Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Z4G	14496	2023-04-22	2022-03-03	3.64	4.65	3.78	3.9	0.003	0.48	0.0	0.03	13.82	0.00	2.209	12.71	1.03	1.9	98.1	0.0	1.30	0.85	0.76	0.95	3.9	0.004	0.63	0.0	0.04	16.40	0.00	2.177	20.20	0.19	3.8	96.1	0.1	0.93	2.10	0.86	0.78	0.70	12714	1188	4	144	0	0	0	logfile
✔	8HG1	34731	2023-04-23	2022-11-13	2.8	2.33	2.94	2.1	0.004	0.67	0.0	0.04	15.21	0.00	2.100	5.91	0.13	5.0	94.7	0.3	0.19	0.79	0.79	3.89	2.1	0.003	0.60	0.0	0.04	17.61	0.00	2.184	7.02	1.39	4.7	95.1	0.2	0.39	0.95	0.81	0.82	3.39	14155	1642	6	36	2	0	0	logfile
✔	7S4V	24835	2023-04-22	2021-09-09	3.28	3.87	—	3.7	0.003	0.54	0.0	0.04	17.44	0.00	2.202	4.81	0.00	5.0	95.0	0.0	-1.46	0.80	0.80	2.24	3.7	0.004	0.57	0.0	0.04	18.53	0.00	2.217	5.54	0.00	5.0	95.0	0.0	-0.71	0.56	0.85	0.87	2.01	12215	1122	4	145	0	0	0	logfile
✔	7T94	25751	2023-04-22	2021-12-17	3.16	2.39	—	2.1	0.007	0.93	2.0	0.06	12.20	0.00	2.081	8.29	0.12	5.3	94.7	0.0	-0.68	0.77	0.77	3.26	2.1	0.004	0.68	0.0	0.04	14.96	0.00	2.127	8.35	0.46	5.5	94.5	0.0	-0.03	0.96	0.78	0.80	2.68	8388	1113	6	0	2	1	0	logfile
✔	7LiS	23384	2023-04-27	2021-01-27	2.96	3.25	—	3.2	0.008	0.79	0.0	0.06	14.46	0.00	2.214	2.81	3.45	3.5	96.5	0.0	0.22	0.75	0.88	4.54	3.2	0.003	0.51	0.0	0.04	16.57	0.00	2.171	3.00	1.80	3.1	96.9	0.0	0.66	0.34	0.77	0.89	3.19	128880	15660	60	0	60	0	0	logfile
✔	7KCL	22812	2023-04-21	2020-10-06	3.14	3.19	—	3.2	0.004	0.62	0.0	0.04	15.74	0.00	2.009	10.47	0.00	4.7	95.3	0.0	-0.08	0.76	0.84	2.81	3.2	0.003	0.56	0.0	0.04	17.15	0.00	1.946	11.61	0.27	4.7	95.3	0.0	-0.07	0.88	0.76	0.87	2.71	10057	1249	5	0	6	0	0	logfile
✔	7V7R	31779	2023-04-27	2021-08-21	2.9	3.74	—	3.2	0.004	0.61	0.0	0.05	13.58	0.00	2.163	6.28	0.00	4.5	95.4	0.1	0.06	0.89	0.87	2.64	3.2	0.003	0.59	0.0	0.04	14.81	0.00	2.180	6.28	1.07	4.5	95.4	0.1	0.27	0.27	0.88	0.87	2.31	25362	3095	42	0	84	0	0	logfile
✔	7Uo9	26642	2023-04-26	2022-04-12	3.13	3.95	3.13	3.6	0.007	0.62	0.0	0.04	11.80	0.00	1.819	5.07	0.25	5.9	94.1	0.0	-0.67	0.88	0.82	3.15	3.6	0.003	0.49	0.0	0.04	12.82	0.00	1.831	6.64	0.08	3.8	96.2	0.0	0.60	1.60	0.87	0.80	2.94	23863	1375	12	67	4	245	11305	logfile
✔	7TW1	26147	2023-04-26	2022-02-06	4.6	3.99	—	3.8	0.003	0.74	0.0	0.05	13.82	0.00	2.117	7.55	0.08	2.5	97.5	0.0	-0.20	0.75	0.78	—	3.7	0.003	0.64	0.0	0.04	13.96	0.00	2.179	12.52	0.04	4.1	95.9	0.0	-0.25	1.17	0.75	0.79	—	23625	2993	4	0	0	0	0	logfile
✔	7Z4i	14498	2023-04-23	2022-03-03	3.12	3.94	3.16	3.5	0.003	0.46	0.0	0.04	15.03	0.00	2.236	7.91	0.58	1.5	98.5	0.0	0.81	0.86	0.82	2.56	3.5	0.004	0.51	0.0	0.04	16.22	0.00	2.153	9.27	0.17	2.2	97.8	0.0	1.51	2.26	0.87	0.84	2.63	13820	1338	5	137	2	0	0	logfile
✔	7B1D	11984	2023-04-21	2020-11-24	3.41	4.29	3.57	3.6	0.004	0.71	0.0	0.05	12.49	0.00	2.197	6.80	0.29	6.2	93.8	0.0	-1.47	0.88	0.82	4.03	3.6	0.005	0.69	0.0	0.04	13.58	0.00	2.160	10.73	0.29	9.5	90.5	0.0	-1.30	0.37	0.89	0.86	3.57	10967	1505	8	0	12	0	0	logfile
✔	7V7Q	31778	2023-04-27	2021-08-21	2.8	3.73	—	3.2	0.004	0.58	0.0	0.05	13.81	0.00	2.148	6.16	0.00	3.9	96.0	0.1	0.05	0.89	0.87	2.71	3.2	0.003	0.57	0.0	0.04	15.18	0.00	2.185	6.14	1.22	4.5	95.4	0.1	0.32	1.13	0.88	0.87	2.26	25371	3096	42	0	84	0	0	logfile
✔	7W0M	32244	2023-04-22	2021-11-18	3.71	2.51	3.74	2.2	0.005	0.81	0.0	0.05	13.41	0.00	2.230	11.46	0.00	5.6	94.4	0.0	-1.90	0.73	0.74	2.42	2.2	0.004	0.73	0.0	0.04	16.46	0.00	2.111	11.18	0.82	6.9	93.1	0.0	-1.43	0.44	0.74	0.75	2.07	8929	1134	6	0	1	0	0	logfile
✔	8DTi	27699	2023-04-21	2022-07-25	3.8	3.87	—	3.8	0.006	0.66	0.0	0.04	13.31	0.00	2.196	4.70	0.00	2.9	97.1	0.0	1.82	0.81	0.76	2.21	3.8	0.002	0.55	0.0	0.04	15.22	0.00	2.204	8.20	0.43	2.3	97.7	0.0	1.89	0.40	0.82	0.79	2.07	9455	1258	4	0	2	0	0	logfile
✔	7V0M	26944	2023-04-20	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.003	0.49	0.0	0.04	18.18	0.00	2.176	4.37	2.33	3.3	96.7	0.0	1.83	0.25	0.55	0.88	4.09	3724	483	4	0	0	60	0	logfile
✔	6YUZ	10936	2023-04-21	2020-04-27	2.8	2.85	2.72	2.9	0.006	0.58	1.0	0.05	13.44	0.00	2.235	6.04	2.33	3.8	95.9	0.3	-3.67	0.66	0.85	3.38	2.9	0.003	0.59	0.0	0.04	15.01	0.00	2.220	7.40	2.33	5.3	94.5	0.2	-0.73	1.83	0.67	0.91	3.87	9782	1188	4	0	10	0	0	logfile
✔	7V7S	31780	2023-04-27	2021-08-21	3.0	3.84	—	3.3	0.004	0.59	0.0	0.05	13.81	0.00	2.197	7.39	0.00	3.9	96.0	0.0	0.13	0.88	0.86	1.94	3.3	0.007	0.66	0.0	0.05	15.26	0.00	2.137	8.91	1.11	5.4	94.6	0.0	0.01	0.30	0.87	0.86	1.96	25255	3088	39	0	81	0	0	logfile
✔	8HDo	34676	2023-04-20	2022-11-05	2.87	2.99	2.95	3.2	0.004	0.61	0.0	0.04	14.07	0.00	2.069	9.59	0.12	1.5	98.5	0.0	-1.31	0.63	0.77	1.80	3.2	0.003	0.57	0.0	0.04	15.87	0.00	2.140	10.02	3.11	2.5	97.5	0.0	0.97	1.03	0.65	0.85	2.74	8277	1028	5	0	8	0	0	logfile
✔	7URF	26711	2023-04-20	2022-04-21	2.8	2.78	2.80	2.9	0.009	0.78	0.0	1.24	17.48	0.00	2.148	5.35	0.00	3.1	96.9	0.0	-0.96	0.62	0.88	3.48	2.9	0.003	1.86	0.0	0.20	17.84	0.00	2.159	5.35	1.93	3.9	96.1	0.0	1.85	2.43	0.63	0.89	2.92	6133	722	5	0	8	0	0	logfile
✔	7V2o	31658	2023-04-19	2021-08-09	3.5	3.22	3.31	3.0	0.008	1.12	2.0	0.10	16.74	0.00	2.203	6.79	0.18	5.3	94.5	0.2	-0.53	0.81	0.84	2.00	3.0	0.006	0.68	0.0	0.04	17.20	0.01	2.071	11.50	0.41	6.4	93.5	0.1	-0.38	0.37	0.80	0.83	1.99	53005	2624	24	1487	2	0	0	logfile

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