Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6C9i	7436	2021-05-05	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.75	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.003	0.41	0.0	0.04	15.04	0.00	2.218	4.57	0.16	0.0	100.0	0.0	3.94	2.43	0.72	0.86	3.70	23700	3087	24	0	0	0	0	logfile
✔	7K0M	22602	2021-05-04	2020-09-04	2.9	3.38	—	3.3	0.005	0.74	0.0	0.04	13.68	0.00	2.218	4.67	0.00	2.3	97.7	0.0	1.05	0.62	0.79	3.49	3.3	0.002	0.45	0.0	0.04	15.15	0.00	2.208	5.29	0.93	1.7	98.3	0.0	1.50	0.40	0.62	0.78	2.92	18578	2342	14	0	16	0	0	logfile
✔	6VXM	21444	2021-05-04	2020-02-22	3.06	3.76	—	3.4	0.018	1.29	0.0	0.05	12.84	0.00	2.208	5.57	0.00	3.9	96.1	0.0	-2.02	0.75	0.81	2.38	3.4	0.002	0.45	0.0	0.04	13.21	0.00	2.292	5.18	0.12	1.7	98.3	0.0	1.94	1.20	0.73	0.85	2.51	15064	1939	14	0	21	0	0	logfile
✔	7JGG	22326	2021-05-03	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	53.16	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.002	0.45	0.0	0.03	13.00	0.00	1.958	77.93	0.00	5.7	94.3	0.0	1.99	1.80	0.66	0.56	—	4210	506	1	0	0	0	28	logfile
✔	6MRT	9212	2021-05-07	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.38	0.00	2.229	2.75	1.26	0.4	99.6	0.0	5.51	3.07	0.73	0.85	2.25	26868	3420	12	0	0	0	0	logfile
✔	6MRU	9213	2021-05-07	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.47	0.0	0.03	13.45	0.00	2.200	3.24	0.03	0.6	99.4	0.0	5.43	3.90	0.74	0.85	1.92	29107	3705	13	0	0	0	0	logfile
✔	6WL1	21815	2021-05-04	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.003	0.47	0.0	0.03	16.27	0.00	2.282	6.91	0.89	0.0	100.0	0.0	6.40	0.74	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	6VRS	21371	2021-05-04	2020-02-09	2.7	3.22	—	2.9	0.008	1.49	5.0	0.11	14.48	0.01	2.012	2.39	1.82	3.1	96.6	0.3	-0.31	0.95	0.92	6.32	2.9	0.002	0.47	0.0	0.04	15.20	0.00	1.783	5.70	0.17	2.2	97.8	0.0	2.27	1.01	0.94	0.91	4.30	12208	1548	12	0	8	16	0	logfile
✔	6U6i	20666	2021-05-05	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	5.98	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.002	0.47	0.0	0.04	12.89	0.00	2.085	5.71	0.00	5.3	94.7	0.0	0.16	0.51	0.81	0.83	4.09	21701	1496	8	0	11	0	10337	logfile
✔	6o0Z	0585	2021-05-04	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.47	0.0	0.03	16.48	0.00	2.156	4.03	0.41	4.8	95.2	0.0	0.22	0.35	0.85	0.88	3.22	11912	1288	4	135	0	0	0	logfile
✔	6RJ9	4900	2021-05-04	2019-04-26	3.2	3.37	—	3.3	0.006	0.78	0.0	0.05	15.21	0.01	2.292	2.59	0.28	6.7	93.3	0.0	-3.87	0.67	0.86	2.60	3.3	0.002	0.48	0.0	0.03	15.99	0.00	2.258	5.01	0.28	3.7	96.3	0.0	-0.27	0.97	0.67	0.86	1.86	11874	1202	5	97	0	0	0	logfile
✔	6U5S	20654	2021-05-05	2019-08-28	3.07	3.44	—	3.4	0.003	0.41	0.0	0.07	12.04	0.00	2.078	5.93	0.00	3.3	96.7	0.0	-3.21	0.81	0.80	4.41	3.3	0.004	0.48	0.0	0.04	13.65	0.00	2.138	6.54	0.00	3.3	96.7	0.0	0.21	1.25	0.83	0.84	4.06	21461	1504	8	0	20	0	9755	logfile
✔	7K0P	22606	2021-05-04	2020-09-04	3.1	3.68	—	3.6	0.006	0.77	0.0	0.04	14.41	0.00	2.183	5.21	0.00	2.5	97.5	0.0	0.92	0.69	0.82	3.20	3.6	0.002	0.48	0.0	0.04	15.17	0.00	2.165	5.19	0.21	2.0	98.0	0.0	1.57	0.31	0.69	0.82	2.59	18572	2342	14	0	15	0	0	logfile
✔	6VPS	21316	2021-05-03	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.003	0.48	0.0	0.03	19.95	0.00	2.357	3.30	1.31	6.9	93.1	0.0	-3.69	1.18	0.48	0.88	6.57	2736	279	9	0	0	0	0	logfile
✔	7K0J	22599	2021-05-03	2020-09-04	3.1	3.65	—	3.6	0.006	0.70	0.0	0.05	13.41	0.00	2.210	5.54	0.00	3.2	96.8	0.0	0.19	0.64	0.80	3.76	3.6	0.003	0.49	0.0	0.04	14.51	0.00	2.235	5.02	0.12	2.3	97.7	0.0	1.08	0.39	0.63	0.79	3.18	7683	977	5	0	3	0	0	logfile
✔	6SKY	10231	2021-05-05	2019-08-16	2.8	2.95	—	3.0	0.009	0.69	0.0	0.05	13.80	0.00	2.077	5.01	3.63	4.2	95.8	0.0	-2.12	0.75	0.85	2.69	3.0	0.002	0.49	0.0	0.04	16.68	0.00	2.109	5.23	2.60	2.3	97.7	0.0	1.68	2.20	0.75	0.85	2.30	22348	2824	4	0	4	0	0	logfile
✔	6o0X	0583	2021-05-04	2019-02-17	3.28	3.97	—	3.6	0.005	0.74	0.0	0.04	16.67	0.01	2.317	2.65	0.14	6.2	93.8	0.0	-4.06	0.85	0.88	2.75	3.6	0.002	0.49	0.0	0.03	17.13	0.00	2.221	5.80	0.14	3.9	96.1	0.0	-0.03	1.22	0.84	0.87	2.57	11257	1112	5	150	0	0	0	logfile
✔	7KJX	22901	2021-05-03	2020-10-26	3.1	3.33	—	3.3	0.006	0.66	0.0	0.04	14.07	0.01	2.100	5.38	0.12	2.3	97.7	0.0	0.94	0.71	0.81	2.85	3.3	0.003	0.49	0.0	0.04	15.39	0.00	2.071	7.23	0.00	2.3	97.7	0.0	0.71	0.47	0.74	0.85	3.04	8589	948	5	44	2	0	0	logfile
✔	7JLW	22382	2021-05-06	2020-07-30	2.5	2.52	2.49	2.5	0.009	1.07	0.0	0.07	15.05	0.00	2.377	3.99	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.002	0.49	0.0	0.04	15.54	0.00	2.070	6.97	1.28	0.8	99.2	0.0	3.29	0.77	0.63	0.84	4.08	40284	2316	36	0	132	204	18720	logfile
✔	6X0V	21985	2021-05-03	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	13.37	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	11.82	0.00	2.364	17.83	0.00	4.0	96.0	0.0	2.26	1.18	0.40	0.74	—	1384	211	4	0	0	0	62	logfile

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