Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DTo	27706	2023-08-16	2022-07-26	3.57	3.93	3.47	3.6	0.007	0.94	0.0	0.06	13.87	0.01	2.241	3.34	0.00	4.6	95.4	0.0	-1.43	0.81	0.84	2.58	3.6	0.002	0.55	0.0	0.04	15.01	0.00	2.090	7.59	0.14	3.7	96.3	0.0	-0.44	0.26	0.81	0.85	2.42	20923	2445	54	0	146	0	0	logfile
✔	7ZW6	14993	2023-08-10	2022-05-18	3.7	3.96	3.76	3.7	0.003	0.53	0.0	0.04	16.90	0.00	1.934	8.56	0.31	2.7	97.3	0.0	2.29	0.78	0.59	0.31	3.7	0.002	0.51	0.0	0.04	17.93	0.00	1.920	55.57	0.33	3.2	96.8	0.0	2.03	1.98	0.83	0.72	0.56	57112	6344	8	0	0	0	6176	logfile
✔	7ZXQ	15014	2023-08-11	2022-05-22	3.53	4.17	3.59	3.7	0.003	0.66	0.0	0.04	12.72	0.01	2.027	8.02	0.00	3.0	97.0	0.0	2.45	0.54	0.69	1.54	3.8	0.002	0.60	0.0	0.04	14.83	0.00	2.272	8.27	0.18	4.1	95.9	0.0	3.45	1.53	0.57	0.83	1.30	9930	1236	6	0	0	0	0	logfile
✔	8G9F	29864	2023-08-24	2023-02-21	3.2	3.77	3.13	3.2	0.003	0.50	0.0	0.04	16.16	0.00	2.257	2.77	0.00	3.1	96.9	0.0	0.34	0.89	0.83	3.53	3.2	0.002	0.48	0.0	0.04	15.99	0.00	2.029	3.81	0.05	2.6	97.4	0.0	1.72	2.00	0.90	0.87	3.33	37540	2321	7	0	4	0	18758	logfile
✔	7XK1	33240	2023-08-15	2022-04-19	4.3	4.14	4.19	3.9	0.004	0.61	0.0	0.04	12.74	0.00	2.217	6.34	3.07	4.2	95.8	0.0	-1.21	0.82	0.70	—	3.9	0.002	0.65	0.0	0.04	12.66	0.00	2.164	9.60	0.00	3.9	96.1	0.0	-0.80	1.48	0.83	0.73	—	18552	1966	4	144	2	0	0	logfile
✔	8H01	34408	2023-08-21	2022-09-27	3.7	4.17	3.57	3.7	0.004	0.57	0.0	0.05	13.16	0.00	2.203	9.28	0.00	3.8	96.1	0.1	-0.08	0.85	0.84	2.22	3.7	0.002	0.56	0.0	0.04	14.47	0.00	2.170	9.63	0.15	3.4	96.6	0.0	-0.08	0.36	0.85	0.85	1.96	30144	3803	27	0	44	0	0	logfile
✔	7W3M	32284	2023-08-10	2021-11-25	3.5	4.51	—	3.0	0.003	0.78	0.0	0.05	14.10	0.01	1.953	5.95	0.14	6.1	93.8	0.1	-1.11	0.79	0.75	1.86	3.0	0.002	0.60	0.0	0.04	15.32	0.00	2.054	11.44	0.14	6.2	93.7	0.0	0.44	0.39	0.82	0.77	1.72	109020	13879	53	0	5	0	0	logfile
✔	8BZo	16344	2023-08-09	2022-12-15	3.5	3.72	3.51	3.7	0.005	0.73	1.0	0.05	16.41	0.01	2.231	13.28	0.99	5.6	94.2	0.2	-1.51	0.64	0.75	1.73	3.7	0.002	0.58	0.0	0.04	16.69	0.00	2.267	8.47	0.20	4.5	95.5	0.0	-0.62	0.31	0.63	0.74	1.28	4834	614	3	0	0	0	0	logfile
✔	8iK3	35504	2023-08-16	2023-02-28	3.3	3.57	3.41	3.5	0.006	0.63	0.0	0.04	16.58	0.00	2.148	4.73	0.09	5.4	94.6	0.0	0.95	0.67	0.78	1.80	3.5	0.002	0.50	0.0	0.04	17.73	0.00	2.196	4.21	0.09	4.8	95.2	0.0	1.33	0.36	0.67	0.83	1.39	20938	2611	12	0	4	0	0	logfile
✔	7XDF	33146	2023-08-15	2022-03-27	2.72	2.97	2.81	3.1	0.014	0.93	0.0	0.05	12.95	0.01	2.065	12.10	0.00	1.5	98.5	0.0	0.28	0.69	0.84	4.34	3.1	0.002	0.51	0.0	0.04	15.89	0.00	2.131	8.23	1.66	1.1	98.9	0.0	0.84	0.95	0.68	0.85	3.88	17868	2204	8	0	12	0	0	logfile
✔	7XKT	33270	2023-08-24	2022-04-20	2.2	2.42	2.32	2.4	0.029	1.85	0.0	0.12	18.94	0.01	2.223	2.63	1.33	1.2	98.8	0.0	1.53	0.59	0.82	4.13	2.4	0.002	0.57	0.0	0.04	16.83	0.00	2.157	3.24	0.22	2.5	97.5	0.0	4.54	1.26	0.56	0.81	4.01	34488	1992	36	0	108	444	16008	logfile
✔	8SLY	40583	2023-08-15	2023-04-24	3.32	3.53	3.22	3.4	0.006	0.66	0.0	0.05	14.78	0.00	2.205	6.02	0.00	1.7	98.3	0.0	1.34	0.75	0.86	2.93	3.4	0.002	0.52	0.0	0.04	14.53	0.00	2.241	5.86	0.00	1.9	98.1	0.0	2.41	0.38	0.76	0.89	2.88	18257	2364	12	0	13	4	0	logfile
✔	7NS6	12561	2023-08-12	2021-03-05	3.18	4.09	—	3.2	0.004	0.85	25.0	0.06	13.20	0.00	2.006	12.56	0.00	2.3	97.6	0.1	0.71	0.87	0.81	1.73	3.2	0.002	0.58	0.0	0.04	14.34	0.00	2.115	10.89	0.20	3.2	96.8	0.0	0.28	1.52	0.89	0.86	2.02	55899	7109	20	0	52	0	0	logfile
✔	8HJ5	34833	2023-08-11	2022-11-22	3.0	3.45	3.17	3.4	0.003	0.85	0.0	0.04	14.82	0.00	2.244	8.22	0.19	5.4	94.6	0.0	-0.98	0.54	0.81	3.03	3.4	0.002	0.59	0.0	0.04	15.66	0.00	2.034	6.19	1.70	3.9	96.1	0.0	-0.10	0.31	0.55	0.81	2.48	9678	1232	7	0	1	0	0	logfile
✔	8i0Q	35106	2023-08-10	2023-01-11	4.45	4.83	5.07	4.4	0.003	0.59	0.0	0.04	12.56	0.00	2.167	9.44	0.00	5.1	94.9	0.0	-1.41	0.82	0.81	—	4.4	0.002	0.59	0.0	0.04	13.14	0.00	2.202	8.97	0.00	4.9	95.1	0.0	-0.72	0.47	0.82	0.82	—	8842	1192	8	0	0	0	0	logfile
✔	8FEL	29032	2023-08-11	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.55	0.0	0.04	12.77	0.00	2.288	10.75	0.00	3.8	96.2	0.0	0.13	1.69	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	7W3G	32279	2023-08-10	2021-11-25	3.2	4.83	—	2.8	0.004	0.76	0.0	0.05	14.06	0.01	2.137	5.57	0.31	6.1	93.8	0.1	-0.51	0.81	0.72	2.07	2.8	0.002	0.57	0.0	0.04	15.03	0.00	2.052	10.34	0.08	6.2	93.8	0.0	0.97	0.79	0.83	0.76	1.78	110741	14074	55	0	40	0	0	logfile
✔	8FZQ	29637	2023-08-11	2023-01-29	4.3	3.97	4.18	4.1	0.002	0.53	0.0	0.04	14.56	0.00	1.999	8.42	0.10	2.1	97.9	0.0	1.00	0.59	0.69	—	4.1	0.002	0.57	0.0	0.04	14.68	0.00	1.981	10.19	0.00	2.6	97.4	0.0	0.51	2.13	0.63	0.77	—	9244	1133	1	0	23	0	0	logfile
✔	7Y8Y	33686	2023-08-14	2022-06-24	3.0	3.24	3.07	3.2	0.003	0.61	0.0	0.04	17.75	0.00	2.201	6.52	2.51	5.7	94.1	0.2	-0.56	0.76	0.81	2.23	3.2	0.002	0.55	0.0	0.04	18.34	0.00	2.182	6.76	3.85	5.8	94.1	0.2	-0.27	1.14	0.76	0.82	2.18	17023	1971	5	55	4	0	0	logfile
✔	8SLX	40582	2023-08-15	2023-04-24	3.23	3.68	3.11	3.5	0.004	0.48	0.0	0.04	13.37	0.00	2.353	5.45	0.00	1.2	98.8	0.0	1.44	0.76	0.83	3.04	3.5	0.002	0.50	0.0	0.04	14.18	0.00	2.329	5.45	0.06	2.2	97.8	0.0	2.34	0.38	0.76	0.85	2.39	17885	2376	10	0	5	4	0	logfile

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