Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XDA	33140	2023-08-14	2022-03-26	2.98	3.15	3.14	3.1	0.005	0.54	0.0	0.04	16.34	0.00	1.978	4.13	1.85	6.3	93.6	0.1	-3.63	0.66	0.84	3.84	3.1	0.003	0.57	0.0	0.04	16.90	0.00	2.013	4.45	3.12	4.3	95.6	0.1	-0.66	0.65	0.65	0.86	3.82	15729	1071	5	0	0	0	7646	logfile
✔	7UKG	26580	2023-08-10	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.003	0.48	0.0	0.04	13.81	0.00	2.354	5.86	0.22	1.8	98.2	0.0	3.84	0.22	0.70	0.90	4.29	8652	1128	10	0	4	0	0	logfile
✔	7oKN	12962	2023-08-19	2021-05-18	3.34	3.57	—	3.5	0.006	0.92	0.0	0.04	17.96	0.00	1.898	13.52	1.03	9.3	90.7	0.0	-2.82	0.61	0.66	1.09	3.5	0.008	0.80	0.0	0.05	17.87	0.00	2.129	13.57	0.89	8.2	91.8	0.0	-1.62	2.57	0.74	0.85	2.58	28067	3757	34	0	0	0	0	logfile
✔	7UoP	26652	2023-08-14	2022-04-13	2.8	3.24	2.81	3.1	0.004	0.59	0.0	0.05	12.26	0.00	2.126	2.36	1.02	2.4	97.6	0.0	0.45	0.81	0.83	3.56	3.1	0.003	0.56	0.0	0.04	14.44	0.00	2.202	2.81	1.54	3.5	96.5	0.0	0.35	0.43	0.84	0.88	3.61	15702	2010	12	0	12	0	0	logfile
✔	7RQS	24635	2023-08-10	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.64	0.0	0.04	15.66	0.00	1.984	11.67	0.26	8.9	91.0	0.1	-1.05	0.58	0.71	0.69	2.23	7792	1074	1	0	1	0	0	logfile
✔	8DZJ	27801	2023-08-11	2022-08-07	2.9	3.60	2.84	3.0	0.004	0.60	0.0	0.04	16.53	0.00	2.209	12.65	0.38	1.5	98.5	0.0	0.94	0.77	0.71	3.07	3.0	0.003	0.62	0.0	0.04	17.22	0.00	2.152	14.26	1.13	2.3	97.7	0.0	1.39	0.56	0.85	0.81	2.89	9030	613	6	190	1	0	0	logfile
✔	8H3D	34464	2023-08-18	2022-10-08	3.27	3.75	3.39	3.6	0.004	0.59	3.0	0.05	16.86	0.00	2.173	3.86	0.26	6.4	93.6	0.0	-3.11	0.77	0.85	1.54	3.6	0.004	0.59	0.0	0.05	17.06	0.00	2.159	4.04	0.33	6.4	93.6	0.0	-2.76	0.29	0.78	0.87	1.57	24448	3103	6	0	13	0	0	logfile
✔	7NSH	12567	2023-08-11	2021-03-07	3.2	3.39	3.12	3.3	0.003	0.53	0.0	0.05	15.69	0.00	1.187	7.76	0.02	4.2	95.8	0.1	0.71	0.80	0.84	2.70	3.3	0.002	0.55	0.0	0.04	16.92	0.00	1.115	8.46	0.33	4.0	96.0	0.0	0.81	0.52	0.79	0.89	2.50	112448	9643	79	1611	229	2	0	logfile
✔	7XDL	33151	2023-08-24	2022-03-27	3.08	3.34	3.14	3.3	0.005	0.75	0.0	0.06	13.59	0.00	2.195	7.74	0.56	5.1	94.9	0.1	-0.28	0.77	0.83	3.45	3.3	0.003	0.58	0.0	0.04	15.01	0.00	2.160	7.16	0.32	4.6	95.4	0.0	-0.03	0.75	0.79	0.88	2.93	38987	4972	30	0	36	0	0	logfile
✔	7WS3	32742	2023-08-21	2022-01-28	3.6	4.00	—	3.8	0.004	0.65	0.0	0.05	13.11	0.00	2.202	7.83	0.03	3.2	96.8	0.0	-0.92	0.80	0.76	2.72	3.8	0.003	0.64	0.0	0.04	15.09	0.00	2.104	8.43	0.37	3.8	96.2	0.0	-0.48	1.30	0.83	0.83	2.31	30215	3811	27	0	54	0	0	logfile
✔	7WWi	32866	2023-08-21	2022-02-13	3.5	4.12	—	3.8	0.003	0.60	0.0	0.05	13.13	0.00	2.107	7.68	0.00	2.9	97.1	0.0	0.14	0.84	0.86	2.48	3.8	0.004	0.61	0.0	0.04	14.73	0.00	2.156	9.47	0.30	4.2	95.8	0.0	0.09	0.40	0.84	0.87	2.48	30237	3791	26	0	43	0	0	logfile
✔	8HVH	35043	2023-08-12	2022-12-26	3.07	3.42	3.30	3.5	0.005	0.76	0.0	0.05	14.43	0.00	2.107	10.76	0.00	6.3	93.7	0.0	-3.04	0.65	0.77	1.38	3.5	0.004	0.69	0.0	0.04	16.62	0.00	2.141	9.42	0.51	4.3	95.7	0.0	-0.49	1.22	0.63	0.80	1.51	10704	1364	1	0	0	0	0	logfile
✔	8G9L	29871	2023-08-15	2023-02-21	3.3	4.20	3.27	3.5	0.008	0.57	0.0	0.04	18.71	0.00	1.929	2.75	0.00	3.9	96.1	0.0	0.08	0.88	0.82	2.35	3.5	0.003	0.53	0.0	0.04	17.55	0.00	1.469	5.72	0.00	3.0	97.0	0.0	1.87	1.17	0.89	0.85	2.35	17801	1054	7	24	5	0	8774	logfile
✔	7WRV	32736	2023-08-09	2022-01-27	2.47	2.59	—	2.7	0.003	0.60	0.0	0.04	14.42	0.00	2.061	3.93	0.58	2.9	97.1	0.0	0.27	0.47	0.74	3.28	2.6	0.003	0.57	0.0	0.05	16.18	0.00	1.966	5.35	2.90	5.5	94.5	0.0	-0.66	1.46	0.49	0.78	2.30	6359	427	3	0	0	0	3092	logfile
✔	8E2H	27836	2023-08-11	2022-08-15	2.3	2.41	2.27	2.4	0.003	0.60	0.0	0.03	15.28	0.00	1.980	6.85	0.52	1.1	98.9	0.0	1.61	0.65	0.82	4.36	2.4	0.004	0.58	0.0	0.04	16.12	0.00	1.971	7.33	2.78	0.8	99.2	0.0	2.63	0.93	0.65	0.83	4.00	10412	656	1	0	0	40	5280	logfile
✔	8P6A	17462	2023-08-09	2023-05-25	3.63	3.93	3.43	3.9	0.003	0.66	0.0	0.04	17.40	0.00	2.161	10.48	0.29	2.4	97.6	0.0	2.80	0.57	0.81	1.41	3.9	0.003	0.65	0.0	0.04	17.37	0.00	2.146	11.22	0.00	3.1	96.9	0.0	2.99	0.85	0.57	0.81	1.29	3337	432	1	0	0	0	0	logfile
✔	7LDE	23284	2023-08-22	2021-01-13	3.9	4.54	—	4.0	0.004	0.47	0.0	0.05	9.93	0.00	1.548	4.47	0.00	1.5	98.5	0.0	-3.63	0.70	0.55	0.99	3.9	0.006	0.81	0.0	0.05	12.61	0.00	2.060	19.32	0.50	9.1	90.9	0.0	-1.84	1.36	0.76	0.74	1.40	34424	4990	27	0	57	0	0	logfile
✘	6XP5	22284	2023-08-16	2020-07-08	4.2	4.73	—	4.3	0.004	0.90	0.0	0.05	14.32	0.00	2.131	14.90	0.27	15.9	83.2	0.9	-5.23	0.79	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21065	2707	15	0	221	0	0	logfile
✔	8AP9	15562	2023-08-16	2022-08-09	3.7	3.41	3.21	3.4	0.006	0.48	0.0	0.04	9.61	0.00	2.191	2.85	0.40	1.9	98.1	0.0	-0.08	0.57	0.83	3.96	3.4	0.003	0.47	0.0	0.04	13.17	0.00	2.147	3.87	0.00	3.2	96.8	0.0	-1.39	1.39	0.63	0.86	3.40	19658	1285	14	0	1	0	9972	logfile
✔	7TYZ	26200	2023-08-20	2022-02-15	3.51	3.89	—	3.7	0.004	0.64	0.0	0.05	14.07	0.00	2.126	7.84	0.00	8.7	91.3	0.0	-1.41	0.74	0.79	1.64	3.7	0.014	0.74	0.0	0.04	15.67	0.01	2.104	9.68	0.19	9.6	90.3	0.1	-1.45	0.95	0.77	0.86	1.89	29736	3711	27	0	66	0	0	logfile

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