Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LQY	23491	2023-02-24	2021-02-15	3.19	3.30	—	3.3	0.011	1.42	0.0	0.18	21.18	0.01	2.186	4.96	0.69	6.6	93.3	0.2	-5.23	0.74	0.81	2.82	3.3	0.002	0.59	0.0	0.04	17.30	0.00	2.217	8.71	0.39	5.2	94.8	0.0	0.47	0.76	0.76	0.85	2.41	22954	2636	8	0	38	0	0	logfile
✔	7RZU	24778	2023-02-16	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	7RZR	24775	2023-02-16	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	6N7N	0359	2023-02-20	2018-11-27	3.5	3.55	—	3.5	0.006	0.99	0.0	0.06	14.77	0.00	1.975	4.24	0.74	5.5	94.5	0.0	-3.49	0.67	0.66	1.98	3.5	0.002	0.60	0.0	0.04	16.36	0.00	1.919	10.78	0.22	4.0	96.0	0.0	-0.96	1.69	0.69	0.69	1.43	12854	1608	12	15	10	0	0	logfile
✔	5WC0	8794	2023-02-20	2017-06-29	4.4	4.61	—	4.4	0.006	1.06	0.0	0.05	8.99	0.01	2.043	5.46	0.11	7.9	91.9	0.2	-4.78	0.87	0.79	—	4.4	0.002	0.60	0.0	0.04	10.53	0.00	2.157	9.52	0.00	4.6	95.4	0.0	0.25	1.58	0.87	0.81	—	11460	1660	12	0	6	0	0	logfile
✔	6RBG	4798	2023-02-23	2019-04-10	3.0	3.55	—	3.4	0.004	0.89	0.0	0.05	14.50	0.00	2.407	3.44	0.38	2.0	98.0	0.0	-6.39	0.67	0.80	3.37	3.4	0.002	0.63	0.0	0.04	17.29	0.00	2.160	4.66	0.86	1.5	98.5	0.0	0.85	0.56	0.71	0.84	2.57	19336	2464	8	0	0	0	0	logfile
✔	6CG0	7470	2023-02-23	2018-02-19	3.17	3.69	—	3.3	0.003	0.60	0.0	0.04	20.01	0.00	2.205	15.24	4.08	2.5	97.4	0.1	-2.47	0.91	0.85	3.15	3.3	0.002	0.54	0.0	0.04	20.27	0.00	2.134	7.49	0.35	2.1	97.9	0.0	0.58	0.52	0.93	0.88	2.73	20080	1989	13	212	4	0	0	logfile
✔	7ECW	31059	2023-02-24	2021-03-13	3.1	3.18	—	3.2	0.007	0.89	1.0	0.06	16.81	0.01	1.950	7.43	1.10	6.1	93.8	0.1	-3.73	0.75	0.82	2.64	3.2	0.002	0.54	0.0	0.04	17.52	0.00	2.221	6.10	0.14	5.2	94.8	0.0	-0.27	1.22	0.76	0.84	2.08	23089	2934	13	70	0	0	0	logfile
✔	7VG3	31964	2023-02-18	2021-09-14	3.73	3.86	—	3.8	0.006	1.15	2.0	0.06	12.99	0.01	1.935	7.51	5.13	10.8	88.7	0.6	-4.51	0.80	0.84	3.10	3.8	0.002	0.66	0.0	0.04	14.45	0.00	2.219	10.08	0.26	8.0	92.0	0.0	-1.23	1.07	0.79	0.83	1.81	8118	860	4	62	3	0	0	logfile
✔	6oFF	20044	2023-02-19	2019-03-29	3.2	3.32	—	3.3	0.009	0.83	0.0	0.04	10.88	0.01	2.147	4.73	0.00	3.9	96.1	0.0	-5.21	0.59	0.85	4.52	3.3	0.002	0.53	0.0	0.03	15.58	0.00	2.230	6.89	0.25	3.8	96.2	0.0	4.04	1.22	0.62	0.88	3.84	11016	1404	18	0	0	0	0	logfile
✔	7NPS	12518	2023-02-22	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.23	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.002	0.59	0.0	0.05	12.84	0.00	1.895	2.89	0.00	1.8	98.2	0.0	-0.02	0.68	0.83	0.83	2.26	55350	3732	9	0	0	0	27681	logfile
✔	6V1i	21012	2023-02-19	2019-11-20	3.8	4.10	3.68	3.8	0.007	0.90	0.0	0.04	9.43	0.01	2.433	1.82	0.00	1.5	98.5	0.0	-3.88	0.93	0.89	1.99	3.8	0.002	0.65	0.0	0.04	14.31	0.00	2.170	7.01	0.00	1.5	98.5	0.0	4.93	0.83	0.93	0.89	1.26	9711	1233	9	0	0	0	0	logfile
✔	8D9K	27264	2023-02-17	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	9.12	0.00	2.270	6.37	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.002	0.50	0.0	0.04	11.60	0.00	2.170	10.39	0.00	2.6	97.4	0.0	0.62	0.58	0.90	0.85	2.17	5708	546	3	65	0	0	0	logfile
✔	6oAY	20005	2023-02-26	2019-03-18	3.3	3.38	—	3.3	0.012	1.19	0.0	0.07	17.27	0.01	1.815	17.99	1.36	9.9	89.6	0.5	-5.50	0.72	0.77	2.04	3.3	0.002	0.69	0.0	0.04	18.05	0.00	2.124	16.15	0.66	5.9	94.0	0.1	-2.13	1.25	0.73	0.79	1.44	27261	3386	13	0	37	0	0	logfile
✔	7EKi	31168	2023-02-21	2021-04-05	3.18	3.70	—	3.6	0.005	0.61	0.0	0.06	12.25	0.00	2.230	5.79	0.88	5.3	94.7	0.0	-1.88	0.69	0.81	2.83	3.6	0.002	0.53	0.0	0.04	13.80	0.00	2.183	5.16	0.18	5.1	94.9	0.0	-0.53	0.39	0.70	0.82	2.46	16005	1975	15	0	20	0	0	logfile
✔	5BKJ	9406	2023-02-22	2021-03-19	3.5	3.68	—	3.7	0.006	0.81	0.0	0.06	14.99	0.00	2.251	4.94	1.09	4.1	95.9	0.0	-3.93	0.69	0.84	2.13	3.7	0.002	0.52	0.0	0.05	16.34	0.00	2.242	7.50	0.33	2.0	98.0	0.0	0.25	1.63	0.69	0.83	1.97	16939	2156	16	0	7	4	0	logfile
✔	6o7i	0642	2023-02-23	2019-03-07	3.2	3.32	—	3.3	0.012	1.17	0.0	0.07	12.13	0.01	2.131	7.58	1.03	8.2	91.8	0.0	-4.50	0.71	0.77	3.69	3.3	0.002	0.63	0.0	0.04	15.02	0.00	2.119	9.43	0.31	4.8	95.2	0.0	-0.98	1.72	0.74	0.83	2.58	20276	2377	15	49	97	0	0	logfile
✔	6K9L	9950	2023-02-27	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.75	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.68	0.0	0.04	9.69	0.00	2.113	12.20	0.00	7.1	92.9	0.0	0.72	1.80	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	7U6V	26381	2023-02-21	2022-03-06	4.1	3.17	4.21	6.8	0.002	0.52	0.0	0.04	13.79	0.00	1.948	13.74	1.57	4.7	95.3	0.0	-0.16	0.64	0.29	—	6.8	0.002	0.50	0.0	0.04	13.89	0.00	1.956	14.57	1.75	6.1	93.9	0.0	-0.54	0.42	0.82	0.72	—	9997	637	14	0	0	23	4901	logfile
✔	6GKM	0024	2023-02-19	2018-05-21	3.87	4.07	2.00	4.0	0.007	0.98	0.0	0.05	10.31	0.00	2.134	11.37	0.16	9.7	90.2	0.1	-3.66	0.63	0.81	2.22	4.0	0.002	0.71	0.0	0.04	13.76	0.00	2.109	20.52	0.16	7.9	92.1	0.0	-0.09	1.48	0.62	0.82	2.34	10562	689	4	28	2	0	4402	logfile

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