Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A0E	15052	2023-11-15	2022-05-27	2.8	3.09	2.92	3.0	0.003	0.60	0.0	0.04	13.10	0.00	2.176	2.58	0.00	1.7	98.3	0.0	-0.22	0.76	0.89	4.52	3.0	0.002	0.48	0.0	0.04	15.33	0.00	2.194	2.70	0.55	1.5	98.5	0.0	0.08	0.31	0.74	0.90	3.82	12082	1526	9	0	7	0	0	logfile
✔	7XKQ	33264	2023-11-19	2022-04-20	3.3	3.61	3.27	3.3	0.003	0.50	0.0	0.04	13.48	0.00	1.967	4.96	0.00	2.0	98.0	0.0	1.22	0.86	0.89	2.81	3.3	0.002	0.48	0.0	0.04	14.84	0.00	1.983	6.06	0.11	2.2	97.8	0.0	1.46	0.40	0.87	0.91	2.38	25299	3259	15	0	13	0	0	logfile
✔	8F7B	28901	2023-11-16	2022-11-18	3.15	3.53	3.17	3.5	0.005	0.79	0.0	0.04	17.29	0.00	2.263	5.78	0.23	2.4	97.6	0.0	1.06	0.63	0.79	2.19	3.5	0.002	0.48	0.0	0.04	16.28	0.00	2.227	7.36	0.34	2.1	97.9	0.0	2.15	1.13	0.59	0.79	2.11	16166	1894	18	0	17	6	0	logfile
✔	7STL	25432	2023-11-19	2021-11-14	2.95	3.30	—	3.2	0.004	0.75	0.0	0.04	10.31	0.00	2.190	0.38	0.15	2.3	97.7	0.0	1.82	0.67	0.82	3.24	3.2	0.004	0.48	0.0	0.04	13.91	0.00	2.104	2.76	0.59	3.5	96.3	0.1	1.65	0.57	0.66	0.84	3.21	25668	1600	4	0	8	0	12568	logfile
✔	7RH9	24458	2023-11-16	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.79	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.002	0.48	0.0	0.04	15.63	0.00	2.149	8.70	0.81	1.2	98.8	0.0	2.64	0.90	0.63	0.86	4.00	14680	1792	4	0	0	0	0	logfile
✔	7USW	26741	2023-11-16	2022-04-26	3.1	3.48	3.14	3.5	0.004	0.78	0.0	0.04	15.91	0.01	2.254	7.09	0.21	3.1	96.9	0.0	2.17	0.63	0.80	2.13	3.5	0.002	0.48	0.0	0.04	16.01	0.00	2.249	5.38	0.35	3.2	96.8	0.0	2.29	0.27	0.63	0.82	2.11	14322	1676	12	0	68	0	0	logfile
✔	7ZXo	15012	2023-11-16	2022-05-21	2.5	2.89	2.54	2.7	0.003	0.52	0.0	0.04	15.39	0.01	2.216	2.71	1.36	0.0	100.0	0.0	4.19	0.72	0.88	3.47	2.7	0.003	0.48	0.0	0.04	15.90	0.00	2.186	3.88	1.73	0.6	99.4	0.0	4.29	0.62	0.65	0.92	3.20	17016	2124	12	0	0	0	0	logfile
✔	7ZDQ	14666	2023-11-13	2022-03-29	3.2	2.77	3.10	2.9	0.003	0.56	0.0	0.04	15.22	0.00	2.212	6.47	0.15	2.3	97.7	0.0	1.48	0.71	0.81	3.08	3.1	0.002	0.48	0.0	0.04	16.22	0.00	2.230	5.65	0.15	2.5	97.5	0.0	1.61	0.27	0.71	0.83	3.05	6264	763	3	0	3	0	0	logfile
✔	7XKi	33254	2023-11-21	2022-04-19	3.4	3.86	3.39	3.8	0.002	0.41	0.0	0.04	13.46	0.00	2.299	1.34	0.00	2.5	97.5	0.0	5.17	0.60	0.76	2.60	3.8	0.003	0.48	0.0	0.04	14.62	0.00	2.187	4.18	0.06	2.8	97.2	0.0	4.42	1.10	0.54	0.76	2.54	32280	1992	24	0	48	0	15996	logfile
✔	8BQ2	16170	2023-11-18	2022-11-18	3.8	3.92	3.66	3.8	0.003	0.54	0.0	0.04	13.61	0.01	2.219	7.91	0.00	2.0	98.0	0.0	-0.37	0.77	0.86	2.55	3.8	0.002	0.48	0.0	0.04	14.63	0.00	2.215	6.08	0.04	1.4	98.6	0.0	-0.40	0.62	0.78	0.88	2.35	22331	2790	19	30	27	0	0	logfile
✔	6VRS	21371	2023-11-15	2020-02-09	2.7	3.22	—	2.9	0.008	1.49	5.0	0.11	14.48	0.01	2.012	2.39	1.82	3.1	96.6	0.3	-0.31	0.95	0.92	6.32	2.9	0.003	0.48	0.0	0.04	15.07	0.00	2.075	6.00	0.17	2.3	97.7	0.0	2.16	1.01	0.94	0.90	4.30	12208	1548	12	0	8	16	0	logfile
✔	8BVQ	16268	2023-11-19	2022-12-05	3.3	3.33	3.29	3.5	0.004	0.55	0.0	0.04	16.05	0.00	2.088	7.55	0.31	4.1	95.9	0.0	-0.42	0.54	0.73	1.75	3.5	0.002	0.48	0.0	0.04	16.24	0.00	2.051	7.03	0.39	5.0	95.0	0.0	-0.40	0.28	0.60	0.81	1.87	23125	1518	6	0	0	0	11250	logfile
✔	8HH8	34755	2023-11-18	2022-11-16	2.8	3.21	2.83	3.0	0.003	0.56	0.0	0.04	13.49	0.00	1.983	3.76	0.08	2.2	97.8	0.0	1.14	0.84	0.90	3.75	3.0	0.002	0.48	0.0	0.04	15.01	0.00	1.990	4.56	0.70	2.4	97.6	0.0	1.46	0.37	0.85	0.92	3.19	24250	3129	13	0	12	0	0	logfile
✔	7XTZ	33453	2023-11-13	2022-05-18	2.8	2.99	2.73	2.9	0.012	0.90	0.0	0.05	13.57	0.00	2.204	0.77	0.42	3.2	96.8	0.0	-0.29	0.83	0.84	4.09	2.9	0.002	0.48	0.0	0.04	14.33	0.00	2.060	2.70	0.70	3.1	96.9	0.0	0.02	0.30	0.83	0.86	3.72	51900	3291	21	0	75	0	25032	logfile
✔	7LFX	23308	2023-11-16	2021-01-19	3.1	2.80	—	3.0	0.012	0.64	0.0	0.05	13.11	0.00	2.226	9.82	0.25	2.3	97.7	0.0	-1.18	0.64	0.81	2.40	3.0	0.002	0.48	0.0	0.04	15.57	0.00	2.260	12.37	0.37	2.6	97.4	0.0	1.12	0.78	0.65	0.85	2.38	14846	1800	8	0	6	0	0	logfile
✔	7XDG	33147	2023-11-17	2022-03-27	2.84	3.51	2.99	3.4	0.014	0.91	0.0	0.05	11.97	0.00	2.160	12.16	0.00	1.5	98.5	0.0	0.40	0.73	0.82	3.75	3.4	0.003	0.48	0.0	0.04	14.39	0.00	2.196	10.83	1.07	1.4	98.6	0.0	0.70	2.48	0.71	0.82	3.28	17836	2204	8	0	12	0	0	logfile
✔	7K0Q	22608	2023-11-14	2020-09-04	3.3	3.61	—	3.5	0.006	0.70	0.0	0.05	12.64	0.00	2.116	5.18	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.48	0.0	0.04	14.21	0.00	2.189	4.84	0.11	2.5	97.5	0.0	1.24	1.46	0.73	0.87	2.87	8778	1107	5	0	2	0	0	logfile
✔	7LFT	23306	2023-11-16	2021-01-18	2.6	2.42	—	2.6	0.009	1.10	0.0	0.06	14.80	0.00	1.832	8.78	0.25	2.5	97.5	0.0	-0.82	0.69	0.87	4.43	2.5	0.002	0.48	0.0	0.04	16.03	0.00	2.231	8.37	1.60	2.0	98.0	0.0	1.69	0.56	0.71	0.88	4.26	15479	1800	12	0	35	4	0	logfile
✔	7ZH4	14721	2023-11-13	2022-04-05	2.49	2.65	2.46	2.6	0.005	0.88	0.0	0.04	14.07	0.00	2.231	4.63	0.00	2.3	97.7	0.0	-0.97	0.56	0.86	4.93	2.6	0.002	0.48	0.0	0.04	16.92	0.00	2.240	5.14	1.51	1.4	98.6	0.0	1.08	2.14	0.52	0.85	3.74	2957	362	4	0	2	39	0	logfile
✔	7SK9	25177	2023-11-15	2021-10-19	3.7	4.01	—	3.9	0.005	0.62	0.0	0.05	13.87	0.00	2.028	4.76	0.00	4.4	95.6	0.0	1.15	0.71	0.81	1.92	3.9	0.002	0.48	0.0	0.04	14.54	0.00	2.052	5.47	0.00	2.5	97.5	0.0	1.38	0.42	0.70	0.81	2.01	11261	716	4	0	3	0	5561	logfile

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