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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6VX6 | 21431 | 2024-03-16 | 2020-02-21 | 3.0 | 3.24 | — | 3.2 | 0.005 | 0.82 | 0.0 | 0.05 | 14.09 | 0.00 | 2.260 | 4.77 | 0.94 | 1.9 | 98.1 | 0.0 | -5.69 | 0.76 | 0.87 | 3.72 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 16.32 | 0.00 | 2.062 | 7.65 | 1.82 | 1.5 | 98.5 | 0.0 | 0.68 | 0.97 | 0.77 | 0.89 | 3.37 | 15061 | 1830 | 10 | 0 | 6 | 0 | 0 | logfile |
✔ | 6Fo1 | 4287 | 2024-03-16 | 2018-02-05 | 3.57 | 3.71 | — | 3.6 | 0.007 | 0.82 | 0.0 | 0.04 | 10.81 | 0.00 | 2.039 | 23.07 | 0.06 | 6.1 | 93.9 | 0.1 | -3.76 | 0.83 | 0.85 | 2.87 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 15.65 | 0.00 | 2.197 | 9.78 | 1.62 | 3.8 | 96.1 | 0.1 | 0.24 | 0.78 | 0.83 | 0.84 | 2.18 | 15645 | 2012 | 13 | 0 | 6 | 0 | 0 | logfile |
✔ | 8J2F | 35948 | 2024-03-10 | 2023-04-14 | 3.07 | 3.19 | 2.97 | 3.2 | 0.005 | 1.21 | 2.0 | 0.09 | 10.87 | 0.00 | 2.473 | 2.70 | 0.63 | 1.6 | 98.4 | 0.0 | 3.43 | 0.66 | 0.86 | 4.25 | 3.2 | 0.006 | 0.64 | 0.0 | 0.04 | 14.91 | 0.00 | 2.223 | 4.82 | 1.88 | 1.8 | 98.2 | 0.0 | 2.21 | 1.85 | 0.69 | 0.90 | 4.07 | 6164 | 768 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7USC | 26732 | 2024-03-18 | 2022-04-25 | 3.0 | 3.26 | 2.98 | 3.1 | 0.007 | 0.62 | 0.0 | 0.04 | 14.12 | 0.00 | 2.130 | 6.55 | 0.00 | 3.0 | 97.0 | 0.0 | 1.36 | 0.90 | 0.87 | 2.78 | 3.1 | 0.003 | 0.53 | 0.0 | 0.04 | 16.33 | 0.00 | 2.224 | 4.50 | 0.82 | 1.4 | 98.6 | 0.0 | 2.86 | 0.50 | 0.91 | 0.90 | 2.33 | 21709 | 2673 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2024-03-16 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 11.10 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 6VCD | 21149 | 2024-03-11 | 2019-12-20 | 3.0 | 3.21 | — | 3.2 | 0.005 | 0.70 | 0.0 | 0.04 | 14.13 | 0.00 | 2.170 | 9.40 | 0.11 | 10.1 | 89.7 | 0.2 | -4.83 | 0.73 | 0.82 | 3.84 | 3.2 | 0.002 | 0.61 | 0.0 | 0.04 | 16.36 | 0.00 | 2.177 | 10.09 | 2.68 | 7.8 | 92.1 | 0.1 | -1.57 | 0.43 | 0.72 | 0.83 | 2.56 | 8082 | 1033 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 8DBD | 27280 | 2024-03-20 | 2022-06-14 | 3.2 | 3.20 | 3.28 | 3.2 | 0.007 | 0.77 | 0.0 | 0.06 | 15.09 | 0.00 | 2.119 | 5.93 | 2.74 | 3.3 | 96.7 | 0.0 | 0.45 | 0.65 | 0.77 | 3.28 | 3.2 | 0.003 | 0.52 | 0.0 | 0.05 | 16.30 | 0.00 | 2.089 | 7.64 | 2.61 | 4.0 | 96.0 | 0.0 | 0.94 | 1.29 | 0.66 | 0.85 | 3.07 | 28464 | 3708 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 6TTU | 10585 | 2024-03-15 | 2019-12-30 | 3.7 | 3.87 | 3.69 | 3.8 | 0.006 | 0.88 | 0.0 | 0.05 | 15.10 | 0.00 | 1.312 | 13.58 | 0.29 | 9.3 | 90.7 | 0.0 | -2.77 | 0.82 | 0.80 | 1.42 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 17.15 | 0.00 | 2.177 | 11.01 | 2.84 | 6.3 | 93.7 | 0.0 | -0.10 | 1.62 | 0.82 | 0.81 | 1.42 | 12746 | 1604 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 7EoS | 31229 | 2024-03-19 | 2021-04-22 | 3.9 | 4.43 | — | 3.9 | 0.002 | 0.42 | 0.0 | 0.04 | 9.75 | 0.00 | 2.254 | 6.49 | 1.89 | 4.1 | 95.8 | 0.1 | 0.47 | 0.88 | 0.78 | 1.32 | 4.0 | 0.002 | 0.65 | 0.0 | 0.04 | 12.37 | 0.00 | 2.048 | 12.13 | 1.93 | 5.5 | 94.4 | 0.1 | -0.39 | 1.68 | 0.90 | 0.82 | 1.19 | 24600 | 3106 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 7WBB | 32396 | 2024-03-22 | 2021-12-16 | 3.6 | 3.64 | — | 3.5 | 0.002 | 0.55 | 2.0 | 0.04 | 14.72 | 0.00 | 2.206 | 9.66 | 0.11 | 5.0 | 94.6 | 0.3 | 0.91 | 0.80 | 0.74 | 0.62 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 15.64 | 0.00 | 2.152 | 11.63 | 2.50 | 6.0 | 93.6 | 0.4 | 0.28 | 1.91 | 0.83 | 0.81 | 1.08 | 33634 | 4329 | 13 | 0 | 33 | 0 | 0 | logfile |
✔ | 7WoA | 32646 | 2024-03-22 | 2022-01-21 | 3.25 | 2.98 | — | 3.2 | 0.002 | 0.45 | 0.0 | 0.04 | 9.46 | 0.00 | 2.229 | 6.56 | 4.23 | 3.8 | 96.2 | 0.0 | -3.46 | 0.86 | 0.78 | 2.52 | 3.2 | 0.004 | 0.67 | 0.0 | 0.05 | 13.98 | 0.00 | 2.139 | 11.13 | 3.68 | 7.9 | 92.1 | 0.0 | -2.07 | 1.17 | 0.89 | 0.85 | 2.78 | 31952 | 4060 | 10 | 0 | 39 | 0 | 0 | logfile |
✔ | 7DK4 | 30702 | 2024-03-22 | 2020-11-23 | 3.8 | 3.20 | — | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 7.92 | 0.00 | 2.106 | 1.33 | 0.15 | 2.8 | 97.2 | 0.0 | -3.26 | 0.58 | 0.47 | 1.13 | 3.1 | 0.003 | 0.68 | 0.0 | 0.04 | 14.99 | 0.00 | 2.075 | 16.68 | 3.15 | 5.9 | 94.1 | 0.0 | -1.54 | 1.49 | 0.72 | 0.66 | 1.43 | 34707 | 4470 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S1M | 24805 | 2024-03-14 | 2021-09-02 | 2.41 | 2.95 | 2.09 | 2.8 | 0.003 | 0.51 | 0.0 | 0.04 | 13.54 | 0.00 | 2.233 | 4.89 | 0.10 | 1.9 | 98.1 | 0.0 | 1.84 | 0.81 | 0.87 | 3.93 | 2.8 | 0.003 | 0.54 | 0.0 | 0.04 | 16.08 | 0.00 | 2.179 | 5.62 | 1.67 | 1.7 | 98.3 | 0.0 | 1.74 | 0.92 | 0.77 | 0.87 | 3.71 | 9160 | 1168 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6V6B | 21067 | 2024-03-14 | 2019-12-04 | 3.8 | 3.96 | — | 3.9 | 0.005 | 0.55 | 0.0 | 0.04 | 14.36 | 0.00 | 2.211 | 5.33 | 0.00 | 5.1 | 94.9 | 0.0 | -5.29 | 0.54 | 0.84 | 1.85 | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 16.91 | 0.00 | 2.219 | 6.21 | 3.00 | 3.0 | 97.0 | 0.0 | -0.36 | 0.50 | 0.53 | 0.83 | 0.78 | 9115 | 1111 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TVE | 26140 | 2024-03-16 | 2022-02-04 | 3.8 | 4.04 | — | 4.0 | 0.005 | 0.86 | 0.0 | 0.05 | 19.05 | 0.00 | 2.213 | 17.42 | 3.26 | 13.4 | 86.3 | 0.3 | -4.24 | 0.73 | 0.69 | 1.65 | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 19.82 | 0.00 | 2.163 | 13.33 | 3.57 | 8.4 | 91.5 | 0.1 | -1.64 | 0.74 | 0.75 | 0.72 | 0.95 | 15456 | 1793 | 8 | 54 | 1 | 0 | 0 | logfile |
✔ | 7X75 | 33032 | 2024-03-22 | 2022-03-09 | 3.45 | 3.68 | 3.54 | 3.6 | 0.004 | 0.75 | 1.0 | 0.05 | 19.86 | 0.00 | 1.963 | 4.97 | 0.66 | 3.2 | 96.8 | 0.0 | 0.42 | 0.78 | 0.73 | 1.36 | 3.6 | 0.004 | 0.68 | 0.0 | 0.04 | 20.57 | 0.00 | 2.022 | 13.02 | 3.22 | 3.0 | 97.0 | 0.0 | 0.12 | 0.60 | 0.81 | 0.79 | 1.28 | 34872 | 4055 | 22 | 168 | 21 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2024-03-12 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Si3 | 25137 | 2024-03-16 | 2021-10-12 | 3.19 | 3.21 | — | 3.2 | 0.003 | 1.19 | 0.0 | 0.04 | 13.00 | 0.00 | 2.038 | 2.15 | 0.00 | 1.5 | 98.5 | 0.0 | 3.72 | 0.48 | 0.77 | 1.74 | 3.1 | 0.003 | 0.86 | 0.0 | 0.04 | 14.43 | 0.00 | 1.918 | 4.07 | 0.55 | 2.6 | 97.4 | 0.0 | 2.03 | 0.94 | 0.51 | 0.82 | 2.32 | 13500 | 873 | 1 | 0 | 2 | 0 | 6901 | logfile |
✔ | 6VBU | 21144 | 2024-03-21 | 2019-12-19 | 3.1 | 3.24 | 3.18 | 3.2 | 0.005 | 0.69 | 1.0 | 0.05 | 14.74 | 0.00 | 2.096 | 12.13 | 0.24 | 6.5 | 93.5 | 0.0 | -3.06 | 0.73 | 0.75 | 2.48 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 16.81 | 0.00 | 2.108 | 11.87 | 3.06 | 5.2 | 94.8 | 0.0 | -0.30 | 0.62 | 0.75 | 0.80 | 2.20 | 30209 | 3820 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 7UD5 | 26454 | 2024-03-19 | 2022-03-18 | 4.25 | 4.38 | 4.20 | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 22.04 | 0.00 | 2.144 | 12.64 | 1.50 | 7.6 | 92.4 | 0.0 | -2.04 | 0.72 | 0.60 | — | 4.2 | 0.004 | 0.65 | 0.0 | 0.04 | 22.40 | 0.00 | 2.148 | 17.62 | 0.06 | 9.1 | 90.9 | 0.0 | -2.26 | 0.51 | 0.76 | 0.66 | — | 22713 | 2106 | 18 | 292 | 1 | 0 | 0 | logfile |