Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R5o	14332	2022-07-07	2022-02-11	1.58	1.60	1.62	1.6	0.020	2.16	73.0	0.21	13.63	0.01	1.924	5.51	0.62	1.2	98.8	0.0	1.54	0.84	0.91	8.10	1.6	0.002	0.57	0.0	0.04	14.14	0.00	2.142	2.12	0.00	1.8	98.2	0.0	5.16	0.31	0.87	0.91	8.29	38520	4152	72	0	24	3384	0	logfile
✔	6RTC	4997	2022-07-04	2019-05-23	3.96	4.05	3.97	4.0	0.007	0.91	0.0	0.05	14.96	0.01	2.295	1.19	0.00	3.9	96.1	0.0	-3.83	0.68	0.80	1.58	4.0	0.002	0.58	0.0	0.04	16.14	0.00	2.258	6.56	0.10	4.6	95.4	0.0	0.77	0.62	0.68	0.81	1.63	19374	1242	2	0	0	0	9804	logfile
✔	7V4i	31712	2022-07-05	2021-08-13	3.3	3.91	—	3.9	0.003	0.58	0.0	0.04	14.20	0.01	2.079	10.56	0.00	5.5	94.5	0.0	-1.15	0.70	0.74	1.97	3.9	0.002	0.59	0.0	0.04	15.95	0.01	2.093	11.00	0.10	4.5	95.5	0.0	-0.85	0.38	0.72	0.76	1.51	27680	3560	10	0	0	0	0	logfile
✔	7F1o	31421	2022-07-03	2021-06-09	3.13	3.74	—	3.7	0.011	1.08	3.0	0.08	15.20	0.01	2.086	11.95	1.81	4.0	96.0	0.0	-2.35	0.63	0.77	2.10	3.7	0.002	0.60	0.0	0.04	16.00	0.00	2.137	9.44	0.56	2.0	98.0	0.0	0.84	0.53	0.62	0.77	2.23	8208	1035	7	1	2	0	0	logfile
✔	6TYi	20583	2022-07-03	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	15.89	0.00	1.796	11.37	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.002	0.52	0.0	0.03	17.16	0.00	2.221	6.27	0.11	2.8	97.2	0.0	3.28	1.18	0.71	0.82	1.28	9184	1186	11	0	4	0	0	logfile
✔	6SYT	10347	2022-07-04	2019-10-01	3.45	3.54	—	3.5	0.018	1.23	0.0	0.16	9.36	0.01	1.903	3.04	0.13	7.5	92.4	0.1	-5.37	0.69	0.81	4.11	3.5	0.002	0.60	0.0	0.04	13.79	0.00	2.060	5.10	0.25	3.1	96.9	0.0	1.00	0.64	0.71	0.84	2.38	18369	2369	5	0	216	0	0	logfile
✔	7VNM	32042	2022-07-04	2021-10-11	2.86	2.50	—	2.7	0.021	1.92	0.0	0.04	16.44	0.05	2.100	8.61	0.34	1.5	98.5	0.0	2.54	0.63	0.86	4.06	2.6	0.002	0.65	0.0	0.04	17.12	0.00	2.156	7.59	1.36	1.3	98.7	0.0	2.77	0.94	0.62	0.87	3.93	20588	2112	55	0	65	0	0	logfile
✔	7RXA	24726	2022-07-03	2021-08-22	3.08	3.22	—	3.3	0.006	1.11	0.0	0.05	15.07	0.01	2.381	1.32	0.00	5.4	94.6	0.0	-4.42	0.67	0.84	2.99	3.3	0.002	0.55	0.0	0.04	13.77	0.00	2.241	2.87	0.14	4.1	95.9	0.0	0.82	0.32	0.67	0.85	2.84	8694	1156	4	0	8	0	0	logfile
✔	7WUG	32830	2022-07-04	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.22	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.002	0.50	0.0	0.04	14.90	0.00	2.167	5.37	0.22	3.2	96.8	0.0	1.47	0.28	0.78	0.87	1.90	17515	2239	5	0	0	0	0	logfile
✔	7MVU	24056	2022-07-05	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.002	0.58	0.0	0.03	11.75	0.00	1.907	11.81	0.07	3.4	96.6	0.0	2.54	2.06	0.88	0.82	0.38	25645	1604	2	0	0	0	12841	logfile
✔	7W0E	32240	2022-07-04	2021-11-18	4.03	3.95	—	3.8	0.003	0.59	0.0	0.04	13.97	0.00	2.094	14.02	0.00	4.8	95.1	0.1	-0.82	0.86	0.75	—	3.8	0.002	0.58	0.0	0.04	14.00	0.00	2.062	12.63	0.07	4.5	95.5	0.1	-0.59	0.38	0.86	0.75	—	14850	1557	5	105	4	0	0	logfile
✔	7oAE	12775	2022-07-03	2021-04-19	2.0	2.65	—	2.2	0.008	0.53	0.0	0.05	9.44	0.00	2.440	0.99	0.00	2.6	97.4	0.0	0.22	0.77	0.91	6.46	2.2	0.002	0.52	0.0	0.04	15.06	0.00	2.223	5.99	0.38	1.8	98.2	0.0	0.44	2.53	0.78	0.92	6.31	12768	1680	42	0	0	0	0	logfile
✔	3JB6	6408	2022-07-04	2015-08-02	3.3	3.35	—	3.4	0.010	0.90	4.0	0.06	9.55	0.01	2.123	8.54	0.20	2.4	97.4	0.1	-3.72	0.63	0.90	5.02	3.4	0.002	0.58	0.0	0.04	15.06	0.00	2.157	5.94	0.20	1.8	98.2	0.0	0.16	1.19	0.63	0.88	3.71	13904	1731	6	0	2	0	0	logfile
✔	6V5V	21054	2022-07-02	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	6.41	0.00	4.6	95.4	0.0	-2.04	0.52	0.83	2.06	3.9	0.002	0.54	0.0	0.04	14.64	0.00	2.192	8.26	0.30	3.2	96.8	0.0	0.28	0.57	0.53	0.82	1.76	2979	369	1	1	0	0	0	logfile
✔	7T37	25650	2022-07-04	2021-12-07	3.7	4.02	—	4.0	0.007	0.85	0.0	0.05	13.07	0.01	2.247	4.17	0.00	3.8	96.2	0.0	-1.43	0.69	0.82	2.15	4.0	0.002	0.51	0.0	0.03	14.10	0.00	2.291	6.52	0.00	2.8	97.2	0.0	1.29	0.29	0.68	0.82	1.94	20176	2476	8	0	8	0	0	logfile
✔	7T38	25651	2022-07-04	2021-12-07	3.8	4.03	—	4.0	0.004	0.78	0.0	0.04	13.60	0.01	2.319	4.29	0.39	3.1	96.9	0.0	-1.24	0.68	0.81	1.54	4.0	0.002	0.53	0.0	0.03	15.47	0.00	2.252	5.73	0.24	3.8	96.2	0.0	1.61	1.56	0.70	0.82	1.30	19404	2432	4	0	0	0	0	logfile
✔	7P37	13178	2022-07-04	2021-07-07	2.96	3.18	3.03	3.2	0.005	0.85	0.0	0.05	11.41	0.00	2.280	7.21	0.00	2.4	97.6	0.0	1.79	0.68	0.76	2.89	3.2	0.002	0.51	0.0	0.04	15.41	0.00	2.174	9.77	2.05	2.8	97.2	0.0	1.54	0.92	0.71	0.81	3.09	14496	1764	24	0	36	0	0	logfile
✔	7RXB	24727	2022-07-03	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	14.60	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.002	0.53	0.0	0.04	14.50	0.00	2.378	2.10	0.25	5.3	94.7	0.0	-0.04	0.27	0.65	0.89	3.11	8506	1096	4	0	8	0	0	logfile
✔	6HYP	0309	2022-07-03	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.002	0.67	0.0	0.04	8.23	0.00	2.173	3.43	0.00	7.0	92.9	0.1	-1.16	0.61	0.76	0.73	—	12392	2082	1	0	192	0	0	logfile
✔	6VVo	21405	2022-07-05	2020-02-18	3.4	3.45	—	3.3	0.008	0.82	0.0	0.05	14.00	0.00	1.915	9.86	0.41	4.7	95.2	0.1	-2.93	0.89	0.86	2.75	3.3	0.002	0.54	0.0	0.04	15.19	0.00	1.979	7.08	0.27	3.1	96.9	0.0	0.71	1.15	0.90	0.88	2.49	19668	2493	13	0	9	0	0	logfile

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