Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MRT	9212	2023-08-09	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.38	0.00	2.211	3.09	1.33	0.6	99.4	0.0	5.41	3.08	0.73	0.87	2.47	26868	3420	12	0	0	0	0	logfile
✔	7TU7	26128	2023-08-24	2022-02-02	2.5	2.05	2.51	1.9	0.010	0.78	0.0	0.04	17.26	0.00	1.947	2.34	0.92	2.5	97.5	0.0	0.68	0.81	0.81	3.84	1.9	0.003	0.49	0.0	0.04	17.09	0.00	1.964	3.18	1.33	2.2	97.8	0.0	1.31	0.33	0.84	0.85	3.88	19932	2586	12	0	24	0	0	logfile
✔	7TU6	26127	2023-08-24	2022-02-02	2.7	2.11	2.73	2.0	0.007	0.79	6.0	0.06	13.43	0.01	1.892	3.29	0.62	3.0	97.0	0.0	0.38	0.77	0.76	2.74	1.9	0.003	0.49	0.0	0.04	17.02	0.00	2.000	5.23	1.19	3.1	96.9	0.0	1.01	0.48	0.82	0.82	3.00	20028	2580	12	0	18	0	0	logfile
✔	7MiS	23863	2023-08-18	2021-04-17	2.8	2.48	—	2.8	0.003	0.50	0.0	0.04	14.51	0.00	1.917	3.78	0.00	3.8	96.2	0.0	0.91	0.69	0.80	3.35	2.8	0.003	0.49	0.0	0.04	16.11	0.00	1.856	4.05	0.63	3.8	96.2	0.0	1.04	0.35	0.70	0.82	3.05	25893	1616	6	0	6	0	12854	logfile
✔	7Uo9	26642	2023-08-17	2022-04-12	3.13	3.95	3.13	3.6	0.007	0.62	0.0	0.04	11.80	0.00	1.819	5.07	0.25	5.9	94.1	0.0	-0.67	0.88	0.82	3.15	3.6	0.003	0.49	0.0	0.04	12.82	0.00	1.831	6.64	0.08	3.8	96.2	0.0	0.60	1.60	0.87	0.80	2.94	23863	1375	12	67	4	245	11305	logfile
✔	7MiR	23862	2023-08-18	2021-04-17	2.5	2.44	—	2.6	0.003	0.48	0.0	0.04	14.23	0.00	1.947	2.91	0.00	3.2	96.8	0.0	1.82	0.72	0.81	3.71	2.6	0.003	0.49	0.0	0.04	15.91	0.00	1.944	3.49	0.70	3.3	96.7	0.0	1.72	1.14	0.73	0.84	3.52	25745	1603	5	0	5	0	12748	logfile
✔	7SFK	25091	2023-08-10	2021-10-04	2.74	2.96	—	3.1	0.008	0.97	0.0	0.04	18.02	0.01	2.265	3.61	0.43	1.8	98.2	0.0	2.37	0.74	0.84	3.90	3.0	0.003	0.49	0.0	0.04	17.19	0.01	2.160	5.04	0.43	2.4	97.6	0.0	1.08	0.34	0.67	0.83	4.06	7419	852	9	0	24	57	0	logfile
✔	8FHR	29100	2023-08-10	2022-12-14	2.9	3.23	2.98	3.2	0.009	0.82	0.0	0.05	13.01	0.01	2.289	5.32	0.65	4.2	95.8	0.0	-1.64	0.63	0.86	4.29	3.2	0.002	0.49	0.0	0.04	14.64	0.00	2.217	3.88	1.17	2.4	97.6	0.0	0.92	0.93	0.59	0.85	2.96	7306	950	4	0	4	0	0	logfile
✔	7T4N	25681	2023-08-09	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	7K0i	22598	2023-08-14	2020-09-04	3.3	3.75	—	3.7	0.005	0.64	0.0	0.05	12.84	0.00	2.222	6.32	0.25	4.0	96.0	0.0	0.10	0.72	0.81	2.93	3.7	0.002	0.49	0.0	0.04	14.17	0.00	2.038	6.09	0.37	2.2	97.8	0.0	0.83	0.30	0.76	0.83	2.45	15366	1954	10	0	6	0	0	logfile
✔	7PHR	13427	2023-08-12	2021-08-18	3.08	3.38	—	3.4	0.006	0.77	0.0	0.05	12.63	0.00	2.475	5.22	0.08	2.6	97.4	0.0	-0.08	0.66	0.79	3.56	3.4	0.003	0.49	0.0	0.04	14.68	0.00	2.217	6.19	0.32	2.7	97.3	0.0	0.82	0.40	0.66	0.81	3.26	11511	1443	14	0	6	0	0	logfile
✔	8D67	27219	2023-08-12	2022-06-06	3.3	3.45	2.92	3.5	0.009	0.97	0.0	0.07	13.90	0.01	2.261	6.52	0.36	7.5	92.5	0.0	-1.52	0.68	0.82	3.08	3.5	0.002	0.49	0.0	0.04	15.33	0.00	2.247	4.52	0.22	4.5	95.5	0.0	-0.19	1.17	0.69	0.83	2.67	12570	1540	10	0	0	0	0	logfile
✔	7K0L	22601	2023-08-10	2020-09-04	3.4	3.83	—	3.7	0.004	0.60	0.0	0.04	12.59	0.00	2.141	4.28	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.49	0.0	0.04	13.87	0.00	2.212	5.13	0.12	2.0	98.0	0.0	1.07	1.04	0.75	0.88	2.70	7619	964	4	0	2	0	0	logfile
✔	7SK9	25177	2023-08-12	2021-10-19	3.7	4.01	—	3.9	0.007	0.83	0.0	0.24	13.94	0.00	2.028	4.76	0.00	4.4	95.6	0.0	1.15	0.71	0.81	1.92	3.9	0.003	0.49	0.0	0.04	14.87	0.00	2.033	6.18	0.00	4.0	96.0	0.0	1.35	0.43	0.70	0.81	1.96	11261	716	4	0	3	0	5561	logfile
✔	6YE4	10789	2023-08-11	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.49	0.0	0.03	16.29	0.00	2.376	4.96	0.00	2.4	97.6	0.0	3.87	0.94	0.65	0.85	1.22	9140	1180	10	0	5	0	0	logfile
✔	7RXH	24731	2023-08-09	2021-08-23	2.3	3.07	—	2.8	0.009	1.40	0.0	0.05	19.48	0.00	2.211	13.92	0.56	2.7	97.1	0.2	-0.87	0.63	0.78	3.25	2.8	0.004	0.49	0.0	0.04	15.67	0.00	2.016	13.47	1.30	3.7	96.3	0.0	2.12	1.67	0.60	0.91	4.20	5631	626	1	0	18	24	48	logfile
✔	7STN	25434	2023-08-18	2021-11-14	3.19	3.43	—	3.4	0.008	0.75	0.0	0.04	9.95	0.00	2.366	1.05	0.15	2.2	97.8	0.0	2.30	0.66	0.80	3.21	3.4	0.004	0.49	0.0	0.04	12.77	0.00	2.129	3.31	0.00	4.2	95.8	0.0	1.91	1.29	0.64	0.82	2.88	25188	1580	4	0	10	0	12256	logfile
✔	8DBH	27284	2023-08-20	2022-06-14	2.2	2.17	2.27	2.1	0.007	0.69	0.0	0.05	15.18	0.00	1.957	4.90	1.94	3.4	96.6	0.0	0.54	0.72	0.85	5.77	2.1	0.002	0.49	0.0	0.05	15.66	0.00	1.961	5.07	1.78	3.7	96.3	0.0	1.16	0.91	0.74	0.90	5.57	28884	3708	36	0	60	24	0	logfile
✔	6X0V	21985	2023-08-09	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✔	8CUE	26999	2023-08-24	2022-05-17	3.2	3.57	3.25	3.7	0.010	1.82	0.0	0.04	21.60	0.00	2.541	2.88	0.00	1.5	98.5	0.0	0.78	0.73	0.83	2.63	3.6	0.004	0.49	0.0	0.03	15.91	0.00	2.304	6.89	0.21	0.3	99.7	0.0	2.13	0.62	0.69	0.84	2.47	37240	4900	140	0	70	0	0	logfile

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