Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZLG	11265	2021-08-10	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.60	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.002	0.37	0.0	0.03	17.92	0.00	2.140	5.93	2.64	1.5	98.5	0.0	5.31	1.61	0.82	0.89	2.59	33008	4072	24	0	0	0	0	logfile
✔	6C9i	7436	2021-08-09	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.75	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.002	0.40	0.0	0.04	14.99	0.00	2.212	4.63	0.04	0.0	100.0	0.0	4.18	2.43	0.73	0.89	3.60	23700	3087	24	0	0	0	0	logfile
✔	6PXM	20521	2021-08-10	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.61	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.43	0.0	0.03	17.65	0.00	2.202	3.26	0.09	1.8	98.2	0.0	5.35	1.49	0.78	0.89	3.87	32736	4080	24	0	0	0	0	logfile
✔	6WL1	21815	2021-08-08	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.003	0.45	0.0	0.03	16.27	0.00	2.295	7.01	1.18	0.0	100.0	0.0	6.53	0.73	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	6ZNH	11311	2021-08-08	2020-07-06	3.6	3.61	3.56	3.6	0.006	0.84	0.0	0.04	13.44	0.00	2.160	4.03	3.03	2.6	97.4	0.0	0.52	0.57	0.83	1.42	3.6	0.002	0.45	0.0	0.03	15.46	0.00	2.244	3.85	0.66	1.5	98.5	0.0	5.09	1.16	0.56	0.81	1.31	14191	1817	23	0	0	0	0	logfile
✔	7JGG	22326	2021-08-07	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	53.16	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.002	0.45	0.0	0.03	12.94	0.00	1.962	82.28	0.00	6.3	93.7	0.0	1.62	1.84	0.68	0.70	—	4210	506	1	0	0	0	28	logfile
✔	3J89	6123	2021-08-07	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.46	0.0	0.03	20.47	0.00	2.143	7.98	0.75	0.2	99.8	0.0	4.21	2.00	0.81	0.79	0.30	9025	551	19	0	0	0	4598	logfile
✔	7JGF	22325	2021-08-07	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.40	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.46	0.0	0.04	13.27	0.00	2.169	51.21	0.41	5.3	94.7	0.0	1.46	0.77	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	6WCB	21605	2021-08-08	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.002	0.47	0.0	0.03	15.68	0.00	2.040	3.62	0.00	1.5	98.5	0.0	3.79	1.32	0.56	0.79	2.12	11647	734	6	0	7	40	5904	logfile
✔	6VPS	21316	2021-08-07	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.002	0.48	0.0	0.03	19.69	0.00	2.391	3.50	1.63	6.9	93.1	0.0	-3.67	1.20	0.47	0.87	6.71	2736	279	9	0	0	0	0	logfile
✔	6U5S	20654	2021-08-10	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	5.93	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.003	0.48	0.0	0.04	13.66	0.00	2.129	6.89	0.00	3.4	96.6	0.0	0.18	1.25	0.84	0.85	4.11	21461	1504	8	0	20	0	9755	logfile
✔	6MRU	9213	2021-08-08	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.48	0.0	0.03	13.33	0.00	2.202	3.21	0.06	1.2	98.8	0.0	5.39	3.90	0.76	0.86	1.88	29107	3705	13	0	0	0	0	logfile
✔	6WCC	21606	2021-08-08	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.002	0.48	0.0	0.03	15.76	0.00	2.209	5.34	0.16	2.3	97.7	0.0	4.55	1.70	0.54	0.79	1.80	11629	734	6	0	5	12	5908	logfile
✔	6XKY	22229	2021-08-11	2020-06-27	3.2	3.13	3.17	3.2	0.006	0.55	0.0	0.03	10.04	0.00	1.588	4.66	0.48	1.5	98.5	0.0	2.67	0.52	0.86	2.05	3.2	0.004	0.48	0.0	0.03	14.15	0.00	2.043	4.50	0.26	1.9	98.1	0.0	3.59	0.50	0.52	0.88	1.80	38760	5420	20	0	0	0	0	logfile
✔	6ZBJ	11156	2021-08-11	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.8	0.003	0.48	0.0	0.03	15.18	0.00	2.076	3.39	0.09	0.5	99.5	0.0	4.27	1.33	0.88	0.83	1.22	39212	2334	4	0	0	0	19864	logfile
✔	6U6i	20666	2021-08-10	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	5.98	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.003	0.48	0.0	0.04	12.86	0.00	2.097	5.80	0.00	5.6	94.4	0.0	0.11	0.53	0.82	0.84	4.21	21701	1496	8	0	11	0	10337	logfile
✔	6ZBC	11150	2021-08-09	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	0.97	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.48	0.0	0.03	15.15	0.00	2.042	4.10	0.00	1.1	98.9	0.0	4.73	0.89	0.86	0.82	1.38	19534	1160	4	0	0	0	9902	logfile
✔	6MRT	9212	2021-08-08	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.39	0.00	2.218	3.12	1.36	0.4	99.6	0.0	5.29	3.08	0.73	0.86	2.53	26868	3420	12	0	0	0	0	logfile
✔	7Ji0	22341	2021-08-07	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.80	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.003	0.49	0.0	0.04	15.44	0.00	2.216	3.94	1.97	3.6	96.4	0.0	1.47	0.45	0.71	0.83	3.56	3556	432	4	0	0	0	0	logfile
✔	7KJR	22898	2021-08-07	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	16.37	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.002	0.49	0.0	0.04	15.85	0.00	2.118	9.22	0.99	2.3	97.7	0.0	1.42	0.42	0.67	0.86	4.21	3840	448	8	0	2	122	0	logfile

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