Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NCA	12264	2023-02-19	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.49	0.0	0.05	12.94	0.00	2.433	0.77	0.39	2.7	97.3	0.0	-2.96	0.76	0.69	0.85	3.43	10428	732	12	0	0	0	5376	logfile
✔	7ZGo	14709	2023-02-18	2022-04-04	2.55	2.04	2.53	2.6	0.008	1.24	0.0	0.06	16.84	0.00	2.170	9.40	0.00	3.4	96.6	0.0	1.35	0.50	0.76	3.14	2.6	0.002	0.50	0.0	0.04	16.48	0.00	2.254	8.96	0.52	3.1	96.9	0.0	2.18	1.09	0.53	0.79	3.51	7754	940	6	0	21	24	0	logfile
✔	6WCB	21605	2023-02-20	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.50	0.0	0.04	15.55	0.00	2.072	3.71	0.16	1.7	98.3	0.0	3.40	1.29	0.54	0.79	2.46	11647	734	6	0	7	40	5904	logfile
✔	8D9K	27264	2023-02-17	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	9.12	0.00	2.270	6.37	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.002	0.50	0.0	0.04	11.60	0.00	2.170	10.39	0.00	2.6	97.4	0.0	0.62	0.58	0.90	0.85	2.17	5708	546	3	65	0	0	0	logfile
✔	7SXR	25503	2023-02-25	2021-11-24	3.0	3.85	—	3.2	0.004	0.76	0.0	0.05	12.80	0.01	2.287	3.36	0.00	1.9	98.1	0.0	-0.27	0.87	0.84	2.71	3.2	0.002	0.50	0.0	0.04	13.90	0.00	2.183	6.37	0.33	2.1	97.9	0.0	0.92	0.50	0.87	0.87	2.45	25236	3120	24	0	60	0	0	logfile
✔	7PKP	13476	2023-02-23	2021-08-26	3.1	3.25	—	3.2	0.008	0.69	0.0	0.04	14.18	0.00	2.238	15.25	0.00	8.7	91.3	0.0	-4.06	0.76	0.83	2.79	3.2	0.003	0.50	0.0	0.04	16.14	0.00	2.275	7.09	0.44	5.1	94.9	0.0	-0.60	1.16	0.71	0.82	2.58	20360	2504	8	0	0	0	0	logfile
✔	7oAE	12775	2023-02-20	2021-04-19	2.0	2.65	—	2.2	0.008	0.53	0.0	0.05	9.44	0.00	2.440	0.99	0.00	2.6	97.4	0.0	0.22	0.77	0.91	6.46	2.2	0.002	0.50	0.0	0.04	15.02	0.00	2.263	6.20	0.54	1.4	98.6	0.0	0.51	2.66	0.78	0.93	6.32	12768	1680	42	0	0	0	0	logfile
✔	7JPQ	22419	2023-02-21	2020-08-09	3.5	3.56	—	3.5	0.008	1.14	0.0	0.06	14.27	0.01	2.088	2.16	0.00	3.0	97.0	0.0	-2.05	0.71	0.81	2.78	3.5	0.002	0.50	0.0	0.04	15.97	0.00	1.994	4.50	0.19	2.7	97.3	0.0	0.69	0.56	0.72	0.82	1.89	13863	1691	6	0	4	0	0	logfile
✔	7R9U	24331	2023-02-18	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.002	0.50	0.0	0.04	8.43	0.00	2.006	8.03	0.00	2.6	97.4	0.0	0.60	2.37	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	7N0H	24106	2023-02-26	2021-05-25	3.34	3.96	—	3.6	0.004	0.59	0.0	0.05	14.62	0.00	2.156	8.41	0.00	3.8	96.2	0.0	0.29	0.84	0.83	2.11	3.6	0.002	0.50	0.0	0.04	15.66	0.00	2.193	7.57	0.23	3.2	96.8	0.0	0.61	0.35	0.84	0.84	1.76	27974	3469	25	0	64	0	0	logfile
✔	7SMM	25202	2023-02-22	2021-10-26	2.5	2.86	—	2.7	0.005	0.72	0.0	0.04	14.54	0.00	2.099	3.47	0.00	4.1	95.9	0.0	1.36	0.80	0.86	4.48	2.7	0.003	0.50	0.0	0.04	14.96	0.00	2.261	5.39	1.01	3.1	96.9	0.0	1.77	0.30	0.81	0.88	3.98	17256	2030	20	0	39	63	0	logfile
✔	7PX8	13691	2023-02-23	2021-10-08	3.27	3.27	—	3.2	0.002	0.52	0.0	0.04	12.52	0.01	2.236	3.53	0.05	2.2	97.8	0.0	-0.37	0.78	0.86	3.66	3.2	0.002	0.50	0.0	0.04	13.58	0.00	2.215	3.84	0.27	2.6	97.4	0.0	0.04	0.19	0.80	0.88	3.41	21409	2798	4	0	0	0	0	logfile
✔	7QKW	14055	2023-02-17	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.50	0.0	0.05	16.64	0.00	2.420	1.91	2.54	4.4	95.6	0.0	-2.76	1.36	0.41	0.84	5.96	4707	306	6	0	0	0	2439	logfile
✔	6N27	9325	2023-02-21	2018-11-12	3.0	3.04	—	3.0	0.007	0.88	0.0	0.05	9.61	0.01	2.305	3.26	0.00	1.8	98.2	0.0	-2.91	0.72	0.86	4.69	3.0	0.002	0.50	0.0	0.04	14.81	0.00	2.289	5.14	0.92	1.8	98.2	0.0	1.33	1.19	0.73	0.87	3.49	13930	1695	10	0	5	0	0	logfile
✔	7XU1	33455	2023-02-21	2022-05-18	3.0	3.16	3.23	3.1	0.011	0.84	1.0	0.06	13.40	0.01	2.068	2.28	0.24	3.9	96.1	0.0	-0.92	0.81	0.82	3.49	3.1	0.003	0.50	1.0	0.05	14.41	0.00	1.992	4.41	0.45	3.9	96.1	0.0	-0.50	0.35	0.83	0.85	3.31	52082	3309	19	0	69	0	25165	logfile
✔	6ZBD	11151	2023-02-23	2020-06-08	3.21	3.97	3.37	3.6	0.010	1.19	0.0	0.08	13.68	0.01	2.466	0.97	0.00	0.9	99.1	0.0	0.87	0.85	0.78	1.78	3.6	0.002	0.50	0.0	0.03	15.08	0.00	2.000	5.02	0.27	1.5	98.5	0.0	3.93	2.62	0.86	0.80	1.77	19519	1159	4	0	0	0	9896	logfile
✔	8CYB	27073	2023-02-21	2022-05-23	2.7	3.56	2.88	3.2	0.002	0.44	1.0	0.04	13.74	0.00	1.966	7.28	0.20	5.0	94.7	0.3	-0.12	0.80	0.77	1.69	3.2	0.003	0.50	1.0	0.04	14.54	0.00	1.954	8.58	0.64	5.3	94.4	0.3	-0.38	0.38	0.80	0.78	2.08	54126	3432	29	0	114	0	25897	logfile
✔	7U6V	26381	2023-02-21	2022-03-06	4.1	3.17	4.21	6.8	0.002	0.52	0.0	0.04	13.79	0.00	1.948	13.74	1.57	4.7	95.3	0.0	-0.16	0.64	0.29	—	6.8	0.002	0.50	0.0	0.04	13.89	0.00	1.956	14.57	1.75	6.1	93.9	0.0	-0.54	0.42	0.82	0.72	—	9997	637	14	0	0	23	4901	logfile
✔	7NS3	12559	2023-02-21	2021-03-05	3.5	3.47	3.37	3.4	0.004	0.58	0.0	0.04	14.32	0.00	2.079	6.57	0.00	6.4	93.6	0.0	0.19	0.83	0.86	2.56	3.4	0.003	0.50	0.0	0.04	15.43	0.00	2.175	4.96	0.00	4.8	95.1	0.1	0.91	0.22	0.83	0.86	2.04	14445	1849	6	0	0	0	0	logfile
✔	7SMR	25206	2023-02-22	2021-10-26	2.77	2.96	—	2.9	0.005	0.68	0.0	0.05	13.97	0.00	2.131	4.30	0.00	2.8	97.2	0.0	1.03	0.80	0.87	4.35	2.9	0.003	0.50	0.0	0.04	14.77	0.00	2.229	6.67	0.86	2.0	98.0	0.0	1.41	1.12	0.80	0.88	3.97	17037	2022	20	0	34	21	0	logfile

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