Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G0L	29657	2023-08-10	2023-01-31	3.39	4.48	3.47	3.9	0.003	0.48	0.0	0.03	16.92	0.00	2.289	5.58	0.10	2.0	98.0	0.0	3.32	0.93	0.90	2.06	3.9	0.002	0.48	0.0	0.03	17.10	0.00	2.248	5.69	0.10	2.0	98.0	0.0	3.31	0.18	0.93	0.90	2.07	8872	1088	3	0	1	0	0	logfile
✔	7K0Q	22608	2023-08-10	2020-09-04	3.3	3.61	—	3.5	0.006	0.70	0.0	0.05	12.64	0.00	2.116	5.18	0.00	3.3	96.7	0.0	0.45	0.70	0.85	3.35	3.5	0.002	0.48	0.0	0.04	14.21	0.00	2.189	4.84	0.11	2.5	97.5	0.0	1.24	1.46	0.73	0.87	2.87	8778	1107	5	0	2	0	0	logfile
✔	7NAD	24270	2023-08-25	2021-06-21	3.04	2.90	3.01	3.0	0.002	0.52	0.0	0.04	13.90	0.00	2.159	6.43	0.34	3.4	96.6	0.0	0.96	0.69	0.79	3.04	3.0	0.002	0.48	0.0	0.03	14.91	0.00	2.100	5.75	0.07	3.3	96.7	0.0	1.32	0.29	0.71	0.83	2.72	43123	3338	27	756	1	0	0	logfile
✔	7VYQ	32211	2023-08-14	2021-11-15	3.13	3.33	—	3.4	0.005	0.78	0.0	0.04	17.69	0.01	2.056	6.00	0.00	2.8	97.2	0.0	-1.84	0.64	0.89	3.89	3.4	0.003	0.48	0.0	0.04	16.70	0.00	1.980	7.45	0.00	4.3	95.7	0.0	-0.98	1.21	0.58	0.87	3.53	17080	1120	8	0	8	0	8340	logfile
✔	8D96	27256	2023-08-11	2022-06-09	3.35	4.21	3.32	3.9	0.002	0.58	0.0	0.04	17.10	0.00	1.836	7.87	0.11	2.5	97.3	0.2	2.00	0.89	0.85	1.96	3.8	0.002	0.48	0.0	0.04	17.33	0.00	1.431	5.89	0.32	2.7	97.1	0.2	1.92	0.41	0.90	0.88	1.95	9203	1056	6	30	4	0	0	logfile
✔	8iP5	35632	2023-08-12	2023-03-14	2.5	3.18	2.56	3.0	0.002	0.43	0.0	0.04	12.76	0.00	2.236	6.28	0.00	1.6	98.4	0.0	3.88	0.74	0.84	3.08	3.0	0.002	0.49	0.0	0.04	15.44	0.00	2.247	6.28	0.35	1.6	98.4	0.0	3.63	0.56	0.72	0.84	3.08	12928	1600	12	0	3	5	0	logfile
✔	7LGU	23329	2023-08-12	2021-01-21	2.3	2.77	—	2.7	0.003	0.93	0.0	0.04	14.18	0.00	2.197	8.08	1.15	1.6	98.4	0.0	1.41	0.64	0.84	5.76	2.7	0.003	0.49	0.0	0.04	14.68	0.00	2.175	5.63	0.88	1.6	98.4	0.0	1.33	0.69	0.64	0.85	5.75	11597	1360	6	0	110	111	0	logfile
✔	8GHF	40044	2023-08-21	2023-03-10	2.7	3.20	2.86	3.2	0.002	0.60	0.0	0.04	17.84	0.01	2.321	2.83	3.45	2.4	97.6	0.0	-0.85	0.70	0.88	3.69	3.2	0.002	0.49	0.0	0.04	17.28	0.00	2.214	3.82	3.00	3.0	97.0	0.0	0.01	0.31	0.61	0.84	3.89	31920	3568	8	0	200	0	0	logfile
✔	7RHG	24460	2023-08-13	2021-07-17	2.88	2.68	—	2.7	0.003	0.57	0.0	0.04	15.36	0.00	2.196	5.80	0.00	1.7	98.3	0.0	0.74	0.69	0.87	3.86	2.8	0.003	0.49	0.0	0.04	17.08	0.00	2.130	7.79	0.93	1.5	98.5	0.0	2.09	0.33	0.69	0.89	3.75	14753	1790	8	0	4	0	0	logfile
✔	6ZBC	11150	2023-08-15	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	1.08	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.49	0.0	0.03	15.14	0.00	2.071	3.69	0.18	1.4	98.6	0.0	4.05	0.84	0.85	0.81	1.66	19534	1160	4	0	0	0	9902	logfile
✔	7V0M	26944	2023-08-09	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.003	0.49	0.0	0.04	18.18	0.00	2.176	4.37	2.33	3.3	96.7	0.0	1.83	0.25	0.55	0.88	4.09	3724	483	4	0	0	60	0	logfile
✔	7RXH	24731	2023-08-09	2021-08-23	2.3	3.07	—	2.8	0.009	1.40	0.0	0.05	19.48	0.00	2.211	13.92	0.56	2.7	97.1	0.2	-0.87	0.63	0.78	3.25	2.8	0.004	0.49	0.0	0.04	15.67	0.00	2.016	13.47	1.30	3.7	96.3	0.0	2.12	1.67	0.60	0.91	4.20	5631	626	1	0	18	24	48	logfile
✔	8CUD	26998	2023-08-09	2022-05-17	2.94	2.75	2.95	2.8	0.005	0.67	0.0	0.05	15.61	0.00	2.433	3.10	0.00	1.9	98.1	0.0	1.42	0.49	0.83	1.26	2.8	0.002	0.49	0.0	0.04	17.07	0.00	2.207	4.57	2.22	1.4	98.6	0.0	2.06	0.93	0.48	0.84	1.47	3294	433	1	0	0	2	0	logfile
✔	8CPV	16787	2023-08-23	2023-03-03	1.76	1.73	1.80	1.7	0.006	0.91	0.0	0.07	14.41	0.01	2.182	2.58	0.00	1.0	99.0	0.0	2.15	0.78	0.84	8.93	1.7	0.002	0.49	0.0	0.03	14.99	0.00	2.274	3.00	0.00	1.8	98.2	0.0	4.87	1.19	0.81	0.87	8.51	35855	4152	72	0	38	1737	0	logfile
✔	6MRT	9212	2023-08-09	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.38	0.00	2.211	3.09	1.33	0.6	99.4	0.0	5.41	3.08	0.73	0.87	2.47	26868	3420	12	0	0	0	0	logfile
✔	8ioA	35613	2023-08-12	2023-03-10	2.63	3.39	2.69	3.2	0.005	0.52	0.0	0.04	10.64	0.00	1.866	9.18	0.53	3.5	96.5	0.0	0.69	0.69	0.89	4.43	3.1	0.002	0.49	0.0	0.04	12.69	0.00	2.040	8.53	0.98	2.4	97.6	0.0	1.43	1.21	0.66	0.87	3.58	12570	1576	4	0	4	0	0	logfile
✔	8HMV	34903	2023-08-10	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.003	0.49	0.0	0.04	15.50	0.00	2.170	4.71	0.45	2.6	97.4	0.0	0.81	0.37	0.66	0.87	3.21	8127	1022	5	0	0	0	0	logfile
✔	7TU7	26128	2023-08-24	2022-02-02	2.5	2.05	2.51	1.9	0.010	0.78	0.0	0.04	17.26	0.00	1.947	2.34	0.92	2.5	97.5	0.0	0.68	0.81	0.81	3.84	1.9	0.003	0.49	0.0	0.04	17.09	0.00	1.964	3.18	1.33	2.2	97.8	0.0	1.31	0.33	0.84	0.85	3.88	19932	2586	12	0	24	0	0	logfile
✔	6X0V	21985	2023-08-09	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✔	6UCB	20727	2023-08-22	2019-09-15	3.28	3.46	—	3.5	0.009	0.76	0.0	0.05	13.85	0.01	2.152	5.74	0.00	5.1	94.9	0.0	-3.14	0.64	0.76	2.69	3.4	0.003	0.49	0.0	0.04	14.74	0.00	2.126	9.81	0.00	4.1	95.9	0.0	0.35	0.95	0.66	0.81	2.72	32324	2044	16	0	30	0	15694	logfile

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