Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6V9Z	21132	2022-04-05	2019-12-16	3.35	4.22	3.56	3.9	0.014	1.88	0.0	0.09	14.27	0.00	2.382	3.65	2.97	5.1	94.9	0.0	-2.85	0.74	0.80	1.47	3.9	0.003	0.59	0.0	0.04	15.49	0.00	2.235	6.79	0.16	2.9	97.1	0.0	2.23	1.67	0.77	0.86	1.48	11434	1472	4	0	0	0	0	logfile
✔	6o0Z	0585	2022-04-05	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.52	0.0	0.03	16.62	0.00	2.157	4.96	0.14	5.7	94.3	0.0	0.16	0.32	0.85	0.88	3.28	11912	1288	4	135	0	0	0	logfile
✔	6XWQ	10635	2022-04-04	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.77	0.0	0.04	15.44	0.00	2.161	13.51	0.20	3.3	96.7	0.0	1.14	1.17	0.72	0.84	0.62	9572	1281	6	0	0	0	0	logfile
✔	5Z3V	6883	2022-04-05	2018-01-08	4.22	3.73	—	3.7	0.004	0.63	0.0	0.04	23.01	0.00	2.160	12.97	0.00	7.8	92.2	0.0	-2.72	0.69	0.74	—	3.7	0.003	0.62	0.0	0.04	24.39	0.00	2.204	10.28	0.09	3.6	96.3	0.1	0.97	0.84	0.69	0.71	—	16758	1339	12	292	3	0	0	logfile
✔	6EoJ	3908	2022-04-05	2017-10-09	3.55	3.58	3.51	3.6	0.007	1.33	7.0	0.09	16.65	0.00	2.526	9.73	4.80	10.1	88.2	1.7	-3.75	0.59	0.78	2.60	3.6	0.005	0.84	0.0	0.05	17.60	0.01	2.089	22.86	0.52	7.3	92.6	0.1	-2.45	1.58	0.65	0.78	2.27	13688	1710	4	0	7	0	0	logfile
✔	6PPF	20435	2022-04-06	2019-07-06	3.4	3.48	—	3.4	0.006	0.88	13.0	0.05	19.21	0.00	1.152	14.98	7.36	9.0	90.1	0.9	-4.80	0.73	0.73	1.38	3.4	0.005	0.73	0.0	0.04	18.68	0.01	1.988	11.80	0.75	9.0	90.8	0.1	-2.78	0.64	0.81	0.82	1.63	71835	2101	22	2583	0	13	0	logfile
✔	5H1Q	9570	2022-04-06	2016-10-11	3.3	3.90	—	4.0	0.008	1.04	0.0	0.06	11.65	0.00	1.998	16.22	0.31	12.6	86.8	0.6	-5.07	0.44	0.69	3.01	3.9	0.004	0.80	0.0	0.04	16.47	0.00	2.137	8.99	0.93	9.3	90.1	0.6	-0.11	0.82	0.56	0.80	1.75	23784	2888	8	0	0	0	0	logfile
✔	6PP6	20420	2022-04-08	2019-07-05	4.28	4.54	—	4.3	0.004	0.71	0.0	0.04	11.88	0.00	2.179	3.17	0.00	0.6	99.4	0.0	-1.13	0.79	0.78	—	4.3	0.003	0.57	0.0	0.04	12.51	0.00	1.914	11.87	0.06	4.0	96.0	0.0	-0.92	1.51	0.81	0.81	—	32106	2062	13	0	12	0	16126	logfile
✔	6QX3	4661	2022-04-06	2019-03-07	3.79	3.94	—	3.9	0.007	0.77	0.0	0.04	14.67	0.00	2.050	4.36	0.00	9.7	90.3	0.0	-5.16	0.74	0.79	2.40	3.9	0.003	0.59	0.0	0.04	16.42	0.00	2.024	9.17	0.51	8.5	91.5	0.0	-2.28	0.72	0.75	0.80	2.57	21587	1337	6	14	0	0	10646	logfile
✔	6G51	4350	2022-04-09	2018-03-28	4.1	4.42	—	4.0	0.007	1.44	22.0	0.10	21.21	0.00	0.264	3.79	0.00	7.0	92.3	0.8	-2.90	0.71	0.63	—	3.9	0.004	0.75	0.0	0.04	21.98	0.00	1.945	9.45	0.00	12.1	87.8	0.1	-1.57	1.59	0.81	0.69	—	50662	6237	38	1659	0	0	0	logfile
✔	5T6R	8368	2022-04-07	2016-09-01	4.2	4.31	4.24	4.2	0.007	1.05	1.0	0.09	16.99	0.00	1.229	1.49	5.55	7.5	90.6	1.9	-3.58	0.82	0.80	—	4.2	0.003	0.65	0.0	0.04	16.15	0.00	1.878	11.94	0.06	7.0	92.5	0.6	-1.60	0.95	0.83	0.81	—	126616	6441	51	3483	299	12	0	logfile
✔	5YWC	6852	2022-04-09	2017-11-29	4.3	4.48	4.24	4.3	0.004	0.80	0.0	0.04	14.47	0.00	2.030	14.72	7.97	4.4	95.3	0.4	-1.76	0.66	0.75	—	4.3	0.004	0.75	0.0	0.04	12.95	0.00	1.943	15.67	0.00	4.3	95.7	0.1	0.97	3.33	0.68	0.79	—	51108	6588	16	0	20	0	0	logfile
✔	6UES	20755	2022-04-04	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6XYo	10650	2022-04-04	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.005	0.56	0.0	0.05	18.01	0.00	2.263	4.36	1.48	3.2	96.8	0.0	-1.79	0.96	0.49	0.91	4.66	5490	800	10	0	0	0	0	logfile
✔	3J9C	6224	2022-04-06	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	2.277	7.02	6.13	4.8	95.2	0.0	-0.81	0.74	0.87	2.67	3.0	0.003	0.59	0.0	0.04	16.40	0.00	2.184	7.85	3.09	2.6	97.4	0.0	0.29	1.52	0.76	0.86	3.08	23296	2961	7	0	14	0	0	logfile
✔	4UG0	2938	2022-04-21	2015-03-20	3.6	3.15	—	3.1	0.005	0.88	0.0	0.04	16.76	0.00	1.818	14.69	0.04	11.7	83.3	5.0	-2.77	0.59	0.70	2.13	3.1	0.005	0.82	2.0	0.04	18.30	0.01	1.796	17.17	0.85	12.7	86.3	1.0	-3.08	0.55	0.58	0.68	1.45	218776	11675	102	5869	245	0	0	logfile
✔	6GEJ	4395	2022-04-09	2018-04-26	3.6	3.77	—	3.7	0.003	0.62	0.0	0.04	18.57	0.00	1.491	9.07	3.93	4.6	95.4	0.0	-2.70	0.82	0.77	0.98	3.7	0.005	0.84	0.0	0.04	20.68	0.01	0.891	11.26	0.40	4.8	95.2	0.0	-0.31	0.84	0.84	0.80	1.01	43702	4683	29	308	151	0	0	logfile
✔	6KLC	0706	2022-04-05	2019-07-30	3.9	3.97	—	3.9	0.003	0.70	0.0	0.04	13.24	0.00	2.198	10.92	0.64	9.3	90.5	0.2	-3.27	0.73	0.77	1.53	3.9	0.003	0.82	0.0	0.05	16.24	0.00	2.114	12.77	0.40	9.4	90.5	0.1	-0.61	2.05	0.75	0.78	0.84	11210	1436	1	0	1	0	0	logfile
✔	6NT4	0501	2022-04-05	2019-01-28	3.5	4.11	3.77	4.0	0.019	1.25	1.0	0.16	16.63	0.00	2.096	12.86	0.64	12.9	86.7	0.4	-4.72	0.51	0.76	1.58	4.0	0.004	0.81	0.0	0.05	17.08	0.01	2.212	10.69	0.48	9.8	90.1	0.1	-2.07	1.50	0.48	0.74	1.10	11924	1406	4	0	20	0	0	logfile
✔	6H6B	0148	2022-04-04	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.2	0.005	0.91	0.0	0.18	11.69	0.00	2.137	6.56	0.50	19.6	80.4	0.0	-4.04	1.83	0.42	0.78	3.27	8060	580	10	0	0	0	4100	logfile

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