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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EoB | 28333 | 2023-07-05 | 2022-10-02 | 3.1 | 3.53 | 3.19 | 3.4 | 0.005 | 0.61 | 0.0 | 0.04 | 11.24 | 0.00 | 1.945 | 7.00 | 1.78 | 2.6 | 97.4 | 0.0 | 0.42 | 0.76 | 0.84 | 3.12 | 3.4 | 0.002 | 0.46 | 0.0 | 0.04 | 13.80 | 0.00 | 2.018 | 6.55 | 0.00 | 2.3 | 97.7 | 0.0 | 0.85 | 0.55 | 0.75 | 0.83 | 2.59 | 10141 | 1245 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7JGG | 22326 | 2023-07-03 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.5 | 0.002 | 0.47 | 0.0 | 0.03 | 12.80 | 0.00 | 1.958 | 77.81 | 0.00 | 4.3 | 95.7 | 0.0 | 1.53 | 1.24 | 0.66 | 0.69 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✔ | 8E4P | 27895 | 2023-07-20 | 2022-08-18 | 3.59 | 4.02 | 3.50 | 3.9 | 0.004 | 0.75 | 0.0 | 0.05 | 13.14 | 0.00 | 2.242 | 7.79 | 0.00 | 3.0 | 97.0 | 0.0 | 2.88 | 0.65 | 0.74 | 1.40 | 3.8 | 0.003 | 0.47 | 0.0 | 0.03 | 13.81 | 0.00 | 2.116 | 8.42 | 0.16 | 3.2 | 96.8 | 0.0 | 2.77 | 0.46 | 0.66 | 0.76 | 1.18 | 51336 | 3596 | 8 | 0 | 12 | 0 | 24392 | logfile |
✔ | 7o6Q | 12740 | 2023-07-04 | 2021-04-12 | 1.88 | 2.21 | — | 1.9 | 0.010 | 0.71 | 0.0 | 0.05 | 12.80 | 0.01 | 2.115 | 4.83 | 1.25 | 3.2 | 96.8 | 0.0 | -1.61 | 0.88 | 0.85 | 7.59 | 1.9 | 0.002 | 0.47 | 0.0 | 0.04 | 14.51 | 0.00 | 2.189 | 4.70 | 1.63 | 0.8 | 99.2 | 0.0 | 3.42 | 0.36 | 0.90 | 0.90 | 6.06 | 7999 | 997 | 8 | 0 | 0 | 399 | 0 | logfile |
✔ | 7Ji0 | 22341 | 2023-07-03 | 2020-07-21 | 2.95 | 3.30 | 3.08 | 3.2 | 0.003 | 0.48 | 0.0 | 0.04 | 12.97 | 0.00 | 2.233 | 3.94 | 5.91 | 4.5 | 95.5 | 0.0 | -3.04 | 0.73 | 0.84 | 4.32 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 15.32 | 0.00 | 2.210 | 3.66 | 2.96 | 3.8 | 96.2 | 0.0 | 1.47 | 0.45 | 0.70 | 0.83 | 3.46 | 3556 | 432 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RQW | 24638 | 2023-07-15 | 2021-08-08 | 3.11 | 3.40 | — | 3.5 | 0.011 | 0.99 | 0.0 | 0.06 | 16.48 | 0.00 | 2.042 | 7.24 | 0.00 | 4.4 | 95.6 | 0.0 | 0.31 | 0.55 | 0.69 | 2.95 | 3.5 | 0.004 | 0.47 | 0.0 | 0.03 | 15.91 | 0.00 | 2.024 | 6.89 | 0.06 | 4.0 | 96.0 | 0.0 | 1.23 | 0.38 | 0.52 | 0.69 | 2.61 | 32984 | 2128 | 8 | 0 | 20 | 0 | 15804 | logfile |
✔ | 7SQV | 25396 | 2023-07-03 | 2021-11-06 | 2.3 | 2.95 | 2.29 | 2.8 | 0.001 | 0.38 | 0.0 | 0.04 | 16.08 | 0.00 | 2.314 | 1.47 | 0.63 | 0.7 | 99.3 | 0.0 | 1.86 | 0.76 | 0.88 | 3.59 | 2.8 | 0.003 | 0.47 | 0.0 | 0.04 | 16.30 | 0.00 | 2.295 | 1.36 | 1.67 | 1.1 | 98.9 | 0.0 | 1.71 | 1.99 | 0.77 | 0.90 | 3.84 | 4471 | 573 | 5 | 0 | 0 | 7 | 0 | logfile |
✔ | 8AP9 | 15562 | 2023-07-09 | 2022-08-09 | 3.7 | 3.41 | 3.21 | 3.4 | 0.006 | 0.48 | 0.0 | 0.04 | 9.61 | 0.00 | 2.191 | 2.85 | 0.40 | 1.9 | 98.1 | 0.0 | -0.08 | 0.57 | 0.83 | 3.96 | 3.4 | 0.003 | 0.47 | 0.0 | 0.04 | 13.17 | 0.00 | 2.147 | 3.87 | 0.00 | 3.2 | 96.8 | 0.0 | -1.39 | 1.39 | 0.63 | 0.86 | 3.40 | 19658 | 1285 | 14 | 0 | 1 | 0 | 9972 | logfile |
✔ | 8SiK | 40508 | 2023-07-08 | 2023-04-16 | 2.9 | 3.14 | 2.92 | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 15.67 | 0.00 | 2.206 | 6.55 | 0.96 | 1.7 | 98.3 | 0.0 | 2.43 | 0.56 | 0.79 | 4.00 | 3.2 | 0.002 | 0.47 | 0.0 | 0.04 | 16.00 | 0.00 | 2.245 | 6.49 | 1.51 | 2.2 | 97.8 | 0.0 | 2.72 | 0.22 | 0.64 | 0.84 | 3.66 | 15832 | 1984 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 7MQi | 23948 | 2023-07-11 | 2021-05-05 | 3.21 | 3.01 | 3.19 | 3.2 | 0.006 | 0.79 | 0.0 | 0.05 | 12.23 | 0.00 | 2.202 | 2.71 | 0.59 | 1.4 | 98.6 | 0.0 | 0.80 | 0.67 | 0.81 | 4.51 | 3.1 | 0.002 | 0.47 | 0.0 | 0.04 | 14.20 | 0.00 | 2.125 | 3.56 | 0.17 | 2.3 | 97.7 | 0.0 | 1.41 | 1.80 | 0.74 | 0.86 | 4.11 | 12696 | 1640 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 7PDS | 13342 | 2023-07-10 | 2021-08-06 | 3.14 | 2.94 | 3.06 | 3.1 | 0.005 | 0.68 | 0.0 | 0.05 | 14.79 | 0.00 | 1.818 | 8.20 | 0.25 | 4.3 | 95.7 | 0.0 | -0.79 | 0.73 | 0.86 | 3.97 | 3.0 | 0.003 | 0.47 | 0.0 | 0.04 | 16.21 | 0.00 | 1.907 | 8.80 | 0.25 | 3.5 | 96.5 | 0.0 | -0.41 | 0.91 | 0.75 | 0.88 | 3.75 | 22549 | 2714 | 13 | 5 | 10 | 0 | 0 | logfile |
✔ | 7K0M | 22602 | 2023-07-09 | 2020-09-04 | 2.9 | 3.38 | — | 3.3 | 0.005 | 0.69 | 0.0 | 0.04 | 12.85 | 0.00 | 2.218 | 4.70 | 0.00 | 2.3 | 97.7 | 0.0 | 1.05 | 0.62 | 0.79 | 3.49 | 3.3 | 0.002 | 0.47 | 0.0 | 0.04 | 15.02 | 0.00 | 2.174 | 5.05 | 1.14 | 2.0 | 98.0 | 0.0 | 1.40 | 0.38 | 0.63 | 0.80 | 3.01 | 18578 | 2342 | 14 | 0 | 16 | 0 | 0 | logfile |
✔ | 7oZV | 13138 | 2023-07-04 | 2021-06-28 | 3.2 | 3.08 | 3.16 | 3.3 | 0.007 | 0.58 | 0.0 | 0.04 | 13.23 | 0.01 | 2.202 | 8.41 | 0.00 | 2.6 | 97.4 | 0.0 | -0.22 | 0.64 | 0.79 | 3.09 | 3.3 | 0.002 | 0.47 | 0.0 | 0.04 | 15.35 | 0.00 | 2.152 | 7.80 | 0.34 | 2.3 | 97.7 | 0.0 | 0.17 | 1.89 | 0.72 | 0.83 | 2.83 | 8409 | 991 | 6 | 22 | 2 | 0 | 0 | logfile |
✔ | 7o6P | 12739 | 2023-07-04 | 2021-04-12 | 2.04 | 2.55 | — | 2.1 | 0.008 | 0.59 | 0.0 | 0.05 | 11.73 | 0.00 | 2.140 | 6.08 | 0.93 | 1.8 | 98.2 | 0.0 | -0.54 | 0.90 | 0.88 | 5.90 | 2.1 | 0.002 | 0.47 | 0.0 | 0.04 | 13.52 | 0.00 | 2.251 | 5.96 | 0.00 | 2.0 | 98.0 | 0.0 | 2.22 | 0.39 | 0.90 | 0.92 | 5.36 | 8276 | 1022 | 8 | 0 | 0 | 268 | 0 | logfile |
✔ | 8DNY | 27584 | 2023-07-03 | 2022-07-12 | 2.85 | 3.15 | 2.84 | 3.1 | 0.008 | 0.68 | 0.0 | 0.04 | 14.34 | 0.01 | 2.287 | 8.04 | 0.00 | 2.2 | 97.8 | 0.0 | 2.03 | 0.61 | 0.81 | 3.14 | 3.1 | 0.004 | 0.47 | 0.0 | 0.04 | 15.36 | 0.00 | 1.979 | 20.96 | 1.09 | 3.9 | 96.1 | 0.0 | 2.71 | 1.12 | 0.62 | 0.84 | 2.54 | 4336 | 558 | 4 | 0 | 1 | 0 | 5 | logfile |
✔ | 7YVQ | 34136 | 2023-07-14 | 2022-08-19 | 3.18 | 3.50 | 3.32 | 3.3 | 0.004 | 0.58 | 0.0 | 0.04 | 14.17 | 0.00 | 2.131 | 6.40 | 0.75 | 6.2 | 93.8 | 0.0 | -0.26 | 0.79 | 0.87 | 3.43 | 3.3 | 0.002 | 0.47 | 0.0 | 0.04 | 14.98 | 0.00 | 2.207 | 6.67 | 0.49 | 4.8 | 95.2 | 0.0 | 0.12 | 1.28 | 0.79 | 0.89 | 3.08 | 30742 | 3874 | 15 | 0 | 21 | 0 | 0 | logfile |
✔ | 7YQC | 34023 | 2023-07-06 | 2022-08-06 | 2.82 | 2.99 | 2.80 | 3.0 | 0.013 | 1.86 | 24.0 | 0.13 | 16.60 | 0.01 | 2.497 | 5.68 | 9.34 | 1.3 | 98.7 | 0.0 | 3.07 | 0.65 | 0.81 | 2.22 | 3.0 | 0.003 | 0.47 | 0.0 | 0.04 | 17.63 | 0.00 | 2.311 | 5.90 | 4.17 | 1.5 | 98.5 | 0.0 | 3.64 | 0.50 | 0.65 | 0.82 | 2.02 | 11396 | 1386 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FGi | 31582 | 2023-07-18 | 2021-07-27 | 2.51 | 2.92 | — | 2.7 | 0.012 | 0.87 | 0.0 | 0.05 | 16.62 | 0.00 | 1.814 | 1.37 | 2.16 | 3.0 | 97.0 | 0.0 | -0.36 | 0.77 | 0.79 | 3.39 | 2.7 | 0.002 | 0.47 | 0.0 | 0.04 | 16.59 | 0.00 | 2.181 | 1.56 | 1.17 | 1.3 | 98.7 | 0.0 | 0.72 | 0.33 | 0.85 | 0.91 | 3.64 | 42288 | 5256 | 24 | 24 | 36 | 0 | 0 | logfile |
✔ | 8A05 | 15048 | 2023-07-03 | 2022-05-26 | 3.4 | 3.47 | 3.11 | 3.5 | 0.002 | 0.43 | 0.0 | 0.05 | 12.67 | 0.00 | 2.328 | 2.02 | 0.00 | 2.2 | 97.8 | 0.0 | 0.42 | 0.37 | 0.84 | 2.71 | 3.5 | 0.003 | 0.47 | 0.0 | 0.05 | 14.61 | 0.00 | 2.266 | 4.03 | 0.00 | 2.2 | 97.8 | 0.0 | 0.40 | 1.25 | 0.36 | 0.85 | 2.71 | 764 | 91 | 2 | 0 | 5 | 0 | 0 | logfile |
✔ | 7o6E | 12738 | 2023-07-16 | 2021-04-10 | 2.1 | 1.78 | 2.15 | 1.6 | 0.017 | 1.10 | 0.0 | 0.07 | 18.13 | 0.01 | 2.110 | 3.49 | 0.00 | 2.3 | 97.7 | 0.0 | 2.10 | 0.87 | 0.88 | 6.02 | 1.6 | 0.003 | 0.47 | 0.0 | 0.03 | 18.14 | 0.00 | 2.203 | 3.42 | 0.38 | 0.7 | 99.3 | 0.0 | 4.41 | 0.27 | 0.88 | 0.90 | 5.26 | 35304 | 4248 | 48 | 0 | 0 | 1392 | 0 | logfile |