Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LMA	23437	2023-02-22	2021-02-05	3.3	3.45	—	3.4	0.004	0.56	0.0	0.04	16.77	0.00	2.202	6.67	0.91	4.3	95.7	0.0	-2.64	0.73	0.82	2.57	3.4	0.002	0.55	0.0	0.04	17.83	0.00	2.068	7.82	0.24	2.7	97.3	0.0	0.22	0.56	0.76	0.84	1.91	18672	1837	9	170	1	0	0	logfile
✔	7AJQ	11806	2023-02-19	2020-09-29	4.0	3.67	4.30	4.2	0.002	0.55	0.0	0.03	13.10	0.00	2.208	12.84	0.00	3.5	96.5	0.0	-0.98	0.76	0.76	—	4.2	0.003	0.92	0.0	0.05	15.83	0.00	2.139	20.36	0.21	3.6	96.4	0.0	0.85	0.86	0.77	0.77	—	9210	1222	7	0	0	0	0	logfile
✔	8E3i	27866	2023-02-20	2022-08-17	2.53	2.76	2.58	2.8	0.004	0.62	0.0	0.04	13.29	0.00	2.215	8.98	0.07	5.3	94.6	0.1	-0.36	0.73	0.88	4.95	2.8	0.003	0.63	0.0	0.04	15.81	0.00	2.183	8.53	0.82	5.6	94.3	0.1	-0.47	1.70	0.75	0.90	4.69	13431	1671	5	7	3	0	0	logfile
✔	7XMS	33303	2023-02-18	2022-04-26	2.9	3.10	2.83	3.2	0.002	0.46	0.0	0.04	10.09	0.00	2.251	6.90	0.00	2.9	97.1	0.0	-4.06	0.55	0.65	1.49	3.1	0.004	0.76	0.0	0.04	14.98	0.00	2.040	14.79	1.73	3.7	96.3	0.0	-0.47	0.80	0.61	0.76	2.09	8370	1113	6	0	0	0	0	logfile
✔	7WX4	32876	2023-02-16	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.57	0.0	0.04	17.71	0.00	2.120	5.71	0.00	6.0	94.0	0.0	-0.14	0.45	0.43	0.82	0.59	1992	260	2	0	0	0	0	logfile
✔	6WKW	21811	2023-02-19	2020-04-17	3.6	3.75	—	3.6	0.017	1.19	0.0	0.06	14.39	0.00	2.066	12.81	0.52	12.6	87.3	0.2	-5.89	0.87	0.91	3.41	3.7	0.004	0.67	0.0	0.04	15.38	0.00	2.140	9.64	0.41	7.6	92.2	0.2	-2.36	0.45	0.86	0.90	2.99	10037	1319	8	0	4	0	0	logfile
✔	7Y85	33681	2023-02-22	2022-06-22	2.73	3.04	2.87	3.0	0.004	0.57	0.0	0.04	18.77	0.00	1.940	15.62	3.87	2.3	97.7	0.0	-0.05	0.55	0.75	2.97	3.0	0.005	0.60	0.0	0.04	19.03	0.00	1.935	16.15	4.30	2.4	97.6	0.0	0.11	0.32	0.59	0.78	2.93	16502	1884	5	59	5	0	0	logfile
✔	7WB0	32391	2023-02-19	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	18.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.003	0.58	0.0	0.03	19.27	0.00	2.184	8.33	0.00	4.3	95.6	0.1	0.39	1.06	0.71	0.77	1.00	10096	797	4	175	0	0	0	logfile
✔	6MHo	9115	2023-02-28	2018-09-18	3.4	3.50	3.41	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.84	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.4	0.003	0.55	0.0	0.03	12.70	0.00	2.003	6.04	0.14	4.5	95.5	0.0	0.98	2.46	0.68	0.81	3.70	32224	2404	4	0	0	0	15184	logfile
✔	7TJT	25931	2023-02-24	2022-01-17	3.2	3.46	3.29	3.4	0.003	0.63	0.0	0.05	12.67	0.00	1.991	3.26	0.00	1.2	98.8	0.0	0.60	0.75	0.85	3.19	3.4	0.003	0.54	0.0	0.04	14.62	0.00	2.005	6.04	0.04	1.7	98.3	0.0	1.23	2.65	0.75	0.86	2.61	23129	3099	11	0	7	0	0	logfile
✔	7X9C	33071	2023-02-18	2022-03-15	3.0	3.24	—	3.2	0.002	0.52	0.0	0.04	10.16	0.00	2.208	8.62	0.00	3.2	96.8	0.0	-2.49	0.58	0.71	1.58	3.2	0.004	0.72	0.0	0.04	14.54	0.00	2.141	12.69	2.39	3.1	96.9	0.0	-0.27	0.64	0.60	0.78	1.79	7219	945	5	0	0	0	0	logfile
✔	6Q0X	20555	2023-02-20	2019-08-02	4.2	4.30	—	4.2	0.007	0.88	0.0	0.05	17.07	0.00	2.139	24.04	1.21	8.1	91.9	0.0	-3.83	0.68	0.72	—	4.2	0.004	0.74	0.0	0.04	15.81	0.00	2.207	18.64	0.00	6.5	93.5	0.0	0.26	1.41	0.67	0.73	—	12468	1492	4	0	0	0	0	logfile
✔	7o6P	12739	2023-02-18	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.002	0.47	0.0	0.04	13.52	0.00	2.251	5.96	0.00	2.0	98.0	0.0	2.22	0.39	0.90	0.92	5.36	8276	1022	8	0	0	268	0	logfile
✔	7Ji0	22341	2023-02-17	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.94	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.002	0.47	0.0	0.04	15.32	0.00	2.210	3.66	2.96	3.8	96.2	0.0	1.47	0.45	0.70	0.83	3.46	3556	432	4	0	0	0	0	logfile
✔	6VAK	21141	2023-02-24	2019-12-17	3.48	3.85	—	3.8	0.004	0.77	0.0	0.04	14.36	0.00	2.047	7.47	2.96	8.2	91.8	0.0	-2.80	0.73	0.81	3.28	3.8	0.002	0.58	0.0	0.03	16.38	0.00	2.190	5.71	0.72	5.9	94.1	0.0	2.31	0.55	0.70	0.82	2.80	22781	2992	11	0	0	0	0	logfile
✔	7XVG	33486	2023-02-17	2022-05-23	3.6	3.89	—	3.8	0.004	0.73	0.0	0.05	14.26	0.00	2.074	12.84	0.28	5.9	94.0	0.1	-0.97	0.74	0.78	1.82	3.8	0.003	0.73	0.0	0.04	16.30	0.00	2.168	11.22	1.10	6.2	93.8	0.0	-0.75	0.54	0.75	0.78	1.22	6438	794	2	0	0	0	0	logfile
✔	8EZ0	28725	2023-02-22	2022-10-29	3.7	4.09	3.78	3.9	0.004	0.63	0.0	0.04	15.91	0.00	2.130	13.69	0.12	7.3	92.7	0.0	-1.65	0.85	0.82	2.02	3.9	0.014	0.72	0.0	0.04	16.52	0.01	2.158	13.94	0.24	7.3	92.7	0.0	-1.49	1.15	0.84	0.82	1.91	14640	1815	6	0	0	0	0	logfile
✔	7S9B	24931	2023-02-19	2021-09-20	4.2	4.16	—	4.0	0.006	0.82	0.0	0.05	11.72	0.00	2.213	19.98	0.78	9.9	89.8	0.3	-0.99	0.61	0.81	—	4.0	0.003	0.67	0.0	0.04	11.95	0.00	2.218	12.11	0.00	8.0	92.0	0.0	0.41	0.42	0.60	0.80	—	10458	1356	2	0	0	0	0	logfile
✔	7STH	25428	2023-02-22	2021-11-13	3.5	4.00	—	3.7	0.003	0.56	0.0	0.04	13.68	0.00	2.200	9.57	0.38	7.5	92.4	0.2	-1.32	0.85	0.83	2.05	3.8	0.003	0.59	0.0	0.04	15.02	0.00	2.160	11.21	0.13	6.2	93.8	0.1	-1.13	0.39	0.85	0.82	2.24	14010	1736	4	0	0	0	0	logfile
✔	6PR5	20457	2023-02-19	2019-07-10	3.3	3.71	—	3.6	0.008	0.78	0.0	0.05	22.82	0.00	1.963	13.80	0.71	1.4	98.3	0.3	-3.27	0.76	0.82	2.68	3.6	0.004	0.62	0.0	0.04	23.49	0.00	1.510	10.60	0.24	5.2	94.8	0.0	0.55	1.15	0.75	0.82	2.45	10194	960	10	124	6	0	0	logfile

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