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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6LY9 | 30015 | 2022-12-13 | 2020-02-13 | 3.93 | 3.98 | — | 3.9 | 0.006 | 0.75 | 0.0 | 0.04 | 14.60 | 0.00 | 2.195 | 21.60 | 1.05 | 7.3 | 92.7 | 0.0 | -3.45 | 0.74 | 0.82 | 1.13 | 3.9 | 0.004 | 0.84 | 0.0 | 0.05 | 16.77 | 0.00 | 2.069 | 20.01 | 0.97 | 4.7 | 95.3 | 0.0 | 0.40 | 1.29 | 0.73 | 0.81 | 0.83 | 13888 | 1894 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SLU | 10240 | 2022-12-12 | 2019-08-20 | 4.7 | 4.88 | 4.61 | 4.8 | 0.004 | 0.64 | 0.0 | 0.04 | 9.23 | 0.00 | 1.454 | 9.92 | 0.18 | 1.3 | 98.7 | 0.0 | -1.03 | 0.69 | 0.77 | — | 4.7 | 0.004 | 0.87 | 0.0 | 0.05 | 13.27 | 0.01 | 2.140 | 20.43 | 0.00 | 3.9 | 96.1 | 0.0 | -0.08 | 1.29 | 0.73 | 0.81 | — | 10336 | 1320 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C8D | 30305 | 2022-12-12 | 2020-05-29 | 3.0 | 2.79 | — | 2.8 | 0.003 | 0.53 | 0.0 | 0.04 | 17.37 | 0.00 | 1.998 | 9.11 | 6.05 | 3.6 | 96.4 | 0.0 | -2.80 | 0.71 | 0.76 | 3.07 | 2.8 | 0.002 | 0.67 | 0.0 | 0.04 | 17.96 | 0.00 | 2.097 | 10.56 | 3.98 | 4.8 | 95.2 | 0.0 | 0.05 | 1.10 | 0.72 | 0.78 | 2.36 | 6359 | 792 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6LN5 | 0924 | 2022-12-11 | 2019-12-28 | 2.8 | 2.93 | 2.78 | 2.9 | 0.005 | 0.63 | 0.0 | 0.04 | 12.32 | 0.00 | 2.027 | 5.39 | 0.12 | 2.0 | 98.0 | 0.0 | -4.16 | 0.68 | 0.83 | 3.56 | 2.9 | 0.003 | 0.54 | 0.0 | 0.04 | 16.36 | 0.00 | 2.241 | 5.96 | 1.85 | 1.4 | 98.6 | 0.0 | 0.67 | 1.33 | 0.68 | 0.85 | 2.78 | 7840 | 1011 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6SKK | 10226 | 2022-12-12 | 2019-08-15 | 3.6 | 3.76 | 3.63 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 12.96 | 0.00 | 2.319 | 7.69 | 0.18 | 1.7 | 98.3 | 0.0 | -1.14 | 0.70 | 0.75 | 1.70 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 16.81 | 0.00 | 2.126 | 12.68 | 0.27 | 2.7 | 97.3 | 0.0 | 0.81 | 0.73 | 0.71 | 0.77 | 1.58 | 10328 | 1320 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y5K | 10700 | 2022-12-12 | 2020-02-25 | 4.2 | 4.47 | 4.20 | 4.2 | 0.004 | 0.75 | 0.0 | 0.05 | 12.95 | 0.00 | 2.096 | 10.85 | 0.00 | 2.6 | 97.4 | 0.0 | -1.98 | 0.86 | 0.76 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.05 | 12.90 | 0.00 | 2.075 | 18.08 | 0.00 | 3.3 | 96.7 | 0.0 | -0.02 | 1.00 | 0.87 | 0.79 | — | 10614 | 1335 | 9 | 0 | 6 | 0 | 0 | logfile |
✔ | 6LN8 | 0927 | 2022-12-11 | 2019-12-28 | 3.1 | 3.26 | 3.33 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 12.81 | 0.00 | 2.051 | 6.74 | 0.00 | 3.0 | 97.0 | 0.0 | -2.71 | 0.70 | 0.80 | 2.37 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 15.04 | 0.00 | 1.382 | 9.05 | 0.00 | 3.1 | 96.9 | 0.0 | 0.12 | 0.47 | 0.69 | 0.82 | 1.72 | 7739 | 1003 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6WB8 | 21586 | 2022-12-13 | 2020-03-26 | 3.24 | 3.55 | — | 3.5 | 0.011 | 0.89 | 0.0 | 0.05 | 8.78 | 0.00 | 2.124 | 16.94 | 0.00 | 5.9 | 93.9 | 0.2 | -3.70 | 0.73 | 0.79 | 3.73 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 15.03 | 0.00 | 2.011 | 8.57 | 0.53 | 4.3 | 95.5 | 0.2 | 1.35 | 1.65 | 0.71 | 0.85 | 3.05 | 14888 | 1852 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 5H0R | 9564 | 2022-12-13 | 2016-10-06 | 3.9 | 3.72 | — | 3.7 | 0.008 | 0.81 | 0.0 | 0.05 | 10.30 | 0.00 | 1.744 | 20.03 | 0.28 | 8.5 | 91.4 | 0.1 | -4.11 | 0.33 | 0.70 | 1.99 | 3.7 | 0.003 | 0.77 | 0.0 | 0.04 | 15.48 | 0.00 | 2.099 | 16.21 | 0.49 | 7.3 | 92.5 | 0.2 | -1.14 | 1.22 | 0.37 | 0.76 | 2.12 | 15037 | 1656 | 4 | 84 | 0 | 0 | 0 | logfile |
✔ | 6Wi9 | 21683 | 2022-12-12 | 2020-04-09 | 4.3 | 4.37 | 4.24 | 4.3 | 0.002 | 0.50 | 0.0 | 0.04 | 12.85 | 0.00 | 2.214 | 5.56 | 0.00 | 4.2 | 95.8 | 0.0 | -3.72 | 0.77 | 0.78 | — | 4.3 | 0.003 | 0.70 | 0.0 | 0.04 | 13.90 | 0.00 | 2.148 | 14.34 | 0.11 | 6.7 | 93.3 | 0.0 | -0.74 | 0.80 | 0.78 | 0.78 | — | 8550 | 1108 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LLY | 0915 | 2022-12-11 | 2019-12-24 | 2.8 | 2.92 | 2.72 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 12.24 | 0.00 | 2.043 | 6.26 | 0.12 | 3.1 | 96.9 | 0.0 | -4.03 | 0.66 | 0.79 | 2.62 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 15.47 | 0.00 | 1.330 | 8.18 | 1.16 | 2.9 | 97.1 | 0.0 | 0.06 | 0.49 | 0.64 | 0.80 | 1.86 | 7774 | 1006 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7BW4 | 30226 | 2022-12-12 | 2020-04-13 | 3.7 | 3.92 | — | 3.8 | 0.004 | 0.66 | 1.0 | 0.05 | 15.16 | 0.00 | 2.078 | 16.31 | 1.68 | 4.3 | 95.5 | 0.2 | -2.50 | 0.77 | 0.77 | 1.82 | 3.8 | 0.003 | 0.73 | 0.0 | 0.04 | 16.48 | 0.00 | 2.205 | 14.55 | 0.42 | 4.8 | 95.1 | 0.1 | -0.73 | 1.35 | 0.77 | 0.76 | 1.25 | 8605 | 1078 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 6WCB | 21605 | 2022-12-12 | 2020-03-30 | 3.17 | 3.17 | — | 3.2 | 0.005 | 0.41 | 0.0 | 0.03 | 13.87 | 0.00 | 2.128 | 2.50 | 1.29 | 0.8 | 99.2 | 0.0 | 0.58 | 0.55 | 0.77 | 2.89 | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 15.53 | 0.00 | 2.084 | 3.96 | 0.16 | 1.5 | 98.5 | 0.0 | 3.59 | 1.29 | 0.54 | 0.79 | 2.38 | 11647 | 734 | 6 | 0 | 7 | 40 | 5904 | logfile |
✔ | 6WCC | 21606 | 2022-12-12 | 2020-03-30 | 3.24 | 3.27 | — | 3.3 | 0.003 | 0.51 | 0.0 | 0.03 | 15.73 | 0.00 | 2.025 | 4.39 | 2.26 | 0.8 | 99.2 | 0.0 | 1.46 | 0.53 | 0.76 | 1.58 | 3.3 | 0.003 | 0.52 | 0.0 | 0.03 | 15.73 | 0.00 | 2.212 | 7.06 | 0.32 | 2.6 | 97.4 | 0.0 | 4.20 | 0.73 | 0.51 | 0.78 | 1.78 | 11629 | 734 | 6 | 0 | 5 | 12 | 5908 | logfile |
✔ | 6TKo | 10515 | 2022-12-11 | 2019-11-28 | 3.3 | 3.40 | 3.21 | 3.6 | 0.005 | 0.51 | 0.0 | 0.04 | 12.09 | 0.00 | 2.079 | 3.00 | 0.23 | 1.0 | 99.0 | 0.0 | -2.07 | 0.71 | 0.73 | 2.06 | 3.5 | 0.005 | 0.72 | 0.0 | 0.04 | 14.62 | 0.00 | 2.108 | 15.93 | 0.23 | 2.8 | 97.2 | 0.0 | 0.03 | 1.74 | 0.76 | 0.80 | 2.45 | 8085 | 1052 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7CTT | 30469 | 2022-12-12 | 2020-08-20 | 3.2 | 3.41 | — | 3.3 | 0.009 | 0.51 | 0.0 | 0.04 | 12.96 | 0.00 | 2.114 | 10.40 | 1.01 | 4.9 | 95.1 | 0.0 | -3.11 | 0.71 | 0.77 | 2.67 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 14.86 | 0.00 | 2.029 | 14.52 | 0.56 | 4.9 | 95.1 | 0.0 | -0.89 | 0.40 | 0.69 | 0.77 | 2.47 | 8912 | 1031 | 7 | 34 | 4 | 0 | 0 | logfile |
✔ | 6LN6 | 0925 | 2022-12-11 | 2019-12-28 | 2.9 | 3.03 | 2.87 | 3.0 | 0.005 | 0.64 | 0.0 | 0.04 | 11.98 | 0.00 | 2.035 | 6.60 | 0.00 | 2.0 | 98.0 | 0.0 | -3.94 | 0.65 | 0.82 | 3.55 | 3.0 | 0.005 | 0.62 | 0.0 | 0.05 | 15.68 | 0.00 | 2.030 | 7.36 | 1.62 | 2.2 | 97.8 | 0.0 | 0.18 | 1.33 | 0.66 | 0.84 | 3.42 | 7836 | 1010 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6LHV | 0900 | 2022-12-13 | 2019-12-10 | 4.59 | 4.86 | — | 4.4 | 0.010 | 1.38 | 0.0 | 0.05 | 5.37 | 0.00 | 1.654 | 9.63 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.70 | 0.59 | — | 4.4 | 0.009 | 1.36 | 0.0 | 0.05 | 6.54 | 0.00 | 2.055 | 51.70 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.58 | 0.84 | 0.81 | — | 8456 | 0 | 3 | 0 | 1707 | 0 | 0 | logfile |
✔ | 6Z97 | 11119 | 2022-12-21 | 2020-06-03 | 3.4 | 3.50 | — | 3.4 | 0.004 | 0.57 | 0.0 | 0.05 | 12.23 | 0.00 | 2.205 | 5.15 | 0.73 | 4.7 | 95.3 | 0.0 | -0.75 | 0.77 | 0.82 | 3.10 | 3.4 | 0.004 | 0.54 | 0.0 | 0.04 | 13.84 | 0.00 | 1.956 | 5.41 | 0.24 | 4.3 | 95.7 | 0.0 | -0.17 | 1.04 | 0.80 | 0.84 | 2.75 | 45362 | 2975 | 17 | 0 | 49 | 0 | 21895 | logfile |
✔ | 6LLE | 0912 | 2022-12-11 | 2019-12-23 | 2.9 | 3.06 | 2.85 | 3.0 | 0.005 | 0.63 | 0.0 | 0.04 | 12.59 | 0.00 | 2.050 | 6.60 | 0.00 | 2.7 | 97.3 | 0.0 | -1.87 | 0.67 | 0.82 | 3.28 | 3.0 | 0.002 | 0.56 | 0.0 | 0.04 | 16.71 | 0.00 | 2.085 | 7.98 | 2.41 | 1.9 | 98.1 | 0.0 | 0.51 | 0.45 | 0.68 | 0.84 | 2.91 | 7916 | 1020 | 1 | 0 | 4 | 0 | 0 | logfile |