Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P2Y	13174	2022-07-07	2021-07-06	3.1	3.84	—	3.5	0.004	0.70	0.0	0.04	11.76	0.00	2.088	10.48	0.08	3.8	96.2	0.0	0.12	0.82	0.87	2.60	3.5	0.003	0.65	0.0	0.04	13.51	0.00	1.894	8.27	0.26	3.9	96.1	0.0	0.66	0.98	0.82	0.88	2.13	37172	4904	30	0	9	3	0	logfile
✔	7MK2	23884	2022-07-03	2021-04-21	3.8	3.60	3.84	3.6	0.004	0.69	0.0	0.04	14.23	0.00	2.228	9.06	0.00	7.7	92.3	0.0	-1.60	0.63	0.77	0.81	3.6	0.003	0.67	0.0	0.04	16.12	0.00	2.221	9.52	0.17	5.4	94.6	0.0	-0.99	1.43	0.63	0.77	0.84	5333	708	4	0	2	0	0	logfile
✔	7QPG	14120	2022-07-03	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	7.04	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.4	0.006	0.80	0.0	0.04	13.15	0.00	1.840	14.65	0.12	3.1	96.9	0.0	1.00	0.83	0.87	0.74	0.32	57164	7156	6	0	0	0	0	logfile
✘	7NAK	24272	2022-07-04	2021-06-21	2.9	3.09	3.03	3.1	0.005	0.60	0.0	0.04	13.53	0.00	1.319	6.18	0.00	5.6	94.4	0.0	-0.76	0.68	0.73	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18303	1120	16	0	8	0	8967	logfile
✔	7RYC	24733	2022-07-03	2021-08-24	2.9	2.34	—	3.0	0.006	0.86	0.0	0.05	13.76	0.00	2.198	5.74	0.38	4.9	95.1	0.0	-2.98	0.80	0.77	2.64	3.0	0.003	0.65	0.0	0.04	15.74	0.00	2.206	4.11	2.12	3.0	97.0	0.0	-0.14	0.47	0.81	0.79	2.51	8277	1125	6	0	2	0	0	logfile
✔	7R10	14226	2022-07-03	2022-02-02	4.0	4.22	3.99	3.9	0.003	0.50	0.0	0.04	13.13	0.00	2.131	6.97	0.47	3.6	96.4	0.0	0.67	0.90	0.83	—	3.9	0.003	0.53	0.0	0.04	14.30	0.00	2.116	8.94	0.09	3.3	96.7	0.0	0.52	0.51	0.90	0.84	—	9823	1210	4	0	8	0	0	logfile
✔	7PXA	13695	2022-07-07	2021-10-08	2.8	2.56	—	2.8	0.002	0.42	0.0	0.04	9.39	0.00	2.147	3.68	1.14	1.5	98.5	0.0	2.60	0.76	0.84	2.86	2.8	0.008	0.77	0.0	0.05	15.39	0.01	2.064	5.79	3.14	2.9	97.1	0.0	1.69	1.45	0.78	0.87	3.03	46614	6187	35	0	0	0	0	logfile
✘	7R12	14228	2022-07-03	2022-02-02	3.3	3.37	3.22	3.3	0.003	0.53	0.0	0.04	13.47	0.00	2.161	4.03	0.00	2.8	97.2	0.0	0.39	0.74	0.81	2.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6858	839	4	0	7	0	0	logfile
✔	7Q0A	13742	2022-07-05	2021-10-14	4.8	5.34	—	4.9	0.002	0.53	0.0	0.04	11.17	0.00	2.216	4.49	0.34	3.9	96.1	0.1	-0.52	0.78	0.63	—	4.8	0.003	0.65	0.0	0.04	11.81	0.00	2.072	16.08	0.00	3.3	96.6	0.1	-0.13	0.89	0.83	0.75	—	25125	3193	19	0	49	0	0	logfile
✔	7VFD	31949	2022-07-03	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.85	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.002	0.49	0.0	0.05	15.37	0.00	2.246	3.23	0.47	2.1	97.9	0.0	0.43	1.13	0.80	0.88	5.42	13262	1623	6	0	0	350	0	logfile
✔	7WKA	32564	2022-07-06	2022-01-08	3.64	3.27	—	3.6	0.002	0.47	0.0	0.04	7.20	0.00	2.171	7.53	0.11	4.0	95.9	0.1	-1.95	0.59	0.46	0.82	3.8	0.004	0.79	0.0	0.05	13.97	0.01	2.068	15.51	0.68	3.4	96.5	0.1	-0.45	1.57	0.76	0.72	1.23	31575	4041	7	0	0	0	0	logfile
✘	7VFF	31951	2022-07-03	2021-09-13	4.1	3.76	3.90	4.0	0.007	0.72	0.0	0.05	13.87	0.00	2.334	2.40	0.41	3.6	96.4	0.0	-0.82	0.79	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12579	1581	3	0	0	0	0	logfile
✔	7LA4	23245	2022-07-03	2021-01-05	3.3	3.51	—	3.5	0.006	0.82	1.0	0.06	15.18	0.00	2.100	17.01	1.91	9.6	89.9	0.5	-4.02	0.75	0.82	3.50	3.5	0.003	0.66	0.0	0.05	16.12	0.00	2.072	13.88	0.34	8.8	91.2	0.0	-2.93	0.47	0.76	0.84	3.06	8281	1052	10	0	17	4	0	logfile
✔	7R13	14229	2022-07-05	2022-02-02	3.6	3.78	3.64	3.7	0.003	0.55	0.0	0.04	12.62	0.00	2.232	6.34	0.00	4.7	95.3	0.0	-0.51	0.81	0.83	2.58	3.7	0.003	0.55	0.0	0.04	14.28	0.00	2.199	6.01	0.08	3.5	96.5	0.0	-0.21	1.16	0.80	0.83	2.27	24303	3003	15	0	57	0	0	logfile
✔	7R11	14227	2022-07-03	2022-02-02	3.5	3.66	3.48	3.7	0.003	0.54	0.0	0.04	11.54	0.00	2.261	4.39	0.54	3.4	96.6	0.0	0.15	0.69	0.75	2.31	3.7	0.004	0.69	0.0	0.04	14.03	0.01	2.244	5.80	0.41	4.2	95.8	0.0	0.13	2.46	0.70	0.75	1.84	6870	837	4	0	8	0	0	logfile
✔	7VFE	31950	2022-07-03	2021-09-13	2.63	2.74	2.54	2.7	0.008	0.58	0.0	0.05	13.52	0.00	2.285	2.98	3.08	3.8	96.2	0.0	-0.79	0.84	0.89	5.29	2.7	0.004	0.59	0.0	0.05	16.07	0.00	2.251	3.54	2.53	3.0	97.0	0.0	0.35	1.14	0.82	0.89	4.88	12630	1587	3	0	0	0	0	logfile
✔	7Q5R	13845	2022-07-06	2021-11-04	3.84	4.21	3.98	4.1	0.006	0.93	0.0	0.07	10.54	0.00	2.365	4.40	0.57	1.9	98.1	0.0	0.17	0.71	0.58	0.16	4.1	0.005	0.83	0.0	0.05	14.95	0.01	2.030	13.45	0.34	1.7	98.3	0.0	1.12	3.75	0.81	0.85	1.33	95520	12600	60	0	0	0	0	logfile
✔	7WK9	32563	2022-07-06	2022-01-08	3.48	3.16	—	3.7	0.002	0.47	0.0	0.04	7.12	0.00	2.151	7.47	0.00	3.8	96.1	0.1	-2.01	0.60	0.48	0.90	3.7	0.004	0.77	0.0	0.04	14.04	0.01	2.091	13.15	0.57	3.4	96.6	0.1	-0.37	1.14	0.77	0.75	1.25	29907	3823	7	0	0	0	0	logfile
✔	7oEU	12864	2022-07-03	2021-05-04	2.64	2.72	2.36	2.7	0.004	0.65	0.0	0.05	14.41	0.00	2.232	6.58	0.00	3.0	97.0	0.0	0.20	0.61	0.82	4.60	2.7	0.003	0.58	0.0	0.04	17.28	0.00	2.216	5.77	1.21	3.6	96.4	0.0	1.17	0.88	0.64	0.85	3.75	10465	1375	10	0	0	0	0	logfile
✔	7oRN	13043	2022-07-04	2021-06-06	2.8	2.83	—	2.8	0.004	0.59	1.0	0.04	12.58	0.00	1.978	4.16	0.19	2.1	97.9	0.0	1.14	0.82	0.89	4.23	2.8	0.003	0.47	0.0	0.04	15.17	0.00	1.976	5.23	0.83	2.4	97.6	0.0	1.44	0.36	0.79	0.90	3.86	14811	1700	6	35	3	92	0	logfile

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