Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZQ	24774	2023-07-03	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	7RZT	24777	2023-07-03	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.52	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.26	0.24	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	7RZR	24775	2023-07-03	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7RZV	24779	2023-07-03	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	8CZi	27098	2023-07-03	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.39	0.0	0.03	15.18	0.00	2.140	5.65	0.34	0.0	100.0	0.0	5.55	0.85	0.83	0.84	1.84	2550	339	6	0	0	0	0	logfile
✔	6ZLG	11265	2023-07-15	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.56	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.003	0.40	0.0	0.03	17.92	0.00	2.131	6.27	3.28	1.6	98.4	0.0	5.28	1.17	0.82	0.90	2.58	33008	4072	24	0	0	0	0	logfile
✔	7ZXP	15013	2023-07-09	2022-05-22	2.39	2.72	2.35	2.5	0.002	0.42	0.0	0.04	14.73	0.00	2.332	3.46	1.17	1.1	98.9	0.0	4.20	0.72	0.87	3.52	2.6	0.003	0.42	0.0	0.04	15.58	0.00	2.308	3.30	2.44	1.1	98.9	0.0	4.85	0.89	0.64	0.90	3.39	18420	2292	12	0	0	0	0	logfile
✔	7RZS	24776	2023-07-03	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.42	0.0	0.04	16.16	0.00	2.327	4.66	0.35	0.0	100.0	0.0	5.95	1.19	0.79	0.82	1.19	2445	324	6	0	0	0	0	logfile
✔	7oo6	13006	2023-07-07	2021-05-26	3.1	2.92	2.88	3.0	0.004	0.57	0.0	0.04	11.12	0.00	2.327	9.05	0.00	1.5	98.5	0.0	2.48	0.63	0.80	2.67	3.0	0.003	0.42	0.0	0.04	13.98	0.00	2.360	8.12	0.20	1.3	98.7	0.0	2.26	1.12	0.63	0.82	2.27	14546	1827	14	0	14	0	0	logfile
✔	8F4X	28858	2023-07-15	2022-11-11	3.01	3.72	3.03	3.4	0.004	0.55	0.0	0.03	15.82	0.00	2.226	5.99	0.00	0.6	99.4	0.0	0.06	0.84	0.83	1.71	3.4	0.002	0.42	0.0	0.03	17.34	0.00	2.299	5.10	0.12	0.1	99.9	0.0	5.43	0.45	0.84	0.85	0.51	32760	4020	60	0	0	0	0	logfile
✔	7RQZ	24641	2023-07-15	2021-08-08	3.32	3.07	—	3.3	0.011	0.96	0.0	0.06	17.06	0.00	2.073	6.78	0.00	4.8	95.2	0.0	0.73	0.59	0.73	1.63	3.3	0.003	0.43	0.0	0.03	16.24	0.00	2.110	5.21	0.18	3.9	96.1	0.0	1.15	0.29	0.60	0.76	1.52	32740	2128	8	0	20	0	15608	logfile
✔	7STM	25433	2023-07-12	2021-11-14	3.02	3.45	—	3.3	0.008	0.93	0.0	0.05	10.40	0.00	2.229	1.33	0.31	2.4	97.6	0.0	2.06	0.68	0.82	3.32	3.2	0.002	0.43	0.0	0.04	12.45	0.00	2.023	2.11	0.00	3.5	96.2	0.3	2.38	3.61	0.66	0.85	2.89	25040	1602	4	0	12	0	12100	logfile
✔	6PXM	20521	2023-07-15	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.43	0.0	0.03	17.64	0.00	2.214	4.08	0.03	1.8	98.2	0.0	5.31	1.48	0.79	0.90	3.81	32736	4080	24	0	0	0	0	logfile
✔	7PW4	13674	2023-07-09	2021-10-06	3.27	3.69	—	3.5	0.003	0.62	0.0	0.15	13.04	0.00	2.030	4.58	0.00	2.8	97.2	0.0	1.69	0.79	0.82	2.05	3.5	0.002	0.44	0.0	0.03	14.23	0.00	1.933	3.81	0.06	2.5	97.5	0.0	1.97	0.89	0.81	0.85	1.77	18965	2435	5	0	199	0	0	logfile
✔	7MGM	23829	2023-07-11	2021-04-12	3.1	3.35	3.11	3.0	0.004	0.55	0.0	0.04	14.02	0.00	1.874	5.80	0.04	2.4	97.6	0.0	0.78	0.87	0.89	2.62	3.0	0.002	0.44	0.0	0.04	14.91	0.00	1.983	5.55	0.07	1.9	98.1	0.0	1.60	0.21	0.87	0.90	2.28	24079	2964	4	0	6	0	0	logfile
✔	7oZU	13135	2023-07-04	2021-06-28	3.3	3.27	3.22	3.4	0.007	0.52	0.0	0.04	12.44	0.00	2.218	6.22	0.00	3.1	96.9	0.0	0.39	0.62	0.79	3.13	3.4	0.002	0.44	0.0	0.04	14.77	0.00	2.075	7.14	0.23	2.0	98.0	0.0	0.75	1.90	0.75	0.85	3.04	8408	991	6	22	2	0	0	logfile
✔	7LPC	23476	2023-07-07	2021-02-11	3.06	2.87	2.85	3.1	0.013	1.23	0.0	0.21	20.11	0.00	2.188	5.69	0.00	2.0	98.0	0.0	0.83	0.64	0.80	2.87	3.1	0.002	0.44	0.0	0.03	14.73	0.00	2.212	6.03	0.07	2.4	97.6	0.0	2.33	0.57	0.66	0.84	2.71	15256	1816	8	0	40	0	0	logfile
✔	7XNH	33315	2023-07-09	2022-04-28	3.1	2.98	2.73	2.9	0.006	1.12	0.0	0.05	13.57	0.01	2.144	6.68	0.61	0.6	99.4	0.0	-0.23	0.72	0.87	4.77	2.9	0.002	0.45	0.0	0.04	13.55	0.00	2.333	4.76	0.15	0.8	99.2	0.0	2.76	0.97	0.73	0.84	3.00	19224	2172	24	0	132	0	0	logfile
✔	7RQU	24636	2023-07-16	2021-08-08	3.05	3.32	—	3.3	0.012	1.15	0.0	0.06	17.86	0.00	2.334	3.79	0.00	3.2	96.8	0.0	1.69	0.63	0.76	2.73	3.3	0.003	0.45	0.0	0.03	15.71	0.00	2.351	3.30	0.42	3.7	96.3	0.0	1.99	0.26	0.64	0.80	2.66	35602	2416	8	0	38	0	16568	logfile
✔	8EL8	28224	2023-07-03	2022-09-23	3.2	3.53	3.33	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.003	0.45	0.0	0.04	15.16	0.00	2.353	2.27	0.00	2.4	97.6	0.0	1.11	0.26	0.67	0.85	2.07	4467	597	2	0	0	0	0	logfile

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