Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EoB	28333	2023-07-05	2022-10-02	3.1	3.53	3.19	3.4	0.005	0.61	0.0	0.04	11.24	0.00	1.945	7.00	1.78	2.6	97.4	0.0	0.42	0.76	0.84	3.12	3.4	0.002	0.46	0.0	0.04	13.80	0.00	2.018	6.55	0.00	2.3	97.7	0.0	0.85	0.55	0.75	0.83	2.59	10141	1245	4	0	4	0	0	logfile
✔	7JGG	22326	2023-07-03	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.47	0.0	0.03	12.80	0.00	1.958	77.81	0.00	4.3	95.7	0.0	1.53	1.24	0.66	0.69	—	4210	506	1	0	0	0	28	logfile
✔	8E4P	27895	2023-07-20	2022-08-18	3.59	4.02	3.50	3.9	0.004	0.75	0.0	0.05	13.14	0.00	2.242	7.79	0.00	3.0	97.0	0.0	2.88	0.65	0.74	1.40	3.8	0.003	0.47	0.0	0.03	13.81	0.00	2.116	8.42	0.16	3.2	96.8	0.0	2.77	0.46	0.66	0.76	1.18	51336	3596	8	0	12	0	24392	logfile
✔	7o6Q	12740	2023-07-04	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.70	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7Ji0	22341	2023-07-03	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.94	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.002	0.47	0.0	0.04	15.32	0.00	2.210	3.66	2.96	3.8	96.2	0.0	1.47	0.45	0.70	0.83	3.46	3556	432	4	0	0	0	0	logfile
✔	7RQW	24638	2023-07-15	2021-08-08	3.11	3.40	—	3.5	0.011	0.99	0.0	0.06	16.48	0.00	2.042	7.24	0.00	4.4	95.6	0.0	0.31	0.55	0.69	2.95	3.5	0.004	0.47	0.0	0.03	15.91	0.00	2.024	6.89	0.06	4.0	96.0	0.0	1.23	0.38	0.52	0.69	2.61	32984	2128	8	0	20	0	15804	logfile
✔	7SQV	25396	2023-07-03	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	8AP9	15562	2023-07-09	2022-08-09	3.7	3.41	3.21	3.4	0.006	0.48	0.0	0.04	9.61	0.00	2.191	2.85	0.40	1.9	98.1	0.0	-0.08	0.57	0.83	3.96	3.4	0.003	0.47	0.0	0.04	13.17	0.00	2.147	3.87	0.00	3.2	96.8	0.0	-1.39	1.39	0.63	0.86	3.40	19658	1285	14	0	1	0	9972	logfile
✔	8SiK	40508	2023-07-08	2023-04-16	2.9	3.14	2.92	3.2	0.003	0.51	0.0	0.04	15.67	0.00	2.206	6.55	0.96	1.7	98.3	0.0	2.43	0.56	0.79	4.00	3.2	0.002	0.47	0.0	0.04	16.00	0.00	2.245	6.49	1.51	2.2	97.8	0.0	2.72	0.22	0.64	0.84	3.66	15832	1984	12	0	8	0	0	logfile
✔	7MQi	23948	2023-07-11	2021-05-05	3.21	3.01	3.19	3.2	0.006	0.79	0.0	0.05	12.23	0.00	2.202	2.71	0.59	1.4	98.6	0.0	0.80	0.67	0.81	4.51	3.1	0.002	0.47	0.0	0.04	14.20	0.00	2.125	3.56	0.17	2.3	97.7	0.0	1.41	1.80	0.74	0.86	4.11	12696	1640	16	16	0	0	0	logfile
✔	7PDS	13342	2023-07-10	2021-08-06	3.14	2.94	3.06	3.1	0.005	0.68	0.0	0.05	14.79	0.00	1.818	8.20	0.25	4.3	95.7	0.0	-0.79	0.73	0.86	3.97	3.0	0.003	0.47	0.0	0.04	16.21	0.00	1.907	8.80	0.25	3.5	96.5	0.0	-0.41	0.91	0.75	0.88	3.75	22549	2714	13	5	10	0	0	logfile
✔	7K0M	22602	2023-07-09	2020-09-04	2.9	3.38	—	3.3	0.005	0.69	0.0	0.04	12.85	0.00	2.218	4.70	0.00	2.3	97.7	0.0	1.05	0.62	0.79	3.49	3.3	0.002	0.47	0.0	0.04	15.02	0.00	2.174	5.05	1.14	2.0	98.0	0.0	1.40	0.38	0.63	0.80	3.01	18578	2342	14	0	16	0	0	logfile
✔	7oZV	13138	2023-07-04	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.58	0.0	0.04	13.23	0.01	2.202	8.41	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.002	0.47	0.0	0.04	15.35	0.00	2.152	7.80	0.34	2.3	97.7	0.0	0.17	1.89	0.72	0.83	2.83	8409	991	6	22	2	0	0	logfile
✔	7o6P	12739	2023-07-04	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.002	0.47	0.0	0.04	13.52	0.00	2.251	5.96	0.00	2.0	98.0	0.0	2.22	0.39	0.90	0.92	5.36	8276	1022	8	0	0	268	0	logfile
✔	8DNY	27584	2023-07-03	2022-07-12	2.85	3.15	2.84	3.1	0.008	0.68	0.0	0.04	14.34	0.01	2.287	8.04	0.00	2.2	97.8	0.0	2.03	0.61	0.81	3.14	3.1	0.004	0.47	0.0	0.04	15.36	0.00	1.979	20.96	1.09	3.9	96.1	0.0	2.71	1.12	0.62	0.84	2.54	4336	558	4	0	1	0	5	logfile
✔	7YVQ	34136	2023-07-14	2022-08-19	3.18	3.50	3.32	3.3	0.004	0.58	0.0	0.04	14.17	0.00	2.131	6.40	0.75	6.2	93.8	0.0	-0.26	0.79	0.87	3.43	3.3	0.002	0.47	0.0	0.04	14.98	0.00	2.207	6.67	0.49	4.8	95.2	0.0	0.12	1.28	0.79	0.89	3.08	30742	3874	15	0	21	0	0	logfile
✔	7YQC	34023	2023-07-06	2022-08-06	2.82	2.99	2.80	3.0	0.013	1.86	24.0	0.13	16.60	0.01	2.497	5.68	9.34	1.3	98.7	0.0	3.07	0.65	0.81	2.22	3.0	0.003	0.47	0.0	0.04	17.63	0.00	2.311	5.90	4.17	1.5	98.5	0.0	3.64	0.50	0.65	0.82	2.02	11396	1386	7	0	0	0	0	logfile
✔	7FGi	31582	2023-07-18	2021-07-27	2.51	2.92	—	2.7	0.012	0.87	0.0	0.05	16.62	0.00	1.814	1.37	2.16	3.0	97.0	0.0	-0.36	0.77	0.79	3.39	2.7	0.002	0.47	0.0	0.04	16.59	0.00	2.181	1.56	1.17	1.3	98.7	0.0	0.72	0.33	0.85	0.91	3.64	42288	5256	24	24	36	0	0	logfile
✔	8A05	15048	2023-07-03	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.003	0.47	0.0	0.05	14.61	0.00	2.266	4.03	0.00	2.2	97.8	0.0	0.40	1.25	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	7o6E	12738	2023-07-16	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.14	0.00	2.203	3.42	0.38	0.7	99.3	0.0	4.41	0.27	0.88	0.90	5.26	35304	4248	48	0	0	1392	0	logfile

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