Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UZX	26921	2023-07-07	2022-05-09	3.49	4.37	3.42	3.7	0.007	0.91	0.0	0.05	13.98	0.00	1.865	11.12	0.06	7.0	93.0	0.1	-0.88	0.82	0.72	1.88	3.7	0.003	0.62	0.0	0.04	15.84	0.00	2.051	9.68	0.06	3.7	96.3	0.0	0.55	1.83	0.88	0.83	1.60	14858	1760	9	36	0	0	0	logfile
✔	7UKC	26576	2023-07-04	2022-04-01	3.0	3.39	2.98	3.3	0.006	0.67	0.0	0.04	12.54	0.00	2.127	8.37	0.24	3.1	96.9	0.0	0.47	0.66	0.87	3.11	3.3	0.003	0.59	0.0	0.04	15.43	0.00	2.216	8.80	1.54	2.7	97.3	0.0	1.94	0.38	0.66	0.86	2.76	8000	1036	6	0	4	0	0	logfile
✔	7SQQ	25390	2023-07-19	2021-11-06	4.2	7.22	4.25	3.9	0.003	0.63	0.0	0.04	13.76	0.00	1.134	8.38	0.00	3.1	96.9	0.0	1.04	0.93	0.83	—	3.9	0.003	0.64	0.0	0.04	13.65	0.00	2.215	14.03	0.00	4.6	95.4	0.0	0.59	0.88	0.92	0.87	—	103632	13296	24	0	0	0	0	logfile
✔	6VQ8	21319	2023-07-05	2020-02-04	3.9	4.52	—	4.2	0.009	0.97	0.0	0.06	10.71	0.00	2.220	3.69	0.78	2.5	97.3	0.2	0.61	0.78	0.73	1.33	4.2	0.004	0.85	0.0	0.05	14.38	0.00	2.037	20.59	0.37	4.2	95.8	0.0	0.86	2.77	0.81	0.81	1.10	60714	8451	35	0	1	0	0	logfile
✔	7NRi	12546	2023-07-11	2021-03-03	3.03	3.49	3.11	3.3	0.007	0.63	2.0	0.05	14.47	0.00	1.984	3.89	0.32	6.2	93.7	0.1	-3.46	0.78	0.84	3.97	3.3	0.003	0.51	0.0	0.04	15.42	0.00	2.020	3.76	0.00	3.1	96.9	0.0	-0.28	0.68	0.75	0.87	3.84	23143	1505	6	0	0	0	11351	logfile
✔	5oQJ	3846	2023-07-06	2017-08-11	4.7	4.68	—	4.2	0.007	0.54	0.0	0.04	12.44	0.00	1.336	7.82	0.30	6.5	92.3	1.2	-3.41	0.70	0.58	—	4.3	0.003	0.72	0.0	0.04	14.43	0.00	2.036	13.74	0.02	5.3	94.5	0.2	-0.30	1.79	0.84	0.81	—	62931	7649	43	148	557	0	0	logfile
✔	8E5P	27917	2023-07-10	2022-08-22	4.4	9.89	6.01	8.2	0.003	0.64	0.0	0.04	11.32	0.00	1.299	26.66	1.63	1.3	98.4	0.3	-0.83	0.61	0.33	—	8.2	0.003	0.69	0.0	0.04	11.81	0.00	1.266	18.73	0.00	2.8	97.2	0.0	0.85	1.53	0.85	0.77	—	20038	2502	13	8	18	0	0	logfile
✔	7ZW1	14991	2023-07-06	2022-05-17	3.7	4.52	3.66	3.9	0.002	0.50	0.0	0.03	17.28	0.00	2.021	7.62	0.16	3.1	96.9	0.0	3.09	0.65	0.80	1.73	3.9	0.002	0.49	0.0	0.03	17.41	0.00	2.023	8.73	0.16	2.9	97.1	0.0	3.13	0.70	0.65	0.80	1.48	11807	760	3	0	0	0	5883	logfile
✔	7A6E	11671	2023-07-06	2020-08-25	3.6	2.83	—	3.6	0.009	0.93	0.0	0.06	13.31	0.00	1.357	23.95	1.72	5.3	94.7	0.0	-2.92	0.57	0.73	1.42	3.6	0.004	0.66	0.0	0.04	15.35	0.00	2.215	10.11	0.60	3.9	96.1	0.0	0.40	1.36	0.58	0.76	1.49	12757	1596	4	0	13	0	0	logfile
✔	7MGL	23828	2023-07-07	2021-04-12	2.9	3.03	—	3.0	0.013	0.84	0.0	0.04	14.84	0.00	2.177	5.52	3.10	5.1	94.9	0.0	-1.33	0.64	0.84	3.67	3.0	0.003	0.66	0.0	0.04	16.04	0.00	2.224	5.39	2.14	4.3	95.7	0.0	1.56	0.84	0.63	0.86	3.34	15476	1888	8	0	8	0	0	logfile
✔	7F66	31474	2023-07-15	2021-06-24	2.76	3.34	—	3.1	0.002	0.52	0.0	0.04	12.56	0.00	2.091	6.49	0.00	4.6	95.4	0.0	0.55	0.83	0.87	3.31	3.1	0.003	0.56	0.0	0.04	14.64	0.00	2.210	7.05	0.87	4.7	95.3	0.0	0.97	0.35	0.80	0.86	2.95	33739	4547	15	0	14	0	0	logfile
✔	8ET8	28588	2023-07-04	2022-10-16	3.45	3.65	3.52	3.6	0.003	0.60	0.0	0.04	11.79	0.00	2.035	4.62	0.94	3.8	96.2	0.0	1.27	0.52	0.74	1.41	3.6	0.004	0.59	0.0	0.03	15.01	0.00	1.975	7.77	0.24	4.9	95.1	0.0	0.62	1.20	0.51	0.78	1.42	8125	532	3	0	3	0	4007	logfile
✔	6VQ6	21317	2023-07-06	2020-02-04	3.9	4.53	—	4.2	0.009	0.95	1.0	0.06	10.96	0.00	1.809	2.38	0.30	2.6	97.2	0.3	0.63	0.77	0.71	1.23	4.2	0.004	0.87	0.0	0.05	14.54	0.00	1.947	20.63	0.28	4.4	95.6	0.0	0.55	1.81	0.81	0.82	0.92	62385	8454	35	0	2	0	0	logfile
✔	6KQo	0754	2023-07-06	2019-08-18	2.52	3.75	—	3.2	0.019	1.16	0.0	0.07	14.49	0.00	1.883	10.69	0.03	9.4	90.6	0.0	-5.07	0.87	0.85	3.52	3.3	0.004	0.74	1.0	0.12	15.30	0.00	1.796	8.64	0.84	3.5	96.5	0.0	0.22	1.66	0.85	0.84	3.14	63373	3936	24	0	48	0	31225	logfile
✔	6VQH	21350	2023-07-09	2020-02-05	4.4	4.72	—	4.6	0.008	1.00	0.0	0.07	11.13	0.00	2.336	5.47	2.06	2.6	97.2	0.2	0.63	0.64	0.67	—	4.6	0.004	0.83	0.0	0.05	11.90	0.00	2.130	19.29	0.00	3.1	96.9	0.0	1.38	1.04	0.68	0.73	—	19338	2813	18	0	0	0	0	logfile
✔	7ZGQ	14711	2023-07-07	2022-04-04	2.8	2.47	2.69	2.8	0.003	0.55	0.0	0.04	16.53	0.00	2.162	11.35	3.25	6.7	93.3	0.0	-1.11	0.77	0.85	3.25	2.8	0.003	0.59	0.0	0.05	16.86	0.00	2.152	12.01	4.44	7.1	92.9	0.0	-1.30	0.27	0.77	0.85	3.55	13704	1749	4	0	0	0	0	logfile
✔	8EBY	28002	2023-07-11	2022-08-31	3.6	2.60	3.53	2.1	0.002	0.47	0.0	0.04	11.83	0.00	2.142	8.09	2.23	4.3	95.6	0.0	0.93	0.71	0.72	1.81	2.1	0.004	0.79	0.0	0.04	16.94	0.00	2.134	15.64	0.60	5.4	94.5	0.0	-0.27	1.43	0.74	0.73	1.50	23709	2834	15	45	7	0	0	logfile
✔	8HAi	34591	2023-07-08	2022-10-26	4.7	4.54	4.59	4.0	0.003	0.58	0.0	0.03	24.62	0.00	2.249	10.79	0.00	1.5	98.5	0.0	1.74	0.83	0.72	—	4.0	0.003	0.60	0.0	0.03	26.25	0.00	2.109	16.54	0.00	1.6	98.4	0.0	1.91	1.65	0.86	0.79	—	16547	1310	11	294	0	0	0	logfile
✔	6KPi	0747	2023-07-06	2019-08-15	2.43	3.50	—	3.0	0.008	0.67	0.0	0.06	11.99	0.00	1.974	5.19	0.00	7.1	92.9	0.0	-4.39	0.85	0.88	4.58	3.0	0.005	0.78	3.0	0.13	14.43	0.00	1.988	5.83	0.62	3.5	96.5	0.0	1.23	0.72	0.85	0.89	4.30	62209	3936	24	0	24	0	31225	logfile
✔	6KQ8	0751	2023-07-06	2019-08-16	3.0	4.05	—	3.7	0.004	0.68	3.0	0.13	12.41	0.00	2.049	6.27	0.00	4.3	95.7	0.0	-4.72	0.87	0.86	3.55	3.7	0.005	0.76	2.0	0.13	13.98	0.00	2.013	7.94	0.25	5.8	94.2	0.0	-0.01	1.38	0.87	0.87	3.82	62197	3936	24	0	12	0	31225	logfile

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