Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6E9E	9013	2021-08-07	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	10.72	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.5	0.002	0.53	0.0	0.03	13.94	0.00	2.255	5.77	0.00	1.6	98.4	0.0	0.84	1.13	0.78	0.88	3.33	8163	863	3	51	1	0	0	logfile
✔	6oT5	20194	2021-08-10	2019-05-02	3.6	3.71	3.54	3.7	0.009	0.85	0.0	0.05	9.27	0.00	1.623	6.48	0.00	3.0	97.0	0.0	-2.73	0.65	0.76	3.18	3.7	0.002	0.50	0.0	0.03	13.68	0.00	2.002	5.86	0.28	3.9	96.1	0.0	0.74	0.86	0.68	0.78	2.60	33420	2444	8	0	52	0	15620	logfile
✔	6JNC	9847	2021-08-07	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.18	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.002	0.55	0.0	0.04	15.76	0.00	2.292	4.85	0.29	2.4	97.6	0.0	-0.33	1.23	0.51	0.88	2.30	3294	419	1	0	1	0	0	logfile
✔	6oKU	20105	2021-08-09	2019-04-15	3.8	4.02	—	3.9	0.007	1.01	0.0	0.06	15.78	0.01	2.202	7.27	2.97	11.7	88.3	0.0	-4.09	0.75	0.83	1.28	3.9	0.002	0.62	0.0	0.04	16.26	0.00	2.134	9.28	0.16	7.2	92.8	0.0	-2.05	1.56	0.75	0.83	1.32	27048	3451	7	0	0	0	0	logfile
✔	6PQP	20450	2021-08-09	2019-07-09	3.06	3.46	3.03	3.4	0.011	1.55	0.0	0.22	16.90	0.01	2.132	8.75	0.19	4.3	95.7	0.0	-3.28	0.74	0.82	3.00	3.4	0.002	0.57	0.0	0.04	16.08	0.00	2.099	6.09	0.43	2.6	97.4	0.0	2.17	2.28	0.76	0.86	1.92	20492	2460	8	0	36	0	0	logfile
✔	5U6o	8511	2021-08-08	2016-12-08	3.5	3.58	—	3.5	0.008	1.44	0.0	0.08	11.34	0.01	2.380	2.59	0.00	4.6	95.4	0.0	1.02	0.54	0.66	2.98	3.5	0.002	0.62	0.0	0.04	14.97	0.00	2.181	10.74	0.45	2.0	98.0	0.0	2.31	0.68	0.68	0.82	1.92	14480	1928	4	0	0	0	0	logfile
✔	6GYN	0093	2021-08-08	2018-06-30	3.4	3.66	3.52	3.6	0.008	0.85	0.0	0.05	9.32	0.01	2.273	3.08	0.00	4.7	95.3	0.0	-2.56	0.66	0.83	3.51	3.6	0.002	0.55	0.0	0.04	13.02	0.00	2.246	7.11	0.35	2.5	97.5	0.0	2.62	1.96	0.67	0.84	1.74	16932	1980	8	0	36	0	0	logfile
✔	6UGD	20761	2021-08-08	2019-09-26	3.5	3.93	—	3.8	0.006	1.00	0.0	0.05	14.47	0.01	2.082	3.49	0.23	7.4	92.5	0.1	-4.95	0.65	0.69	1.81	3.8	0.002	0.51	0.0	0.04	16.01	0.00	2.051	4.99	0.00	4.0	96.0	0.0	-1.05	1.58	0.72	0.82	1.21	13928	1865	13	0	11	0	0	logfile
✔	6SXo	10344	2021-08-08	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.002	0.58	0.0	0.03	16.68	0.00	2.130	10.38	0.70	3.6	96.4	0.0	-1.04	0.76	0.27	0.77	2.05	14894	973	8	326	0	0	0	logfile
✔	6V9Z	21132	2021-08-08	2019-12-16	3.35	4.22	3.56	3.9	0.014	1.88	0.0	0.09	14.27	0.00	2.382	3.65	2.97	5.1	94.9	0.0	-2.85	0.74	0.80	1.47	3.9	0.002	0.58	0.0	0.04	15.33	0.00	2.256	6.49	0.16	2.9	97.1	0.0	2.39	2.01	0.77	0.86	1.50	11434	1472	4	0	0	0	0	logfile
✔	6PKW	20368	2021-08-09	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.06	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.002	0.56	0.0	0.04	9.88	0.00	2.158	6.69	0.00	4.7	95.3	0.0	2.19	1.66	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile
✔	6P07	20226	2021-08-08	2019-05-16	3.2	3.73	3.35	3.7	0.008	1.09	0.0	0.05	9.29	0.01	1.998	3.65	0.00	6.1	93.9	0.0	-3.52	0.74	0.79	3.57	3.7	0.002	0.59	0.0	0.04	13.90	0.00	2.059	8.27	0.13	4.3	95.7	0.0	0.60	1.76	0.77	0.83	1.96	14072	1795	13	0	13	0	0	logfile
✔	6R8B	4754	2021-08-09	2019-04-01	3.1	3.54	—	3.5	0.012	1.34	4.0	0.07	14.76	0.01	2.211	7.62	3.12	4.0	95.7	0.2	-3.32	0.45	0.56	3.49	3.5	0.002	0.55	0.0	0.04	15.88	0.00	2.171	6.40	0.57	4.1	95.9	0.0	-0.18	1.22	0.64	0.78	3.32	26052	1688	8	0	4	0	12788	logfile
✔	6VAK	21141	2021-08-09	2019-12-17	3.48	3.85	—	3.8	0.004	0.77	0.0	0.04	14.36	0.00	2.047	7.08	2.96	8.2	91.8	0.0	-2.80	0.73	0.80	3.28	3.8	0.002	0.59	0.0	0.03	16.56	0.00	2.170	5.92	0.36	5.7	94.2	0.0	2.54	0.59	0.72	0.83	2.68	22781	2992	11	0	0	0	0	logfile
✔	6N2P	9332	2021-08-08	2018-11-13	4.0	4.78	—	4.2	0.009	0.87	0.0	0.04	7.86	0.01	2.203	7.41	0.00	12.8	87.2	0.0	-4.67	0.58	0.72	—	4.2	0.002	0.60	0.0	0.04	11.00	0.00	2.186	6.18	0.00	7.3	92.7	0.0	0.72	1.42	0.60	0.82	—	14570	880	10	0	0	0	7380	logfile
✔	6T9N	10418	2021-08-08	2019-10-28	2.96	3.07	2.95	3.0	0.020	1.19	0.0	0.30	11.73	0.01	2.216	3.83	0.00	3.2	96.4	0.4	-3.35	0.71	0.88	4.95	3.1	0.002	0.77	0.0	0.09	15.16	0.00	2.193	11.15	1.31	1.8	98.0	0.2	1.59	1.53	0.70	0.88	3.97	16917	1920	8	0	53	0	0	logfile
✔	6RVR	10010	2021-08-11	2019-05-31	3.46	3.63	—	3.5	0.008	0.75	0.0	0.05	14.89	0.00	2.082	8.14	0.57	10.3	89.7	0.0	-4.34	0.81	0.85	2.30	3.5	0.002	0.59	0.0	0.04	16.01	0.00	2.165	6.83	0.38	6.1	93.9	0.0	-0.73	0.46	0.80	0.84	1.76	37716	4680	12	0	0	0	0	logfile
✔	6UGF	20763	2021-08-08	2019-09-26	4.2	4.51	—	4.2	0.008	1.11	0.0	0.05	13.93	0.01	2.046	4.71	0.30	6.0	93.9	0.1	-4.55	0.80	0.72	—	4.3	0.002	0.59	0.0	0.04	13.31	0.00	2.051	7.18	0.00	4.1	95.9	0.0	-0.23	0.68	0.84	0.81	—	13874	1862	12	0	9	0	0	logfile
✔	6PUU	20482	2021-08-11	2019-07-18	3.7	4.09	—	3.7	0.006	1.08	0.0	0.05	14.45	0.01	2.302	4.98	1.13	5.4	94.4	0.2	-3.50	0.75	0.83	1.62	3.7	0.002	0.65	0.0	0.04	14.95	0.00	2.192	6.74	0.09	5.0	95.0	0.1	0.41	0.50	0.75	0.84	1.21	38492	5236	8	0	8	0	0	logfile
✔	6PUS	20480	2021-08-11	2019-07-18	3.7	4.57	—	3.8	0.011	1.14	0.0	0.06	14.53	0.01	2.208	8.80	1.64	7.9	91.6	0.5	-3.61	0.75	0.84	1.56	3.8	0.002	0.60	0.0	0.04	14.57	0.00	2.162	9.50	0.35	6.0	93.9	0.1	0.16	0.42	0.75	0.84	1.56	37380	5224	8	0	12	0	0	logfile

• Page 1 of 276
• next →