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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Y9Y | 33696 | 2024-03-16 | 2022-06-26 | 2.77 | 3.00 | 2.82 | 3.0 | 0.003 | 0.60 | 0.0 | 0.04 | 17.98 | 0.01 | 2.064 | 8.75 | 1.63 | 1.5 | 98.5 | 0.0 | 0.08 | 0.70 | 0.83 | 3.22 | 3.0 | 0.002 | 0.54 | 0.0 | 0.04 | 18.09 | 0.00 | 2.091 | 7.06 | 3.12 | 2.0 | 98.0 | 0.0 | 0.68 | 0.41 | 0.64 | 0.82 | 3.13 | 13781 | 1545 | 5 | 61 | 4 | 0 | 0 | logfile |
✔ | 8AVW | 15685 | 2024-03-14 | 2022-08-27 | 3.62 | 4.19 | 3.72 | 4.1 | 0.008 | 1.38 | 0.0 | 0.08 | 18.22 | 0.01 | 2.602 | 1.79 | 3.45 | 4.7 | 95.1 | 0.2 | -4.09 | 0.77 | 0.85 | 1.78 | 4.1 | 0.002 | 0.61 | 0.0 | 0.04 | 18.15 | 0.00 | 2.249 | 4.86 | 1.51 | 1.6 | 98.4 | 0.0 | 0.61 | 0.68 | 0.77 | 0.80 | 1.77 | 8992 | 1156 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7TF9 | 25866 | 2024-03-25 | 2022-01-06 | 2.61 | 2.92 | — | 3.0 | 0.005 | 0.68 | 0.0 | 0.05 | 15.76 | 0.00 | 1.872 | 9.56 | 3.66 | 4.1 | 95.9 | 0.0 | 0.50 | 0.45 | 0.67 | 3.27 | 2.9 | 0.002 | 0.47 | 0.0 | 0.04 | 16.72 | 0.00 | 1.930 | 20.30 | 1.19 | 3.5 | 96.5 | 0.0 | 1.04 | 0.52 | 0.70 | 0.86 | 3.86 | 49868 | 6286 | 42 | 0 | 28 | 0 | 140 | logfile |
✔ | 8CVN | 27010 | 2024-03-10 | 2022-05-18 | 2.4 | 3.23 | 2.42 | 3.1 | 0.014 | 1.53 | 3.0 | 0.08 | 18.40 | 0.00 | 2.524 | 1.49 | 1.21 | 2.4 | 97.6 | 0.0 | 0.60 | 0.84 | 0.87 | 3.98 | 3.1 | 0.002 | 0.82 | 0.0 | 0.04 | 17.99 | 0.00 | 2.411 | 2.85 | 1.69 | 1.6 | 98.4 | 0.0 | 1.67 | 0.81 | 0.76 | 0.87 | 3.12 | 4054 | 512 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7TF6 | 25863 | 2024-03-24 | 2022-01-06 | 2.15 | 2.26 | — | 2.3 | 0.002 | 0.51 | 0.0 | 0.04 | 16.47 | 0.00 | 2.048 | 4.68 | 1.34 | 3.7 | 96.3 | 0.0 | 0.26 | 0.48 | 0.71 | 5.34 | 2.3 | 0.002 | 0.48 | 0.0 | 0.04 | 17.09 | 0.00 | 1.896 | 13.30 | 1.34 | 4.4 | 95.6 | 0.0 | 0.72 | 0.34 | 0.71 | 0.87 | 5.50 | 43272 | 5400 | 36 | 0 | 24 | 0 | 120 | logfile |
✔ | 7WAE | 32383 | 2024-03-19 | 2021-12-14 | 2.64 | 3.01 | 2.60 | 2.9 | 0.003 | 0.56 | 0.0 | 0.05 | 13.86 | 0.00 | 1.339 | 7.98 | 0.27 | 3.2 | 96.6 | 0.2 | 0.26 | 0.79 | 0.87 | 2.86 | 2.9 | 0.002 | 0.52 | 0.0 | 0.04 | 15.59 | 0.00 | 1.942 | 7.20 | 1.49 | 3.5 | 96.5 | 0.0 | 0.27 | 0.39 | 0.79 | 0.89 | 2.89 | 24850 | 3227 | 16 | 0 | 19 | 0 | 0 | logfile |
✔ | 7oXo | 13102 | 2024-03-16 | 2021-06-22 | 3.9 | 4.39 | — | 4.1 | 0.013 | 1.34 | 0.0 | 0.07 | 13.05 | 0.01 | 1.986 | 8.38 | 0.02 | 9.3 | 90.7 | 0.0 | -2.64 | 0.87 | 0.81 | 1.07 | 4.1 | 0.002 | 0.59 | 0.0 | 0.04 | 13.93 | 0.00 | 1.932 | 9.52 | 0.32 | 4.3 | 95.7 | 0.0 | -0.52 | 1.13 | 0.86 | 0.79 | 0.89 | 74729 | 4656 | 12 | 0 | 6 | 0 | 37715 | logfile |
✔ | 7XDB | 33142 | 2024-03-21 | 2022-03-26 | 2.62 | 2.82 | 2.70 | 2.8 | 0.004 | 0.64 | 0.0 | 0.05 | 12.33 | 0.01 | 2.111 | 9.82 | 0.00 | 1.9 | 98.1 | 0.0 | 0.54 | 0.69 | 0.83 | 3.23 | 2.8 | 0.002 | 0.53 | 0.0 | 0.04 | 14.50 | 0.00 | 2.125 | 7.65 | 1.06 | 2.3 | 97.7 | 0.0 | 0.34 | 0.42 | 0.69 | 0.86 | 3.25 | 30189 | 3779 | 23 | 0 | 38 | 0 | 0 | logfile |
✔ | 8D0K | 27107 | 2024-03-21 | 2022-05-26 | 4.27 | 4.58 | 4.33 | 4.3 | 0.002 | 0.50 | 0.0 | 0.04 | 14.91 | 0.00 | 2.188 | 9.52 | 0.06 | 3.7 | 96.1 | 0.1 | 0.70 | 0.82 | 0.81 | — | 4.3 | 0.002 | 0.53 | 0.0 | 0.04 | 14.88 | 0.00 | 2.195 | 9.99 | 0.03 | 4.0 | 95.9 | 0.1 | 0.71 | 0.28 | 0.82 | 0.80 | — | 31011 | 3820 | 8 | 20 | 0 | 0 | 0 | logfile |
✔ | 8CT3 | 26979 | 2024-03-14 | 2022-05-13 | 3.3 | 2.97 | 3.21 | 3.1 | 0.002 | 0.48 | 0.0 | 0.04 | 11.16 | 0.01 | 2.215 | 4.29 | 0.63 | 0.9 | 99.1 | 0.0 | 1.87 | 0.51 | 0.72 | 2.16 | 3.1 | 0.002 | 0.51 | 0.0 | 0.04 | 14.24 | 0.00 | 2.180 | 6.63 | 2.42 | 1.7 | 98.3 | 0.0 | 2.00 | 0.84 | 0.52 | 0.77 | 2.02 | 8964 | 1114 | 6 | 0 | 8 | 0 | 0 | logfile |
✔ | 7R04 | 14219 | 2024-03-23 | 2022-02-01 | 3.7 | 4.45 | — | 3.7 | 0.006 | 1.02 | 2.0 | 0.05 | 13.99 | 0.01 | 2.201 | 7.86 | 0.27 | 3.4 | 96.5 | 0.0 | -0.62 | 0.84 | 0.75 | 0.59 | 3.7 | 0.002 | 0.65 | 0.0 | 0.04 | 15.21 | 0.00 | 2.074 | 11.67 | 0.89 | 3.1 | 96.8 | 0.0 | 1.52 | 1.13 | 0.84 | 0.75 | 0.58 | 36250 | 4555 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7MF3 | 23810 | 2024-03-19 | 2021-04-08 | 3.4 | 4.14 | — | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 15.41 | 0.00 | 1.985 | 17.36 | 0.04 | 6.5 | 93.5 | 0.0 | -0.34 | 0.90 | 0.73 | 0.19 | 3.1 | 0.002 | 0.70 | 0.0 | 0.04 | 17.51 | 0.00 | 1.949 | 17.16 | 1.41 | 6.9 | 93.1 | 0.0 | -0.86 | 1.44 | 0.91 | 0.74 | 0.14 | 22938 | 2822 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 7UY6 | 26865 | 2024-03-17 | 2022-05-06 | 2.9 | 2.49 | 2.94 | 3.0 | 0.002 | 0.44 | 0.0 | 0.04 | 18.33 | 0.00 | 2.215 | 4.00 | 0.06 | 1.7 | 98.3 | 0.0 | 1.19 | 0.70 | 0.81 | 3.09 | 2.9 | 0.002 | 0.50 | 0.0 | 0.04 | 19.72 | 0.00 | 2.205 | 5.37 | 2.23 | 2.4 | 97.6 | 0.1 | 1.38 | 0.42 | 0.70 | 0.84 | 2.66 | 18746 | 1847 | 9 | 170 | 1 | 0 | 0 | logfile |
✔ | 7V99 | 31811 | 2024-03-16 | 2021-08-24 | 3.54 | 4.33 | — | 3.3 | 0.002 | 0.53 | 0.0 | 0.03 | 20.83 | 0.00 | 2.258 | 7.85 | 0.10 | 5.9 | 94.1 | 0.1 | -3.21 | 0.79 | 0.68 | 0.93 | 3.3 | 0.002 | 0.59 | 0.0 | 0.03 | 21.18 | 0.00 | 2.191 | 12.80 | 1.60 | 5.9 | 94.0 | 0.1 | -0.17 | 1.38 | 0.82 | 0.76 | 0.55 | 14582 | 1170 | 5 | 249 | 0 | 0 | 0 | logfile |
✔ | 7VAV | 31866 | 2024-03-21 | 2021-08-30 | 2.8 | 2.66 | 3.31 | 3.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.38 | 0.00 | 2.035 | 3.96 | 0.00 | 1.5 | 98.5 | 0.0 | 1.80 | 0.63 | 0.80 | 2.95 | 3.1 | 0.002 | 0.55 | 0.0 | 0.04 | 16.50 | 0.00 | 2.039 | 6.02 | 1.52 | 2.2 | 97.8 | 0.0 | 0.83 | 1.09 | 0.67 | 0.85 | 2.82 | 29520 | 3787 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 7VAX | 31869 | 2024-03-21 | 2021-08-30 | 2.9 | 2.65 | 2.96 | 2.8 | 0.003 | 0.51 | 0.0 | 0.04 | 13.52 | 0.00 | 2.017 | 4.97 | 0.03 | 2.0 | 98.0 | 0.0 | 1.44 | 0.60 | 0.81 | 3.35 | 2.7 | 0.002 | 0.55 | 0.0 | 0.04 | 16.59 | 0.00 | 2.008 | 7.78 | 1.65 | 2.3 | 97.7 | 0.0 | 0.70 | 0.50 | 0.67 | 0.86 | 3.14 | 29553 | 3788 | 15 | 0 | 5 | 0 | 0 | logfile |
✔ | 6U23 | 20616 | 2024-03-16 | 2019-08-19 | 3.49 | 3.15 | 2.92 | 3.1 | 0.007 | 0.94 | 0.0 | 0.06 | 10.42 | 0.01 | 2.111 | 2.99 | 0.39 | 7.3 | 92.7 | 0.0 | -4.54 | 0.79 | 0.81 | 2.84 | 3.1 | 0.002 | 0.64 | 0.0 | 0.04 | 13.40 | 0.00 | 2.238 | 6.28 | 1.48 | 4.7 | 95.3 | 0.0 | -1.25 | 1.67 | 0.81 | 0.83 | 2.37 | 73472 | 9328 | 48 | 0 | 64 | 0 | 0 | logfile |
✔ | 7Yoo | 33985 | 2024-03-14 | 2022-08-01 | 3.11 | 2.28 | — | 3.2 | 0.002 | 0.45 | 0.0 | 0.04 | 13.30 | 0.00 | 2.153 | 3.82 | 0.00 | 1.7 | 98.3 | 0.0 | -0.16 | 0.78 | 0.81 | 3.56 | 3.2 | 0.002 | 0.49 | 0.0 | 0.04 | 15.25 | 0.00 | 2.191 | 4.58 | 1.49 | 2.3 | 97.7 | 0.0 | 0.77 | 0.92 | 0.78 | 0.83 | 3.22 | 9188 | 1169 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R6K | 24280 | 2024-03-18 | 2021-06-22 | 3.17 | 3.23 | 3.15 | 3.2 | 0.003 | 0.52 | 0.0 | 0.04 | 17.70 | 0.00 | 2.200 | 8.68 | 0.00 | 4.3 | 95.7 | 0.0 | 0.58 | 0.73 | 0.79 | 2.37 | 3.2 | 0.002 | 0.50 | 0.0 | 0.04 | 18.41 | 0.00 | 2.183 | 7.48 | 1.25 | 4.4 | 95.6 | 0.0 | 1.31 | 0.40 | 0.73 | 0.82 | 2.26 | 20543 | 2153 | 16 | 152 | 0 | 0 | 0 | logfile |
✔ | 7AU2 | 11923 | 2024-03-15 | 2020-11-02 | 2.43 | 2.52 | — | 2.5 | 0.005 | 0.71 | 0.0 | 0.05 | 15.75 | 0.00 | 2.392 | 2.29 | 0.83 | 2.2 | 97.8 | 0.0 | -0.04 | 0.71 | 0.86 | 4.87 | 2.5 | 0.002 | 0.51 | 0.0 | 0.04 | 15.48 | 0.00 | 2.323 | 3.69 | 1.16 | 1.6 | 98.4 | 0.0 | 0.76 | 0.35 | 0.72 | 0.88 | 3.77 | 11236 | 1372 | 6 | 0 | 12 | 0 | 0 | logfile |