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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7R5o | 14332 | 2022-07-07 | 2022-02-11 | 1.58 | 1.60 | 1.62 | 1.6 | 0.020 | 2.16 | 73.0 | 0.21 | 13.63 | 0.01 | 1.924 | 5.51 | 0.62 | 1.2 | 98.8 | 0.0 | 1.54 | 0.84 | 0.91 | 8.10 | 1.6 | 0.002 | 0.57 | 0.0 | 0.04 | 14.14 | 0.00 | 2.142 | 2.12 | 0.00 | 1.8 | 98.2 | 0.0 | 5.16 | 0.31 | 0.87 | 0.91 | 8.29 | 38520 | 4152 | 72 | 0 | 24 | 3384 | 0 | logfile |
✔ | 6RTC | 4997 | 2022-07-04 | 2019-05-23 | 3.96 | 4.05 | 3.97 | 4.0 | 0.007 | 0.91 | 0.0 | 0.05 | 14.96 | 0.01 | 2.295 | 1.19 | 0.00 | 3.9 | 96.1 | 0.0 | -3.83 | 0.68 | 0.80 | 1.58 | 4.0 | 0.002 | 0.58 | 0.0 | 0.04 | 16.14 | 0.00 | 2.258 | 6.56 | 0.10 | 4.6 | 95.4 | 0.0 | 0.77 | 0.62 | 0.68 | 0.81 | 1.63 | 19374 | 1242 | 2 | 0 | 0 | 0 | 9804 | logfile |
✔ | 7V4i | 31712 | 2022-07-05 | 2021-08-13 | 3.3 | 3.91 | — | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 14.20 | 0.01 | 2.079 | 10.56 | 0.00 | 5.5 | 94.5 | 0.0 | -1.15 | 0.70 | 0.74 | 1.97 | 3.9 | 0.002 | 0.59 | 0.0 | 0.04 | 15.95 | 0.01 | 2.093 | 11.00 | 0.10 | 4.5 | 95.5 | 0.0 | -0.85 | 0.38 | 0.72 | 0.76 | 1.51 | 27680 | 3560 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F1o | 31421 | 2022-07-03 | 2021-06-09 | 3.13 | 3.74 | — | 3.7 | 0.011 | 1.08 | 3.0 | 0.08 | 15.20 | 0.01 | 2.086 | 11.95 | 1.81 | 4.0 | 96.0 | 0.0 | -2.35 | 0.63 | 0.77 | 2.10 | 3.7 | 0.002 | 0.60 | 0.0 | 0.04 | 16.00 | 0.00 | 2.137 | 9.44 | 0.56 | 2.0 | 98.0 | 0.0 | 0.84 | 0.53 | 0.62 | 0.77 | 2.23 | 8208 | 1035 | 7 | 1 | 2 | 0 | 0 | logfile |
✔ | 6TYi | 20583 | 2022-07-03 | 2019-08-09 | 3.3 | 3.55 | — | 3.5 | 0.012 | 1.03 | 0.0 | 0.05 | 15.89 | 0.00 | 1.796 | 11.37 | 0.43 | 4.8 | 95.1 | 0.1 | -0.84 | 0.70 | 0.81 | 1.90 | 3.5 | 0.002 | 0.52 | 0.0 | 0.03 | 17.16 | 0.00 | 2.221 | 6.27 | 0.11 | 2.8 | 97.2 | 0.0 | 3.28 | 1.18 | 0.71 | 0.82 | 1.28 | 9184 | 1186 | 11 | 0 | 4 | 0 | 0 | logfile |
✔ | 6SYT | 10347 | 2022-07-04 | 2019-10-01 | 3.45 | 3.54 | — | 3.5 | 0.018 | 1.23 | 0.0 | 0.16 | 9.36 | 0.01 | 1.903 | 3.04 | 0.13 | 7.5 | 92.4 | 0.1 | -5.37 | 0.69 | 0.81 | 4.11 | 3.5 | 0.002 | 0.60 | 0.0 | 0.04 | 13.79 | 0.00 | 2.060 | 5.10 | 0.25 | 3.1 | 96.9 | 0.0 | 1.00 | 0.64 | 0.71 | 0.84 | 2.38 | 18369 | 2369 | 5 | 0 | 216 | 0 | 0 | logfile |
✔ | 7VNM | 32042 | 2022-07-04 | 2021-10-11 | 2.86 | 2.50 | — | 2.7 | 0.021 | 1.92 | 0.0 | 0.04 | 16.44 | 0.05 | 2.100 | 8.61 | 0.34 | 1.5 | 98.5 | 0.0 | 2.54 | 0.63 | 0.86 | 4.06 | 2.6 | 0.002 | 0.65 | 0.0 | 0.04 | 17.12 | 0.00 | 2.156 | 7.59 | 1.36 | 1.3 | 98.7 | 0.0 | 2.77 | 0.94 | 0.62 | 0.87 | 3.93 | 20588 | 2112 | 55 | 0 | 65 | 0 | 0 | logfile |
✔ | 7RXA | 24726 | 2022-07-03 | 2021-08-22 | 3.08 | 3.22 | — | 3.3 | 0.006 | 1.11 | 0.0 | 0.05 | 15.07 | 0.01 | 2.381 | 1.32 | 0.00 | 5.4 | 94.6 | 0.0 | -4.42 | 0.67 | 0.84 | 2.99 | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 13.77 | 0.00 | 2.241 | 2.87 | 0.14 | 4.1 | 95.9 | 0.0 | 0.82 | 0.32 | 0.67 | 0.85 | 2.84 | 8694 | 1156 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 7WUG | 32830 | 2022-07-04 | 2022-02-08 | 3.3 | 3.43 | — | 3.4 | 0.004 | 0.69 | 0.0 | 0.05 | 13.45 | 0.00 | 2.231 | 3.22 | 0.11 | 4.1 | 95.8 | 0.0 | -0.52 | 0.79 | 0.86 | 2.55 | 3.4 | 0.002 | 0.50 | 0.0 | 0.04 | 14.90 | 0.00 | 2.167 | 5.37 | 0.22 | 3.2 | 96.8 | 0.0 | 1.47 | 0.28 | 0.78 | 0.87 | 1.90 | 17515 | 2239 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MVU | 24056 | 2022-07-05 | 2021-05-15 | 3.77 | 4.87 | 3.73 | 4.0 | 0.002 | 0.36 | 0.0 | 0.03 | 6.38 | 0.00 | 2.187 | 3.55 | 0.00 | 1.1 | 98.9 | 0.0 | -0.33 | 0.85 | 0.73 | 0.19 | 4.0 | 0.002 | 0.58 | 0.0 | 0.03 | 11.75 | 0.00 | 1.907 | 11.81 | 0.07 | 3.4 | 96.6 | 0.0 | 2.54 | 2.06 | 0.88 | 0.82 | 0.38 | 25645 | 1604 | 2 | 0 | 0 | 0 | 12841 | logfile |
✔ | 7W0E | 32240 | 2022-07-04 | 2021-11-18 | 4.03 | 3.95 | — | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 13.97 | 0.00 | 2.094 | 14.02 | 0.00 | 4.8 | 95.1 | 0.1 | -0.82 | 0.86 | 0.75 | — | 3.8 | 0.002 | 0.58 | 0.0 | 0.04 | 14.00 | 0.00 | 2.062 | 12.63 | 0.07 | 4.5 | 95.5 | 0.1 | -0.59 | 0.38 | 0.86 | 0.75 | — | 14850 | 1557 | 5 | 105 | 4 | 0 | 0 | logfile |
✔ | 7oAE | 12775 | 2022-07-03 | 2021-04-19 | 2.0 | 2.65 | — | 2.2 | 0.008 | 0.53 | 0.0 | 0.05 | 9.44 | 0.00 | 2.440 | 0.99 | 0.00 | 2.6 | 97.4 | 0.0 | 0.22 | 0.77 | 0.91 | 6.46 | 2.2 | 0.002 | 0.52 | 0.0 | 0.04 | 15.06 | 0.00 | 2.223 | 5.99 | 0.38 | 1.8 | 98.2 | 0.0 | 0.44 | 2.53 | 0.78 | 0.92 | 6.31 | 12768 | 1680 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JB6 | 6408 | 2022-07-04 | 2015-08-02 | 3.3 | 3.35 | — | 3.4 | 0.010 | 0.90 | 4.0 | 0.06 | 9.55 | 0.01 | 2.123 | 8.54 | 0.20 | 2.4 | 97.4 | 0.1 | -3.72 | 0.63 | 0.90 | 5.02 | 3.4 | 0.002 | 0.58 | 0.0 | 0.04 | 15.06 | 0.00 | 2.157 | 5.94 | 0.20 | 1.8 | 98.2 | 0.0 | 0.16 | 1.19 | 0.63 | 0.88 | 3.71 | 13904 | 1731 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6V5V | 21054 | 2022-07-02 | 2019-12-04 | 3.8 | 4.01 | — | 3.9 | 0.003 | 0.51 | 0.0 | 0.04 | 13.58 | 0.00 | 2.212 | 6.41 | 0.00 | 4.6 | 95.4 | 0.0 | -2.04 | 0.52 | 0.83 | 2.06 | 3.9 | 0.002 | 0.54 | 0.0 | 0.04 | 14.64 | 0.00 | 2.192 | 8.26 | 0.30 | 3.2 | 96.8 | 0.0 | 0.28 | 0.57 | 0.53 | 0.82 | 1.76 | 2979 | 369 | 1 | 1 | 0 | 0 | 0 | logfile |
✔ | 7T37 | 25650 | 2022-07-04 | 2021-12-07 | 3.7 | 4.02 | — | 4.0 | 0.007 | 0.85 | 0.0 | 0.05 | 13.07 | 0.01 | 2.247 | 4.17 | 0.00 | 3.8 | 96.2 | 0.0 | -1.43 | 0.69 | 0.82 | 2.15 | 4.0 | 0.002 | 0.51 | 0.0 | 0.03 | 14.10 | 0.00 | 2.291 | 6.52 | 0.00 | 2.8 | 97.2 | 0.0 | 1.29 | 0.29 | 0.68 | 0.82 | 1.94 | 20176 | 2476 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7T38 | 25651 | 2022-07-04 | 2021-12-07 | 3.8 | 4.03 | — | 4.0 | 0.004 | 0.78 | 0.0 | 0.04 | 13.60 | 0.01 | 2.319 | 4.29 | 0.39 | 3.1 | 96.9 | 0.0 | -1.24 | 0.68 | 0.81 | 1.54 | 4.0 | 0.002 | 0.53 | 0.0 | 0.03 | 15.47 | 0.00 | 2.252 | 5.73 | 0.24 | 3.8 | 96.2 | 0.0 | 1.61 | 1.56 | 0.70 | 0.82 | 1.30 | 19404 | 2432 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P37 | 13178 | 2022-07-04 | 2021-07-07 | 2.96 | 3.18 | 3.03 | 3.2 | 0.005 | 0.85 | 0.0 | 0.05 | 11.41 | 0.00 | 2.280 | 7.21 | 0.00 | 2.4 | 97.6 | 0.0 | 1.79 | 0.68 | 0.76 | 2.89 | 3.2 | 0.002 | 0.51 | 0.0 | 0.04 | 15.41 | 0.00 | 2.174 | 9.77 | 2.05 | 2.8 | 97.2 | 0.0 | 1.54 | 0.92 | 0.71 | 0.81 | 3.09 | 14496 | 1764 | 24 | 0 | 36 | 0 | 0 | logfile |
✔ | 7RXB | 24727 | 2022-07-03 | 2021-08-22 | 3.07 | 3.22 | — | 3.2 | 0.009 | 1.15 | 0.0 | 0.05 | 14.60 | 0.01 | 2.437 | 0.72 | 0.00 | 6.0 | 94.0 | 0.0 | -4.88 | 0.67 | 0.89 | 3.48 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 14.50 | 0.00 | 2.378 | 2.10 | 0.25 | 5.3 | 94.7 | 0.0 | -0.04 | 0.27 | 0.65 | 0.89 | 3.11 | 8506 | 1096 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 6HYP | 0309 | 2022-07-03 | 2018-10-22 | 4.4 | 4.53 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.05 | 8.72 | 0.00 | 1.943 | 1.67 | 0.34 | 7.3 | 92.2 | 0.4 | -5.99 | 0.75 | 0.69 | — | 4.4 | 0.002 | 0.67 | 0.0 | 0.04 | 8.23 | 0.00 | 2.173 | 3.43 | 0.00 | 7.0 | 92.9 | 0.1 | -1.16 | 0.61 | 0.76 | 0.73 | — | 12392 | 2082 | 1 | 0 | 192 | 0 | 0 | logfile |
✔ | 6VVo | 21405 | 2022-07-05 | 2020-02-18 | 3.4 | 3.45 | — | 3.3 | 0.008 | 0.82 | 0.0 | 0.05 | 14.00 | 0.00 | 1.915 | 9.86 | 0.41 | 4.7 | 95.2 | 0.1 | -2.93 | 0.89 | 0.86 | 2.75 | 3.3 | 0.002 | 0.54 | 0.0 | 0.04 | 15.19 | 0.00 | 1.979 | 7.08 | 0.27 | 3.1 | 96.9 | 0.0 | 0.71 | 1.15 | 0.90 | 0.88 | 2.49 | 19668 | 2493 | 13 | 0 | 9 | 0 | 0 | logfile |