Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6C9i	7436	2021-01-06	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.75	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.003	0.43	0.0	0.04	13.86	0.00	2.266	5.92	0.00	0.0	100.0	0.0	3.58	2.43	0.73	0.88	3.91	23700	3087	24	0	0	0	0	logfile
✔	6MRT	9212	2021-01-07	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.002	0.45	0.0	0.03	12.40	0.00	2.199	3.20	0.00	0.3	99.7	0.0	5.55	3.07	0.69	0.83	2.50	26868	3420	12	0	0	0	0	logfile
✔	6PXM	20521	2021-01-07	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.61	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.45	0.0	0.03	17.54	0.00	2.190	3.52	0.29	1.8	98.2	0.0	5.32	1.48	0.78	0.88	4.13	32736	4080	24	0	0	0	0	logfile
✔	6U6i	20666	2021-01-07	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	5.98	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.002	0.46	0.0	0.04	11.71	0.00	2.101	5.39	0.00	4.8	95.2	0.0	0.05	1.18	0.80	0.80	4.29	21701	1496	8	0	11	0	10337	logfile
✔	6MRU	9213	2021-01-08	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.47	0.0	0.03	12.27	0.00	2.209	3.00	0.00	0.9	99.1	0.0	5.56	3.08	0.74	0.84	2.05	29107	3705	13	0	0	0	0	logfile
✔	6o0Z	0585	2021-01-05	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.47	0.0	0.03	15.73	0.00	2.149	4.26	0.00	5.3	94.7	0.0	0.13	0.37	0.85	0.87	3.52	11912	1288	4	135	0	0	0	logfile
✔	6UZZ	20965	2021-01-06	2019-11-16	3.1	3.48	—	3.4	0.009	0.92	0.0	0.06	10.61	0.01	2.325	2.53	0.24	1.8	98.0	0.2	-4.22	0.60	0.81	3.12	3.4	0.002	0.47	0.0	0.04	13.40	0.00	2.255	6.11	0.00	2.2	97.8	0.0	3.30	1.62	0.58	0.78	2.02	15832	1984	12	0	8	0	0	logfile
✔	6U5S	20654	2021-01-07	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	5.93	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.003	0.48	0.0	0.04	12.66	0.00	1.442	6.19	0.00	2.8	97.2	0.0	0.23	1.25	0.82	0.81	4.16	21461	1504	8	0	20	0	9755	logfile
✔	7JLW	22382	2021-01-07	2020-07-30	2.5	2.52	2.49	2.5	0.009	1.07	0.0	0.07	15.05	0.00	2.377	3.99	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.002	0.48	0.0	0.04	15.49	0.00	2.070	6.86	1.23	0.8	99.2	0.0	3.32	1.01	0.64	0.83	4.06	40284	2316	36	0	132	204	18720	logfile
✔	6DWB	8924	2021-01-06	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.48	0.0	0.03	11.88	0.00	2.131	3.66	0.05	3.4	96.6	0.0	4.38	1.14	0.76	0.89	3.78	18360	2340	30	0	0	0	0	logfile
✔	6QJM	4564	2021-01-05	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.002	0.49	0.0	0.05	11.35	0.00	2.142	5.05	0.00	3.0	97.0	0.0	-2.10	1.59	0.31	0.71	3.94	846	111	3	0	0	0	0	logfile
✔	6RJA	4901	2021-01-06	2019-04-26	3.0	3.11	—	3.1	0.005	0.86	0.0	0.05	14.79	0.01	2.314	2.75	0.23	5.8	94.2	0.0	-3.51	0.64	0.81	2.74	3.1	0.002	0.49	0.0	0.03	13.50	0.00	2.214	5.66	0.06	3.5	96.5	0.0	-0.28	0.52	0.64	0.80	2.47	20372	1996	8	194	0	0	0	logfile
✔	5AJ0	2875	2021-01-13	2015-02-19	3.5	11.12	—	—	0.011	1.61	31.0	0.09	16.14	0.01	0.414	42.35	8.00	5.7	89.8	4.5	0.77	0.00	0.00	0.09	—	0.002	0.49	0.0	0.03	14.29	0.00	2.038	10.20	0.00	5.8	93.5	0.7	0.52	1.52	0.00	0.00	0.13	218559	11738	106	5776	355	0	0	logfile
✔	6PUW	20483	2021-01-05	2019-07-18	2.9	3.21	2.93	3.1	0.005	0.61	0.0	0.04	19.86	0.00	0.000	7.60	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.004	0.49	0.0	0.04	19.17	0.00	0.000	7.36	0.00	2.8	97.2	0.0	0.48	0.89	0.69	0.88	4.44	11116	1170	28	72	10	312	0	logfile
✔	6NT9	0506	2021-01-05	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.002	0.49	0.0	0.04	13.23	0.00	2.158	4.09	0.00	2.0	98.0	0.0	2.48	0.60	0.82	0.85	3.24	9906	1228	4	0	0	0	0	logfile
✔	7JMC	22391	2021-01-07	2020-07-31	2.5	2.76	2.68	2.7	0.009	0.75	0.0	0.06	13.91	0.01	2.249	2.74	0.57	1.6	98.4	0.0	3.40	0.62	0.82	4.76	2.7	0.002	0.49	0.0	0.04	14.30	0.00	2.170	5.65	0.90	1.4	98.6	0.0	3.71	0.57	0.62	0.83	4.10	39828	2304	36	0	144	168	18576	logfile
✔	6V3K	21038	2021-01-05	2019-11-25	3.4	3.77	3.45	3.7	0.006	0.72	0.0	0.04	19.45	0.01	1.659	9.64	0.19	4.9	95.1	0.0	-2.30	0.76	0.88	3.33	3.7	0.003	0.49	0.0	0.04	18.60	0.00	1.983	7.78	0.00	2.8	97.2	0.0	0.67	1.18	0.67	0.87	3.32	11314	1226	16	72	10	0	0	logfile
✔	6RJ9	4900	2021-01-05	2019-04-26	3.2	3.37	—	3.3	0.006	0.78	0.0	0.05	15.21	0.01	2.292	2.59	0.28	6.7	93.3	0.0	-3.87	0.67	0.86	2.60	3.3	0.002	0.49	0.0	0.04	14.44	0.00	2.238	5.05	0.00	4.1	95.9	0.0	-0.26	0.42	0.67	0.85	2.45	11874	1202	5	97	0	0	0	logfile
✔	6YYT	11007	2021-01-05	2020-05-06	2.9	3.28	3.09	3.2	0.003	0.48	0.0	0.04	14.59	0.00	2.258	2.82	0.36	2.9	97.1	0.0	-0.98	0.80	0.82	2.65	3.2	0.002	0.49	0.0	0.04	13.00	0.00	2.244	6.96	0.00	2.4	97.6	0.0	1.53	0.49	0.80	0.84	2.97	11375	1298	9	54	2	0	0	logfile
✔	6RWL	10041	2021-01-06	2019-06-05	3.36	3.67	3.45	3.6	0.003	0.56	0.0	0.04	16.02	0.00	2.348	2.63	2.86	3.1	96.9	0.0	-3.04	0.70	0.83	2.24	3.6	0.003	0.50	0.0	0.04	17.20	0.00	2.211	5.26	0.00	3.3	96.7	0.0	1.18	0.72	0.70	0.83	2.35	18272	2076	24	86	8	0	0	logfile

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