Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZQ	24774	2022-07-02	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.81	0.82	1.87	2421	322	6	0	0	0	0	logfile
✔	7RZT	24777	2022-07-02	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.54	0.00	2.332	5.44	0.35	0.0	100.0	0.0	6.21	0.24	0.80	0.82	3.03	2451	324	6	0	0	0	0	logfile
✔	7RZR	24775	2022-07-02	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.35	0.0	0.03	15.28	0.00	2.325	4.84	0.35	0.0	100.0	0.0	6.56	0.32	0.81	0.82	3.42	2448	324	6	0	0	0	0	logfile
✔	7RZV	24779	2022-07-02	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.90	0.00	2.235	5.24	0.34	0.0	100.0	0.0	5.91	0.88	0.83	0.82	1.88	2562	339	6	0	0	0	0	logfile
✔	6ZLG	11265	2022-07-06	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.60	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.003	0.39	0.0	0.03	17.79	0.00	2.131	6.39	3.02	1.5	98.5	0.0	5.23	1.17	0.81	0.89	2.69	33008	4072	24	0	0	0	0	logfile
✔	7RZS	24776	2022-07-02	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.43	0.0	0.04	15.95	0.00	2.318	4.66	0.71	0.0	100.0	0.0	5.82	1.18	0.78	0.81	1.27	2445	324	6	0	0	0	0	logfile
✔	7MGM	23829	2022-07-05	2021-04-12	3.1	3.35	3.11	3.0	0.004	0.55	0.0	0.04	14.02	0.00	1.874	6.13	0.04	2.4	97.6	0.0	0.78	0.87	0.89	2.62	3.0	0.002	0.43	0.0	0.04	14.90	0.00	1.981	5.99	0.07	1.8	98.2	0.0	1.66	0.21	0.87	0.90	2.25	24079	2964	4	0	6	0	0	logfile
✔	6ZNH	11311	2022-07-04	2020-07-06	3.6	3.61	3.56	3.6	0.006	0.84	0.0	0.04	13.44	0.00	2.160	4.03	3.03	2.6	97.4	0.0	0.52	0.57	0.83	1.42	3.6	0.002	0.44	0.0	0.03	15.61	0.00	2.229	4.24	0.20	1.4	98.6	0.0	4.86	1.15	0.57	0.82	1.34	14191	1817	23	0	0	0	0	logfile
✔	6PXM	20521	2022-07-06	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.44	0.0	0.03	17.75	0.00	2.211	4.41	0.14	1.8	98.2	0.0	5.26	1.48	0.79	0.90	3.80	32736	4080	24	0	0	0	0	logfile
✔	6QPi	4614	2022-07-02	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	7PXE	13700	2022-07-06	2021-10-08	2.38	2.90	2.41	2.7	0.005	0.73	0.0	0.04	16.55	0.00	2.151	5.38	1.94	1.0	99.0	0.0	1.17	0.79	0.87	3.74	2.7	0.002	0.44	0.0	0.04	16.04	0.00	2.159	5.12	2.20	1.2	98.8	0.0	1.73	0.33	0.79	0.89	4.24	28928	3540	12	0	36	136	0	logfile
✔	7LGU	23329	2022-07-03	2021-01-21	2.3	2.77	—	2.7	0.003	0.93	0.0	0.04	14.18	0.00	2.197	8.32	1.15	1.6	98.4	0.0	1.41	0.64	0.84	5.76	2.7	0.002	0.45	0.0	0.04	14.54	0.00	2.136	5.26	0.71	1.8	98.2	0.0	1.55	0.22	0.64	0.85	5.47	11597	1360	6	0	110	111	0	logfile
✔	7MQH	23947	2022-07-05	2021-05-05	3.1	3.00	3.04	3.2	0.007	0.81	0.0	0.06	12.35	0.00	2.350	2.93	0.00	1.0	99.0	0.0	0.95	0.79	0.86	5.69	3.2	0.002	0.45	0.0	0.04	13.57	0.00	2.290	4.82	0.66	1.9	98.1	0.0	1.09	0.37	0.82	0.88	5.19	12736	1640	16	16	0	0	0	logfile
✔	7RQZ	24641	2022-07-06	2021-08-08	3.32	3.07	—	3.3	0.011	0.96	0.0	0.06	17.06	0.00	2.073	6.78	0.00	4.8	95.2	0.0	0.73	0.59	0.73	1.63	3.3	0.003	0.45	0.0	0.03	16.29	0.00	2.107	5.24	0.00	3.8	96.2	0.0	1.03	0.28	0.59	0.75	1.54	32740	2128	8	0	20	0	15608	logfile
✔	7ooA	13008	2022-07-04	2021-05-27	2.7	2.63	2.63	2.6	0.006	0.73	0.0	0.05	15.29	0.00	2.256	5.81	0.00	0.4	99.6	0.0	2.71	0.71	0.86	4.30	2.6	0.002	0.45	0.0	0.04	16.94	0.00	2.220	5.75	1.15	1.3	98.7	0.0	1.77	1.12	0.71	0.87	3.94	15610	1834	14	0	35	0	0	logfile
✔	7JGG	22326	2022-07-03	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.46	0.0	0.03	12.61	0.00	1.976	80.83	0.00	4.5	95.5	0.0	1.72	1.70	0.67	0.69	—	4210	506	1	0	0	0	28	logfile
✔	6MRU	9213	2022-07-03	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	7SFK	25091	2022-07-03	2021-10-04	2.74	2.96	—	3.1	0.008	0.97	0.0	0.04	18.02	0.01	2.265	3.74	0.43	1.8	98.2	0.0	2.37	0.74	0.84	3.90	3.0	0.002	0.46	0.0	0.04	17.03	0.01	2.165	5.17	0.43	2.5	97.5	0.0	1.20	0.33	0.68	0.84	3.89	7419	852	9	0	24	57	0	logfile
✔	7oNJ	12996	2022-07-04	2021-05-25	2.3	2.52	2.24	2.5	0.011	0.97	0.0	0.06	18.45	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.003	0.46	0.0	0.04	18.21	0.00	2.171	7.75	0.47	0.8	99.2	0.0	2.22	1.55	0.76	0.89	4.35	16947	1834	21	0	63	266	0	logfile
✔	7oo6	13006	2022-07-04	2021-05-26	3.1	2.92	2.88	3.0	0.005	0.63	0.0	0.05	10.97	0.00	2.327	9.05	0.00	1.5	98.5	0.0	2.48	0.63	0.80	2.67	3.0	0.003	0.46	0.0	0.04	13.94	0.00	2.358	7.46	0.20	1.3	98.7	0.0	2.23	1.13	0.65	0.83	2.25	14546	1827	14	0	14	0	0	logfile

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