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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6MRT | 9212 | 2023-04-19 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.49 | 0.0 | 0.03 | 15.38 | 0.00 | 2.211 | 3.09 | 1.33 | 0.6 | 99.4 | 0.0 | 5.41 | 3.08 | 0.73 | 0.87 | 2.47 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DBL | 27289 | 2023-04-23 | 2022-06-14 | 2.4 | 2.55 | 2.52 | 2.5 | 0.011 | 0.82 | 0.0 | 0.06 | 16.47 | 0.00 | 1.885 | 7.60 | 2.67 | 3.3 | 96.7 | 0.0 | 0.14 | 0.67 | 0.83 | 4.21 | 2.5 | 0.002 | 0.49 | 0.0 | 0.05 | 16.31 | 0.00 | 1.978 | 8.76 | 2.74 | 2.1 | 97.9 | 0.0 | 0.82 | 0.41 | 0.66 | 0.85 | 3.91 | 14358 | 1854 | 18 | 0 | 24 | 12 | 0 | logfile |
✔ | 7SFK | 25091 | 2023-04-20 | 2021-10-04 | 2.74 | 2.96 | — | 3.1 | 0.008 | 0.97 | 0.0 | 0.04 | 18.02 | 0.01 | 2.265 | 3.61 | 0.43 | 1.8 | 98.2 | 0.0 | 2.37 | 0.74 | 0.84 | 3.90 | 3.0 | 0.003 | 0.49 | 0.0 | 0.04 | 17.19 | 0.01 | 2.160 | 5.04 | 0.43 | 2.4 | 97.6 | 0.0 | 1.08 | 0.34 | 0.67 | 0.83 | 4.06 | 7419 | 852 | 9 | 0 | 24 | 57 | 0 | logfile |
✔ | 6DWB | 8924 | 2023-04-24 | 2018-06-26 | 3.3 | 3.43 | — | 3.4 | 0.007 | 0.66 | 0.0 | 0.04 | 7.21 | 0.01 | 2.161 | 2.34 | 0.00 | 5.1 | 94.9 | 0.0 | -6.22 | 0.61 | 0.75 | 2.51 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 13.59 | 0.00 | 2.142 | 4.35 | 0.10 | 3.6 | 96.4 | 0.0 | 4.58 | 1.15 | 0.75 | 0.90 | 2.83 | 18360 | 2340 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ASD | 15614 | 2023-04-23 | 2022-08-19 | 2.6 | 2.22 | 2.62 | 2.4 | 0.006 | 0.65 | 0.0 | 0.04 | 13.76 | 0.01 | 2.030 | 3.99 | 0.06 | 3.6 | 96.4 | 0.0 | -0.27 | 0.64 | 0.84 | 4.06 | 2.4 | 0.002 | 0.49 | 0.0 | 0.04 | 16.15 | 0.00 | 2.002 | 6.02 | 0.68 | 3.4 | 96.6 | 0.0 | 0.69 | 0.31 | 0.65 | 0.86 | 3.69 | 15531 | 1826 | 9 | 44 | 4 | 32 | 0 | logfile |
✔ | 6ZBC | 11150 | 2023-04-25 | 2020-06-08 | 3.1 | 3.91 | 3.31 | 3.6 | 0.007 | 1.02 | 0.0 | 0.05 | 13.80 | 0.00 | 2.449 | 1.08 | 0.00 | 1.3 | 98.7 | 0.0 | -0.79 | 0.85 | 0.80 | 2.24 | 3.6 | 0.002 | 0.49 | 0.0 | 0.03 | 15.14 | 0.00 | 2.071 | 3.69 | 0.18 | 1.4 | 98.6 | 0.0 | 4.05 | 0.84 | 0.85 | 0.81 | 1.66 | 19534 | 1160 | 4 | 0 | 0 | 0 | 9902 | logfile |
✔ | 7RHG | 24460 | 2023-04-23 | 2021-07-17 | 2.88 | 2.68 | — | 2.7 | 0.003 | 0.57 | 0.0 | 0.04 | 15.36 | 0.00 | 2.196 | 5.80 | 0.00 | 1.7 | 98.3 | 0.0 | 0.74 | 0.69 | 0.87 | 3.86 | 2.8 | 0.003 | 0.49 | 0.0 | 0.04 | 17.08 | 0.00 | 2.130 | 7.79 | 0.93 | 1.5 | 98.5 | 0.0 | 2.09 | 0.33 | 0.69 | 0.89 | 3.75 | 14753 | 1790 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6YE4 | 10789 | 2023-04-21 | 2020-03-24 | 3.2 | 3.33 | 3.07 | 3.3 | 0.026 | 1.69 | 0.0 | 0.10 | 14.61 | 0.01 | 2.373 | 3.02 | 0.00 | 0.9 | 99.1 | 0.0 | -3.36 | 0.73 | 0.88 | 2.50 | 3.3 | 0.003 | 0.49 | 0.0 | 0.03 | 16.29 | 0.00 | 2.376 | 4.96 | 0.00 | 2.4 | 97.6 | 0.0 | 3.87 | 0.94 | 0.65 | 0.85 | 1.22 | 9140 | 1180 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 7STN | 25434 | 2023-04-27 | 2021-11-14 | 3.19 | 3.43 | — | 3.4 | 0.008 | 0.75 | 0.0 | 0.04 | 9.95 | 0.00 | 2.366 | 1.05 | 0.15 | 2.2 | 97.8 | 0.0 | 2.30 | 0.66 | 0.80 | 3.21 | 3.4 | 0.004 | 0.49 | 0.0 | 0.04 | 12.77 | 0.00 | 2.129 | 3.31 | 0.00 | 4.2 | 95.8 | 0.0 | 1.91 | 1.29 | 0.64 | 0.82 | 2.88 | 25188 | 1580 | 4 | 0 | 10 | 0 | 12256 | logfile |
✔ | 7oo0 | 13003 | 2023-04-23 | 2021-05-26 | 3.1 | 3.05 | 2.96 | 3.1 | 0.009 | 0.86 | 0.0 | 0.05 | 12.75 | 0.00 | 2.131 | 7.27 | 0.00 | 3.1 | 96.9 | 0.0 | -1.80 | 0.61 | 0.78 | 2.85 | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 13.55 | 0.00 | 2.304 | 5.53 | 0.13 | 1.4 | 98.6 | 0.0 | 1.58 | 1.53 | 0.61 | 0.79 | 2.28 | 16016 | 1834 | 14 | 0 | 56 | 0 | 0 | logfile |
✔ | 7Uo9 | 26642 | 2023-04-26 | 2022-04-12 | 3.13 | 3.95 | 3.13 | 3.6 | 0.007 | 0.62 | 0.0 | 0.04 | 11.80 | 0.00 | 1.819 | 5.07 | 0.25 | 5.9 | 94.1 | 0.0 | -0.67 | 0.88 | 0.82 | 3.15 | 3.6 | 0.003 | 0.49 | 0.0 | 0.04 | 12.82 | 0.00 | 1.831 | 6.64 | 0.08 | 3.8 | 96.2 | 0.0 | 0.60 | 1.60 | 0.87 | 0.80 | 2.94 | 23863 | 1375 | 12 | 67 | 4 | 245 | 11305 | logfile |
✔ | 7V0M | 26944 | 2023-04-20 | 2022-05-10 | 2.7 | 2.46 | 2.64 | 2.5 | 0.003 | 0.56 | 0.0 | 0.04 | 18.10 | 0.00 | 2.240 | 3.55 | 1.29 | 3.3 | 96.7 | 0.0 | 0.52 | 0.56 | 0.89 | 4.90 | 2.5 | 0.003 | 0.49 | 0.0 | 0.04 | 18.18 | 0.00 | 2.176 | 4.37 | 2.33 | 3.3 | 96.7 | 0.0 | 1.83 | 0.25 | 0.55 | 0.88 | 4.09 | 3724 | 483 | 4 | 0 | 0 | 60 | 0 | logfile |
✔ | 7P0Z | 13153 | 2023-04-22 | 2021-07-01 | 2.43 | 2.02 | 2.41 | 2.2 | 0.016 | 0.94 | 0.0 | 0.06 | 14.02 | 0.01 | 2.141 | 7.29 | 0.00 | 4.3 | 95.7 | 0.0 | 1.90 | 0.83 | 0.86 | 2.91 | 2.3 | 0.002 | 0.49 | 0.0 | 0.03 | 18.12 | 0.00 | 2.239 | 4.38 | 1.64 | 0.7 | 99.3 | 0.0 | 5.47 | 0.55 | 0.84 | 0.87 | 2.18 | 12873 | 1652 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DBH | 27284 | 2023-04-28 | 2022-06-14 | 2.2 | 2.17 | 2.27 | 2.1 | 0.007 | 0.69 | 0.0 | 0.05 | 15.18 | 0.00 | 1.957 | 4.90 | 1.94 | 3.4 | 96.6 | 0.0 | 0.54 | 0.72 | 0.85 | 5.77 | 2.1 | 0.002 | 0.49 | 0.0 | 0.05 | 15.66 | 0.00 | 1.961 | 5.07 | 1.78 | 3.7 | 96.3 | 0.0 | 1.16 | 0.91 | 0.74 | 0.90 | 5.57 | 28884 | 3708 | 36 | 0 | 60 | 24 | 0 | logfile |
✔ | 7SK3 | 25171 | 2023-04-22 | 2021-10-19 | 3.8 | 4.06 | — | 4.0 | 0.005 | 0.68 | 0.0 | 0.07 | 13.73 | 0.00 | 2.143 | 5.05 | 0.00 | 5.0 | 95.0 | 0.0 | 0.15 | 0.69 | 0.82 | 2.20 | 4.0 | 0.003 | 0.49 | 0.0 | 0.04 | 14.81 | 0.00 | 2.111 | 7.69 | 0.00 | 4.4 | 95.6 | 0.0 | 0.33 | 0.36 | 0.69 | 0.82 | 1.67 | 13294 | 831 | 7 | 0 | 8 | 0 | 6491 | logfile |
✔ | 7T4N | 25681 | 2023-04-20 | 2021-12-10 | 2.35 | 2.66 | 2.38 | 2.5 | 0.002 | 0.42 | 0.0 | 0.04 | 16.22 | 0.00 | 2.207 | 4.39 | 1.25 | 1.0 | 99.0 | 0.0 | 0.87 | 0.63 | 0.85 | 3.82 | 2.5 | 0.003 | 0.49 | 0.0 | 0.04 | 16.48 | 0.00 | 2.284 | 5.93 | 1.53 | 1.0 | 99.0 | 0.0 | 1.61 | 0.24 | 0.66 | 0.87 | 3.71 | 6476 | 803 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FHR | 29100 | 2023-04-20 | 2022-12-14 | 2.9 | 3.23 | 2.98 | 3.2 | 0.009 | 0.82 | 0.0 | 0.05 | 13.01 | 0.01 | 2.289 | 5.32 | 0.65 | 4.2 | 95.8 | 0.0 | -1.64 | 0.63 | 0.86 | 4.29 | 3.2 | 0.002 | 0.49 | 0.0 | 0.04 | 14.64 | 0.00 | 2.217 | 3.88 | 1.17 | 2.4 | 97.6 | 0.0 | 0.92 | 0.93 | 0.59 | 0.85 | 2.96 | 7306 | 950 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7SK9 | 25177 | 2023-04-22 | 2021-10-19 | 3.7 | 4.01 | — | 3.9 | 0.007 | 0.83 | 0.0 | 0.24 | 13.94 | 0.00 | 2.028 | 4.76 | 0.00 | 4.4 | 95.6 | 0.0 | 1.15 | 0.71 | 0.81 | 1.92 | 3.9 | 0.003 | 0.49 | 0.0 | 0.04 | 14.87 | 0.00 | 2.033 | 6.18 | 0.00 | 4.0 | 96.0 | 0.0 | 1.35 | 0.43 | 0.70 | 0.81 | 1.96 | 11261 | 716 | 4 | 0 | 3 | 0 | 5561 | logfile |
✔ | 7WHN | 32505 | 2023-04-21 | 2021-12-31 | 3.3 | 2.99 | — | 3.2 | 0.009 | 0.80 | 0.0 | 0.05 | 13.81 | 0.01 | 2.147 | 7.64 | 0.10 | 4.5 | 95.5 | 0.0 | -1.29 | 0.41 | 0.83 | 2.92 | 3.2 | 0.002 | 0.49 | 0.0 | 0.04 | 15.00 | 0.00 | 2.281 | 5.47 | 0.10 | 2.7 | 97.3 | 0.0 | 0.94 | 0.40 | 0.37 | 0.82 | 2.21 | 9284 | 1170 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oLA | 12975 | 2023-04-25 | 2021-05-19 | 3.3 | 3.85 | 3.21 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 15.07 | 0.00 | 2.023 | 7.61 | 0.00 | 2.7 | 97.3 | 0.0 | 1.22 | 0.88 | 0.85 | 2.96 | 3.3 | 0.002 | 0.49 | 0.0 | 0.04 | 15.96 | 0.00 | 1.985 | 8.52 | 0.00 | 2.6 | 97.4 | 0.0 | 1.16 | 0.89 | 0.88 | 0.89 | 2.86 | 19719 | 2394 | 10 | 0 | 7 | 0 | 0 | logfile |