Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oZV	13138	2023-02-18	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.58	0.0	0.04	13.23	0.01	2.202	8.41	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.002	0.47	0.0	0.04	15.35	0.00	2.152	7.74	0.34	2.3	97.7	0.0	0.17	1.89	0.72	0.83	2.83	8409	991	6	22	2	0	0	logfile
✔	7PDS	13342	2023-02-24	2021-08-06	3.14	2.94	3.06	3.1	0.005	0.68	0.0	0.05	14.79	0.00	1.818	8.20	0.25	4.3	95.7	0.0	-0.79	0.73	0.86	3.97	3.0	0.003	0.47	0.0	0.04	16.21	0.00	1.907	8.80	0.25	3.5	96.5	0.0	-0.41	0.91	0.75	0.88	3.75	22549	2714	13	5	10	0	0	logfile
✔	6U6i	20666	2023-02-28	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	6.12	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.003	0.47	0.0	0.04	13.04	0.00	2.092	5.94	0.09	5.0	95.0	0.0	-0.18	0.51	0.81	0.83	4.16	21701	1496	9	0	11	0	10337	logfile
✔	8AP9	15562	2023-02-23	2022-08-09	3.7	3.41	3.21	3.4	0.006	0.48	0.0	0.04	9.61	0.00	2.191	2.85	0.40	1.9	98.1	0.0	-0.08	0.57	0.83	3.96	3.4	0.003	0.47	0.0	0.04	13.17	0.00	2.147	3.87	0.00	3.2	96.8	0.0	-1.39	1.39	0.63	0.86	3.40	19658	1285	14	0	1	0	9972	logfile
✔	7o6Q	12740	2023-02-18	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.72	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7K0M	22602	2023-02-22	2020-09-04	2.9	3.38	—	3.3	0.005	0.69	0.0	0.04	12.85	0.00	2.218	4.70	0.00	2.3	97.7	0.0	1.05	0.62	0.79	3.49	3.3	0.002	0.47	0.0	0.04	15.02	0.00	2.174	5.05	1.14	2.0	98.0	0.0	1.40	0.38	0.63	0.80	3.01	18578	2342	14	0	16	0	0	logfile
✔	7MQi	23948	2023-02-24	2021-05-05	3.21	3.01	3.19	3.2	0.006	0.79	0.0	0.05	12.23	0.00	2.202	2.71	0.59	1.4	98.6	0.0	0.80	0.67	0.81	4.51	3.1	0.002	0.47	0.0	0.04	14.20	0.00	2.125	3.56	0.17	2.3	97.7	0.0	1.41	1.80	0.74	0.86	4.11	12696	1640	16	16	0	0	0	logfile
✔	7Ji0	22341	2023-02-17	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.94	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.002	0.47	0.0	0.04	15.32	0.00	2.210	3.66	2.96	3.8	96.2	0.0	1.47	0.45	0.70	0.83	3.46	3556	432	4	0	0	0	0	logfile
✔	7TC8	25805	2023-02-23	2021-12-23	2.4	2.46	—	2.5	0.008	0.68	0.0	0.05	17.52	0.00	1.659	12.47	3.31	2.3	97.7	0.0	0.38	0.74	0.86	5.19	2.5	0.003	0.47	0.0	0.04	17.56	0.00	1.800	15.85	2.86	2.2	97.8	0.0	1.50	0.26	0.74	0.87	5.15	20567	2113	8	0	4	0	3200	logfile
✔	7SQV	25396	2023-02-17	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	7RH9	24458	2023-02-21	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.79	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.002	0.48	0.0	0.04	15.63	0.00	2.149	8.70	0.81	1.2	98.8	0.0	2.64	0.90	0.63	0.86	4.00	14680	1792	4	0	0	0	0	logfile
✔	7LFX	23308	2023-02-21	2021-01-19	3.1	2.80	—	3.0	0.012	0.64	0.0	0.05	13.11	0.00	2.226	9.82	0.25	2.3	97.7	0.0	-1.18	0.64	0.81	2.40	3.0	0.002	0.48	0.0	0.04	15.75	0.00	2.269	13.28	0.31	3.3	96.7	0.0	1.06	0.81	0.65	0.85	2.46	14846	1800	8	0	6	0	0	logfile
✔	7STL	25432	2023-02-25	2021-11-14	2.95	3.30	—	3.2	0.004	0.75	0.0	0.04	10.31	0.00	2.190	0.38	0.15	2.3	97.7	0.0	1.82	0.67	0.82	3.24	3.2	0.004	0.48	0.0	0.04	13.91	0.00	2.104	2.76	0.59	3.5	96.3	0.1	1.65	0.57	0.66	0.84	3.21	25668	1600	4	0	8	0	12568	logfile
✔	7LFT	23306	2023-02-22	2021-01-18	2.6	2.42	—	2.6	0.009	1.10	0.0	0.06	14.80	0.00	1.832	8.78	0.25	2.5	97.5	0.0	-0.82	0.69	0.87	4.43	2.5	0.002	0.48	0.0	0.04	16.03	0.00	2.231	8.37	1.60	2.0	98.0	0.0	1.69	0.56	0.71	0.88	4.26	15479	1800	12	0	35	4	0	logfile
✔	7NKQ	12446	2023-02-19	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.003	0.48	0.0	0.04	15.71	0.00	2.008	6.87	1.05	2.3	97.7	0.0	2.27	0.33	0.82	0.84	2.51	10621	714	8	0	0	0	5312	logfile
✔	7RHi	24462	2023-02-21	2021-07-17	3.31	3.09	—	3.2	0.012	0.71	0.0	0.05	13.67	0.00	2.230	6.80	0.00	3.1	96.9	0.0	-0.39	0.68	0.83	1.85	3.2	0.002	0.48	0.0	0.04	14.97	0.00	2.238	11.27	0.25	2.9	97.1	0.0	1.39	0.89	0.70	0.87	1.92	14717	1784	8	0	4	0	0	logfile
✔	6MRW	9214	2023-02-23	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.78	0.00	2.084	7.07	0.00	1.9	98.1	0.0	6.00	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	7Z0Z	14435	2023-02-22	2022-02-24	2.68	2.92	2.79	2.8	0.006	0.72	6.0	0.05	14.67	0.00	2.092	7.37	0.54	1.9	98.0	0.2	0.45	0.74	0.86	4.83	2.8	0.003	0.48	0.0	0.04	16.57	0.00	2.174	5.16	1.06	2.0	97.8	0.2	1.32	0.44	0.78	0.90	4.34	29466	3510	6	0	0	0	0	logfile
✔	7RHH	24461	2023-02-21	2021-07-17	3.31	3.03	—	3.0	0.012	0.65	0.0	0.05	13.02	0.00	2.231	5.58	0.06	2.2	97.8	0.0	0.69	0.68	0.84	2.48	3.0	0.002	0.48	0.0	0.04	14.33	0.00	2.191	9.27	0.06	2.1	97.9	0.0	1.55	0.38	0.69	0.87	2.40	14717	1784	8	0	4	0	0	logfile
✔	7MQF	23945	2023-02-24	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.43	0.00	2.255	2.60	0.00	1.0	99.0	0.0	1.00	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile

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