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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LQY | 23491 | 2023-02-24 | 2021-02-15 | 3.19 | 3.30 | — | 3.3 | 0.011 | 1.42 | 0.0 | 0.18 | 21.18 | 0.01 | 2.186 | 4.96 | 0.69 | 6.6 | 93.3 | 0.2 | -5.23 | 0.74 | 0.81 | 2.82 | 3.3 | 0.002 | 0.59 | 0.0 | 0.04 | 17.30 | 0.00 | 2.217 | 8.71 | 0.39 | 5.2 | 94.8 | 0.0 | 0.47 | 0.76 | 0.76 | 0.85 | 2.41 | 22954 | 2636 | 8 | 0 | 38 | 0 | 0 | logfile |
✔ | 7RZU | 24778 | 2023-02-16 | 2021-08-27 | 2.3 | 2.32 | — | 2.0 | 0.006 | 0.50 | 0.0 | 0.04 | 13.61 | 0.01 | 2.212 | 7.50 | 0.00 | 2.9 | 97.1 | 0.0 | 1.69 | 0.77 | 0.78 | 1.84 | 2.0 | 0.002 | 0.48 | 0.0 | 0.03 | 15.88 | 0.00 | 2.308 | 6.69 | 1.40 | 0.0 | 100.0 | 0.0 | 5.49 | 0.47 | 0.80 | 0.81 | 1.54 | 2439 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZR | 24775 | 2023-02-16 | 2021-08-27 | 2.27 | 2.24 | — | 2.0 | 0.007 | 0.40 | 0.0 | 0.04 | 14.34 | 0.00 | 2.436 | 3.23 | 0.00 | 1.9 | 98.1 | 0.0 | 2.50 | 0.79 | 0.80 | 3.37 | 2.0 | 0.002 | 0.36 | 0.0 | 0.03 | 15.29 | 0.00 | 2.294 | 4.44 | 0.71 | 0.0 | 100.0 | 0.0 | 6.53 | 0.31 | 0.81 | 0.83 | 3.42 | 2448 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N7N | 0359 | 2023-02-20 | 2018-11-27 | 3.5 | 3.55 | — | 3.5 | 0.006 | 0.99 | 0.0 | 0.06 | 14.77 | 0.00 | 1.975 | 4.24 | 0.74 | 5.5 | 94.5 | 0.0 | -3.49 | 0.67 | 0.66 | 1.98 | 3.5 | 0.002 | 0.60 | 0.0 | 0.04 | 16.36 | 0.00 | 1.919 | 10.78 | 0.22 | 4.0 | 96.0 | 0.0 | -0.96 | 1.69 | 0.69 | 0.69 | 1.43 | 12854 | 1608 | 12 | 15 | 10 | 0 | 0 | logfile |
✔ | 5WC0 | 8794 | 2023-02-20 | 2017-06-29 | 4.4 | 4.61 | — | 4.4 | 0.006 | 1.06 | 0.0 | 0.05 | 8.99 | 0.01 | 2.043 | 5.46 | 0.11 | 7.9 | 91.9 | 0.2 | -4.78 | 0.87 | 0.79 | — | 4.4 | 0.002 | 0.60 | 0.0 | 0.04 | 10.53 | 0.00 | 2.157 | 9.52 | 0.00 | 4.6 | 95.4 | 0.0 | 0.25 | 1.58 | 0.87 | 0.81 | — | 11460 | 1660 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6RBG | 4798 | 2023-02-23 | 2019-04-10 | 3.0 | 3.55 | — | 3.4 | 0.004 | 0.89 | 0.0 | 0.05 | 14.50 | 0.00 | 2.407 | 3.44 | 0.38 | 2.0 | 98.0 | 0.0 | -6.39 | 0.67 | 0.80 | 3.37 | 3.4 | 0.002 | 0.63 | 0.0 | 0.04 | 17.29 | 0.00 | 2.160 | 4.66 | 0.86 | 1.5 | 98.5 | 0.0 | 0.85 | 0.56 | 0.71 | 0.84 | 2.57 | 19336 | 2464 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CG0 | 7470 | 2023-02-23 | 2018-02-19 | 3.17 | 3.69 | — | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 20.01 | 0.00 | 2.205 | 15.24 | 4.08 | 2.5 | 97.4 | 0.1 | -2.47 | 0.91 | 0.85 | 3.15 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 20.27 | 0.00 | 2.134 | 7.49 | 0.35 | 2.1 | 97.9 | 0.0 | 0.58 | 0.52 | 0.93 | 0.88 | 2.73 | 20080 | 1989 | 13 | 212 | 4 | 0 | 0 | logfile |
✔ | 7ECW | 31059 | 2023-02-24 | 2021-03-13 | 3.1 | 3.18 | — | 3.2 | 0.007 | 0.89 | 1.0 | 0.06 | 16.81 | 0.01 | 1.950 | 7.43 | 1.10 | 6.1 | 93.8 | 0.1 | -3.73 | 0.75 | 0.82 | 2.64 | 3.2 | 0.002 | 0.54 | 0.0 | 0.04 | 17.52 | 0.00 | 2.221 | 6.10 | 0.14 | 5.2 | 94.8 | 0.0 | -0.27 | 1.22 | 0.76 | 0.84 | 2.08 | 23089 | 2934 | 13 | 70 | 0 | 0 | 0 | logfile |
✔ | 7VG3 | 31964 | 2023-02-18 | 2021-09-14 | 3.73 | 3.86 | — | 3.8 | 0.006 | 1.15 | 2.0 | 0.06 | 12.99 | 0.01 | 1.935 | 7.51 | 5.13 | 10.8 | 88.7 | 0.6 | -4.51 | 0.80 | 0.84 | 3.10 | 3.8 | 0.002 | 0.66 | 0.0 | 0.04 | 14.45 | 0.00 | 2.219 | 10.08 | 0.26 | 8.0 | 92.0 | 0.0 | -1.23 | 1.07 | 0.79 | 0.83 | 1.81 | 8118 | 860 | 4 | 62 | 3 | 0 | 0 | logfile |
✔ | 6oFF | 20044 | 2023-02-19 | 2019-03-29 | 3.2 | 3.32 | — | 3.3 | 0.009 | 0.83 | 0.0 | 0.04 | 10.88 | 0.01 | 2.147 | 4.73 | 0.00 | 3.9 | 96.1 | 0.0 | -5.21 | 0.59 | 0.85 | 4.52 | 3.3 | 0.002 | 0.53 | 0.0 | 0.03 | 15.58 | 0.00 | 2.230 | 6.89 | 0.25 | 3.8 | 96.2 | 0.0 | 4.04 | 1.22 | 0.62 | 0.88 | 3.84 | 11016 | 1404 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NPS | 12518 | 2023-02-22 | 2021-02-28 | 3.81 | 3.93 | 3.82 | 3.9 | 0.010 | 1.15 | 6.0 | 0.08 | 11.02 | 0.01 | 2.182 | 1.23 | 0.00 | 2.5 | 97.5 | 0.0 | -1.44 | 0.82 | 0.82 | 2.59 | 3.9 | 0.002 | 0.59 | 0.0 | 0.05 | 12.84 | 0.00 | 1.895 | 2.89 | 0.00 | 1.8 | 98.2 | 0.0 | -0.02 | 0.68 | 0.83 | 0.83 | 2.26 | 55350 | 3732 | 9 | 0 | 0 | 0 | 27681 | logfile |
✔ | 6V1i | 21012 | 2023-02-19 | 2019-11-20 | 3.8 | 4.10 | 3.68 | 3.8 | 0.007 | 0.90 | 0.0 | 0.04 | 9.43 | 0.01 | 2.433 | 1.82 | 0.00 | 1.5 | 98.5 | 0.0 | -3.88 | 0.93 | 0.89 | 1.99 | 3.8 | 0.002 | 0.65 | 0.0 | 0.04 | 14.31 | 0.00 | 2.170 | 7.01 | 0.00 | 1.5 | 98.5 | 0.0 | 4.93 | 0.83 | 0.93 | 0.89 | 1.26 | 9711 | 1233 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D9K | 27264 | 2023-02-17 | 2022-06-10 | 3.72 | 4.58 | 3.85 | 4.1 | 0.001 | 0.37 | 0.0 | 0.03 | 9.12 | 0.00 | 2.270 | 6.37 | 0.64 | 1.9 | 98.1 | 0.0 | 1.53 | 0.89 | 0.84 | 2.42 | 4.1 | 0.002 | 0.50 | 0.0 | 0.04 | 11.60 | 0.00 | 2.170 | 10.39 | 0.00 | 2.6 | 97.4 | 0.0 | 0.62 | 0.58 | 0.90 | 0.85 | 2.17 | 5708 | 546 | 3 | 65 | 0 | 0 | 0 | logfile |
✔ | 6oAY | 20005 | 2023-02-26 | 2019-03-18 | 3.3 | 3.38 | — | 3.3 | 0.012 | 1.19 | 0.0 | 0.07 | 17.27 | 0.01 | 1.815 | 17.99 | 1.36 | 9.9 | 89.6 | 0.5 | -5.50 | 0.72 | 0.77 | 2.04 | 3.3 | 0.002 | 0.69 | 0.0 | 0.04 | 18.05 | 0.00 | 2.124 | 16.15 | 0.66 | 5.9 | 94.0 | 0.1 | -2.13 | 1.25 | 0.73 | 0.79 | 1.44 | 27261 | 3386 | 13 | 0 | 37 | 0 | 0 | logfile |
✔ | 7EKi | 31168 | 2023-02-21 | 2021-04-05 | 3.18 | 3.70 | — | 3.6 | 0.005 | 0.61 | 0.0 | 0.06 | 12.25 | 0.00 | 2.230 | 5.79 | 0.88 | 5.3 | 94.7 | 0.0 | -1.88 | 0.69 | 0.81 | 2.83 | 3.6 | 0.002 | 0.53 | 0.0 | 0.04 | 13.80 | 0.00 | 2.183 | 5.16 | 0.18 | 5.1 | 94.9 | 0.0 | -0.53 | 0.39 | 0.70 | 0.82 | 2.46 | 16005 | 1975 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 5BKJ | 9406 | 2023-02-22 | 2021-03-19 | 3.5 | 3.68 | — | 3.7 | 0.006 | 0.81 | 0.0 | 0.06 | 14.99 | 0.00 | 2.251 | 4.94 | 1.09 | 4.1 | 95.9 | 0.0 | -3.93 | 0.69 | 0.84 | 2.13 | 3.7 | 0.002 | 0.52 | 0.0 | 0.05 | 16.34 | 0.00 | 2.242 | 7.50 | 0.33 | 2.0 | 98.0 | 0.0 | 0.25 | 1.63 | 0.69 | 0.83 | 1.97 | 16939 | 2156 | 16 | 0 | 7 | 4 | 0 | logfile |
✔ | 6o7i | 0642 | 2023-02-23 | 2019-03-07 | 3.2 | 3.32 | — | 3.3 | 0.012 | 1.17 | 0.0 | 0.07 | 12.13 | 0.01 | 2.131 | 7.58 | 1.03 | 8.2 | 91.8 | 0.0 | -4.50 | 0.71 | 0.77 | 3.69 | 3.3 | 0.002 | 0.63 | 0.0 | 0.04 | 15.02 | 0.00 | 2.119 | 9.43 | 0.31 | 4.8 | 95.2 | 0.0 | -0.98 | 1.72 | 0.74 | 0.83 | 2.58 | 20276 | 2377 | 15 | 49 | 97 | 0 | 0 | logfile |
✔ | 6K9L | 9950 | 2023-02-27 | 2019-06-16 | 4.27 | 4.50 | — | 4.2 | 0.001 | 0.49 | 0.0 | 0.04 | 9.31 | 0.00 | 2.240 | 4.75 | 4.95 | 4.6 | 95.4 | 0.0 | -3.11 | 0.84 | 0.71 | — | 4.2 | 0.002 | 0.68 | 0.0 | 0.04 | 9.69 | 0.00 | 2.113 | 12.20 | 0.00 | 7.1 | 92.9 | 0.0 | 0.72 | 1.80 | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U6V | 26381 | 2023-02-21 | 2022-03-06 | 4.1 | 3.17 | 4.21 | 6.8 | 0.002 | 0.52 | 0.0 | 0.04 | 13.79 | 0.00 | 1.948 | 13.74 | 1.57 | 4.7 | 95.3 | 0.0 | -0.16 | 0.64 | 0.29 | — | 6.8 | 0.002 | 0.50 | 0.0 | 0.04 | 13.89 | 0.00 | 1.956 | 14.57 | 1.75 | 6.1 | 93.9 | 0.0 | -0.54 | 0.42 | 0.82 | 0.72 | — | 9997 | 637 | 14 | 0 | 0 | 23 | 4901 | logfile |
✔ | 6GKM | 0024 | 2023-02-19 | 2018-05-21 | 3.87 | 4.07 | 2.00 | 4.0 | 0.007 | 0.98 | 0.0 | 0.05 | 10.31 | 0.00 | 2.134 | 11.37 | 0.16 | 9.7 | 90.2 | 0.1 | -3.66 | 0.63 | 0.81 | 2.22 | 4.0 | 0.002 | 0.71 | 0.0 | 0.04 | 13.76 | 0.00 | 2.109 | 20.52 | 0.16 | 7.9 | 92.1 | 0.0 | -0.09 | 1.48 | 0.62 | 0.82 | 2.34 | 10562 | 689 | 4 | 28 | 2 | 0 | 4402 | logfile |