0	logfile
✔	7XN7	33313	2023-04-23	2022-04-28	3.1	3.76	3.04	3.1	0.004	0.50	0.0	0.04	14.34	0.00	2.019	6.56	0.00	2.2	97.8	0.0	1.50	0.80	0.70	1.58	3.1	0.003	0.55	0.0	0.04	15.60	0.00	2.073	9.02	0.06	2.6	97.4	0.0	1.54	0.51	0.85	0.85	1.58	66076	7929	33	114	11	0	0	logfile
✔	7AZP	11950	2023-04-28	2020-11-17	3.5	3.84	3.46	3.6	0.004	0.62	0.0	0.04	13.41	0.00	2.210	10.65	0.71	3.3	96.7	0.0	-2.29	0.89	0.86	0.66	3.6	0.007	0.75	0.0	0.05	14.85	0.00	2.172	14.54	0.54	4.3	95.7	0.0	0.48	1.22	0.89	0.86	1.01	27391	3675	7	0	0	0	0	logfile
✔	6LW1	30002	2023-04-22	2020-02-06	2.8	2.98	—	3.1	0.010	1.05	0.0	0.07	17.53	0.00	2.119	11.43	7.10	10.3	89.2	0.5	-3.85	0.67	0.80	2.54	3.1	0.003	0.62	0.0	0.05	17.99	0.00	2.108	10.95	4.74	5.9	93.8	0.3	-2.06	0.48	0.62	0.78	2.80	12412	1526	4	0	2	0	0	logfile
✔	6VPC	21308	2023-04-23	2020-02-03	3.2	3.51	3.17	3.2	0.002	0.56	0.0	0.04	16.94	0.00	2.121	5.85	1.58	2.2	97.8	0.0	-1.99	0.83	0.79	1.63	3.2	0.003	0.62	0.0	0.04	17.92	0.00	2.080	7.75	0.14	2.8	97.2	0.0	0.41	1.24	0.85	0.83	1.95	16309	1633	9	154	5	0	0	logfile
✔	7URE	26710	2023-04-20	2022-04-21	3.19	3.51	3.25	3.4	0.017	0.78	0.0	0.78	14.25	0.00	2.118	9.65	0.00	5.7	94.3	0.0	-2.27	0.60	0.85	3.70	3.4	0.002	1.07	0.0	0.12	15.47	0.00	2.071	5.85	0.69	3.8	96.2	0.0	0.79	0.93	0.59	0.85	3.00	5450	678	6	0	3	0	0	logfile
✔	8CSZ	26976	2023-04-21	2022-05-13	3.2	3.55	3.13	3.3	0.005	0.67	0.0	0.04	19.39	0.00	1.962	11.72	0.00	4.9	95.1	0.0	-0.97	0.84	0.86	4.03	3.3	0.004	0.57	0.0	0.03	19.22	0.00	1.980	9.85	0.24	4.9	95.1	0.0	-0.14	1.12	0.84	0.88	3.57	8948	494	5	236	3	0	0	logfile
✘	8CVP	27012	2023-04-21	2022-05-18	3.4	3.75	3.50	3.7	0.003	0.58	0.0	0.04	13.05	0.00	2.231	4.87	0.12	6.1	93.8	0.1	-1.69	0.69	0.74	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10112	1484	2	0	1	0	0	logfile
✔	7WQ4	32699	2023-04-20	2022-01-24	2.6	2.77	—	2.9	0.007	0.61	0.0	0.05	8.04	0.00	1.399	6.69	0.45	0.8	99.2	0.0	-1.07	0.51	0.70	3.03	2.8	0.003	0.56	0.0	0.04	15.87	0.00	2.151	6.33	2.82	1.9	98.1	0.0	0.90	1.28	0.64	0.83	3.61	8290	1048	7	0	2	0	0	logfile
✔	7XSZ	33437	2023-04-28	2022-05-15	3.4	3.55	3.21	3.0	0.005	0.59	0.0	0.05	16.80	0.00	1.896	8.21	0.01	2.3	97.7	0.0	1.40	0.78	0.79	1.32	3.0	0.003	0.55	0.0	0.04	18.40	0.00	2.129	10.10	0.12	2.6	97.3	0.0	1.45	1.67	0.79	0.82	1.30	76548	8665	41	341	11	0	0	logfile
✔	7MU1	24001	2023-04-27	2021-05-14	3.3	3.25	—	3.2	0.006	0.65	0.0	0.04	13.49	0.00	2.078	13.28	0.43	3.4	96.6	0.0	0.09	0.86	0.89	3.34	3.2	0.002	0.53	0.0	0.04	15.01	0.00	2.317	7.87	0.00	4.3	95.7	0.0	1.05	0.29	0.86	0.91	3.05	130320	15840	60	0	60	0	0	logfile
✔	6Y1Z	10673	2023-04-24	2020-02-14	2.82	3.48	—	3.3	0.014	0.69	0.0	0.28	13.14	0.00	2.325	3.51	2.49	2.4	97.6	0.0	-1.37	0.66	0.79	2.66	3.3	0.003	0.88	0.0	0.12	15.11	0.00	2.098	4.53	2.71	2.7	97.3	0.0	1.06	0.56	0.59	0.72	2.56	16610	1930	20	0	35	0	0	logfile

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