Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6T0R	10357	2021-05-04	2019-10-03	2.82	2.90	2.91	2.9	0.005	0.66	0.0	0.05	13.99	0.01	2.279	4.08	4.99	3.5	96.5	0.0	-2.98	0.69	0.85	3.55	2.9	0.002	0.52	0.0	0.04	16.58	0.00	2.121	8.09	2.93	2.7	97.3	0.0	0.63	1.03	0.70	0.86	2.94	14120	1690	7	20	0	31	0	logfile
✔	7C2K	30275	2021-05-04	2020-05-07	2.93	3.24	3.00	3.1	0.007	0.68	0.0	0.04	13.79	0.00	2.256	7.20	0.00	4.5	95.5	0.0	-2.91	0.78	0.89	4.22	3.1	0.002	0.50	0.0	0.04	15.26	0.00	2.219	5.95	1.27	3.9	96.1	0.0	-0.33	0.44	0.74	0.88	3.84	10692	1256	7	31	3	0	0	logfile
✔	7JK4	22361	2021-05-05	2020-07-27	3.4	3.91	3.45	3.6	0.006	0.95	0.0	0.05	17.55	0.01	2.102	4.61	0.32	4.1	95.9	0.0	-2.88	0.87	0.88	2.64	3.6	0.002	0.55	0.0	0.04	18.01	0.00	2.085	7.37	0.00	2.2	97.8	0.0	1.86	1.04	0.88	0.89	1.95	21717	2531	13	68	8	0	0	logfile
✔	7JPR	22420	2021-05-04	2020-08-09	4.0	4.90	—	3.3	0.006	1.20	0.0	0.06	15.00	0.01	2.048	5.46	0.00	3.6	96.4	0.0	-2.74	0.82	0.68	—	3.6	0.002	0.71	0.0	0.04	16.71	0.00	2.065	12.17	0.21	3.0	97.0	0.0	0.75	1.89	0.86	0.75	—	16737	2045	8	0	6	0	0	logfile
✔	6T0U	10359	2021-05-04	2019-10-03	3.12	3.20	3.13	3.2	0.005	0.69	0.0	0.05	14.30	0.01	2.273	3.95	5.25	3.4	96.6	0.0	-3.41	0.68	0.86	3.55	3.2	0.002	0.50	0.0	0.04	15.69	0.00	2.132	7.69	0.33	3.2	96.8	0.0	0.55	0.59	0.68	0.86	3.00	14176	1695	4	23	0	0	0	logfile
✔	7JGF	22325	2021-05-03	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.40	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.50	0.0	0.04	13.46	0.00	2.074	52.91	0.41	6.3	93.7	0.0	0.95	0.80	0.42	0.47	—	4477	532	1	0	0	0	30	logfile
✔	6UW4	20917	2021-05-04	2019-11-04	3.1	3.24	—	3.2	0.010	0.97	0.0	0.06	17.92	0.01	2.280	3.97	0.00	5.8	94.2	0.0	-4.45	0.72	0.84	1.94	3.2	0.002	0.56	0.0	0.04	16.57	0.00	2.179	6.32	0.23	5.5	94.5	0.0	0.21	0.48	0.71	0.84	1.22	20281	2412	8	0	21	0	0	logfile
✔	7JK2	22359	2021-05-05	2020-07-27	3.2	3.80	3.18	3.4	0.006	0.92	0.0	0.05	17.56	0.01	2.092	4.03	0.23	3.5	96.5	0.0	-3.50	0.85	0.86	2.35	3.4	0.002	0.58	0.0	0.04	17.76	0.00	2.039	7.17	0.05	2.8	97.2	0.0	1.72	1.07	0.85	0.87	1.79	21619	2523	13	66	8	0	0	logfile
✔	6X2B	22000	2021-05-04	2020-05-20	3.6	4.27	3.73	3.9	0.012	1.74	2.0	0.09	13.17	0.01	2.530	0.32	2.08	6.7	92.9	0.4	-1.72	0.77	0.76	2.50	3.9	0.002	0.58	0.0	0.04	13.29	0.00	2.183	5.99	0.14	3.3	96.6	0.0	0.52	0.55	0.83	0.82	2.01	21120	2861	3	0	0	0	0	logfile
✔	6WB2	21585	2021-05-03	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.65	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.53	0.0	0.04	11.45	0.00	2.201	10.46	0.17	3.8	96.2	0.0	-0.04	0.66	0.87	0.82	—	8407	946	4	75	0	0	0	logfile
✔	6T0N	10356	2021-05-04	2019-10-03	2.54	2.64	2.56	2.6	0.005	0.69	0.0	0.05	14.69	0.01	2.105	3.18	4.90	4.3	95.4	0.2	-2.43	0.73	0.88	4.53	2.6	0.002	0.52	0.0	0.04	16.71	0.00	2.086	6.82	1.59	1.5	98.5	0.0	1.29	0.55	0.73	0.89	4.26	14598	1703	12	29	2	268	0	logfile
✔	6VTT	21383	2021-05-04	2020-02-13	3.7	4.22	3.79	4.0	0.004	0.64	3.0	0.05	10.83	0.01	2.214	6.18	0.00	4.6	95.4	0.0	-4.61	0.82	0.82	2.05	4.0	0.002	0.56	0.0	0.04	13.38	0.00	2.160	8.23	0.18	4.3	95.7	0.0	-1.82	0.49	0.82	0.82	1.85	16607	1928	36	0	103	0	0	logfile
✔	6M02	30028	2021-05-04	2020-02-19	3.2	3.49	3.90	3.9	0.006	0.96	0.0	0.05	16.46	0.01	2.263	6.38	1.64	7.0	93.0	0.0	-6.29	0.60	0.70	1.57	3.9	0.002	0.67	0.0	0.04	17.31	0.00	2.295	8.96	0.33	3.5	96.5	0.0	-1.69	1.19	0.60	0.70	1.22	18935	2345	7	0	0	0	0	logfile
✔	6LVB	0988	2021-05-05	2020-02-02	2.8	2.90	2.76	2.9	0.008	0.90	0.0	0.06	9.15	0.01	1.914	2.94	0.27	4.6	95.4	0.0	-2.88	0.80	0.89	6.02	2.8	0.002	0.53	0.0	0.04	14.37	0.00	1.986	5.23	1.30	3.5	96.5	0.0	-0.04	1.20	0.81	0.89	4.61	28276	3544	16	0	4	4	0	logfile
✔	7JJP	22358	2021-05-06	2020-07-27	1.94	2.15	2.08	2.1	0.011	1.21	0.0	0.07	14.56	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.002	0.54	0.0	0.04	14.98	0.00	2.108	7.63	0.61	0.9	99.1	0.0	3.79	0.93	0.71	0.86	4.90	40920	2352	36	0	180	396	19104	logfile
✔	6NTS	0510	2021-05-03	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.28	0.00	1.917	1.91	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.41	0.00	1.738	7.03	0.00	2.5	97.5	0.0	0.88	2.54	0.92	0.84	1.32	9956	1240	5	0	3	0	0	logfile
✔	6TQE	10549	2021-05-03	2019-12-16	4.3	4.14	—	4.2	0.007	1.04	0.0	0.06	14.59	0.01	2.077	2.78	0.76	8.6	91.4	0.0	-6.13	0.76	0.89	—	4.2	0.002	0.61	0.0	0.04	13.60	0.00	2.026	4.71	0.00	3.6	96.4	0.0	-2.69	1.28	0.75	0.88	—	10076	1268	4	0	4	0	0	logfile
✔	6UBS	20714	2021-05-04	2019-09-12	3.33	3.89	3.31	3.6	0.004	0.82	0.0	0.05	15.74	0.01	2.194	5.31	1.22	4.2	95.8	0.0	-4.10	0.81	0.81	1.71	3.6	0.002	0.61	0.0	0.04	15.76	0.00	2.187	8.99	0.24	4.5	95.5	0.0	0.17	0.79	0.83	0.85	2.30	15270	1810	15	0	25	0	0	logfile
✔	7JM9	22390	2021-05-06	2020-07-31	2.5	2.71	2.66	2.7	0.007	0.82	0.0	0.07	13.86	0.00	2.291	3.08	0.56	1.1	98.9	0.0	0.10	0.62	0.82	5.25	2.7	0.002	0.51	0.0	0.04	14.35	0.00	2.075	9.21	1.41	1.3	98.7	0.0	3.65	0.75	0.63	0.84	4.54	41136	2328	36	0	168	156	18876	logfile
✔	7JLW	22382	2021-05-06	2020-07-30	2.5	2.52	2.49	2.5	0.009	1.07	0.0	0.07	15.05	0.00	2.377	3.99	1.14	1.1	98.9	0.0	0.51	0.62	0.82	4.64	2.5	0.002	0.49	0.0	0.04	15.54	0.00	2.070	6.97	1.28	0.8	99.2	0.0	3.29	0.77	0.63	0.84	4.08	40284	2316	36	0	132	204	18720	logfile

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