Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RJG	4904	2021-01-05	2019-04-26	3.2	3.36	—	3.3	0.008	0.96	0.0	0.06	16.97	0.01	2.297	2.15	0.10	6.8	93.2	0.0	-3.61	0.65	0.85	3.05	3.3	0.002	0.51	0.0	0.03	15.66	0.00	2.153	5.21	0.00	4.6	95.4	0.0	0.46	1.03	0.65	0.83	2.28	12220	1180	6	123	0	0	0	logfile
✔	6UZD	20957	2021-01-07	2019-11-14	3.4	3.56	—	3.4	0.007	0.84	0.0	0.06	15.38	0.01	2.258	6.11	0.31	5.7	94.3	0.0	-4.30	0.77	0.84	2.82	3.4	0.002	0.56	0.0	0.04	14.28	0.00	2.150	8.20	0.02	4.5	95.5	0.0	-1.26	1.19	0.77	0.82	2.55	42822	5374	16	0	14	0	0	logfile
✔	6U88	20682	2021-01-06	2019-09-04	3.2	3.34	3.28	3.3	0.011	1.22	0.0	0.19	15.76	0.01	2.328	4.10	0.74	3.2	96.8	0.0	-4.92	0.68	0.82	2.57	3.3	0.002	0.68	0.0	0.04	15.16	0.00	2.264	6.34	0.00	1.8	98.2	0.0	0.67	1.62	0.69	0.82	2.93	20004	2444	8	0	4	0	0	logfile
✔	6oR5	9032	2021-01-05	2019-04-29	4.0	4.23	—	3.9	0.006	0.93	0.0	0.05	11.50	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.58	0.0	0.04	9.07	0.00	2.142	4.78	0.00	14.9	85.1	0.0	-1.17	1.35	0.76	0.79	—	10364	2058	1	0	5	0	0	logfile
✔	6UZZ	20965	2021-01-06	2019-11-16	3.1	3.48	—	3.4	0.009	0.92	0.0	0.06	10.61	0.01	2.325	2.53	0.24	1.8	98.0	0.2	-4.22	0.60	0.81	3.12	3.4	0.002	0.47	0.0	0.04	13.40	0.00	2.255	6.11	0.00	2.2	97.8	0.0	3.30	1.62	0.58	0.78	2.02	15832	1984	12	0	8	0	0	logfile
✔	6H3J	0134	2021-01-06	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.22	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.002	0.57	0.0	0.04	11.74	0.00	1.903	55.01	0.00	18.5	81.5	0.0	-5.01	0.68	0.77	0.85	3.07	20301	2511	3	0	0	0	212	logfile
✔	6MRW	9214	2021-01-08	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.39	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.50	0.0	0.03	11.89	0.01	2.129	6.78	0.00	1.9	98.1	0.0	6.47	1.34	0.82	0.83	—	31346	3990	14	0	0	0	0	logfile
✔	6RVS	10011	2021-01-07	2019-05-31	3.59	3.68	—	3.6	0.007	1.04	12.0	0.06	14.97	0.01	2.307	7.35	0.56	8.4	91.1	0.5	-4.57	0.77	0.82	2.18	3.6	0.002	0.64	0.0	0.04	13.96	0.00	2.287	6.88	0.00	8.0	92.0	0.0	-0.46	1.26	0.77	0.81	1.75	38388	4764	12	0	0	0	0	logfile
✔	6NHT	9373	2021-01-06	2018-12-23	2.9	3.26	3.11	3.3	0.006	0.75	0.0	0.04	15.21	0.00	2.394	2.27	0.45	2.1	97.9	0.0	-5.86	0.68	0.85	2.73	3.3	0.002	0.51	0.0	0.04	12.52	0.00	2.267	3.08	0.00	0.9	99.1	0.0	1.66	1.59	0.63	0.81	2.73	26136	3432	24	0	0	0	0	logfile
✔	6DJV	7943	2021-01-06	2018-05-26	3.9	3.95	—	3.9	0.006	1.11	0.0	0.06	12.81	0.01	1.913	6.30	0.72	12.5	87.1	0.4	-4.95	0.75	0.80	1.99	3.9	0.002	0.67	0.0	0.04	13.66	0.00	2.156	7.80	0.57	9.0	90.9	0.1	-1.25	1.43	0.75	0.80	1.55	27318	3530	13	0	12	0	0	logfile
✔	6RJ9	4900	2021-01-05	2019-04-26	3.2	3.37	—	3.3	0.006	0.78	0.0	0.05	15.21	0.01	2.292	2.59	0.28	6.7	93.3	0.0	-3.87	0.67	0.86	2.60	3.3	0.002	0.49	0.0	0.04	14.44	0.00	2.238	5.05	0.00	4.1	95.9	0.0	-0.26	0.42	0.67	0.85	2.45	11874	1202	5	97	0	0	0	logfile
✔	6HKo	0238	2021-01-07	2018-09-07	3.42	3.56	—	3.5	0.006	0.90	0.0	0.06	11.99	0.01	1.761	5.28	0.14	5.6	94.4	0.0	-4.42	0.73	0.83	3.57	3.5	0.002	0.61	0.0	0.04	14.18	0.00	2.033	9.87	0.08	3.3	96.7	0.0	-0.60	1.30	0.73	0.84	2.80	34518	4154	23	73	8	0	0	logfile
✔	6R8F	4759	2021-01-06	2019-04-01	3.8	3.84	3.74	3.8	0.013	1.15	0.0	0.07	10.25	0.01	2.059	3.60	0.00	11.0	89.0	0.0	-5.94	0.78	0.79	3.13	3.8	0.002	0.61	0.0	0.04	12.49	0.00	2.054	7.96	0.13	6.5	93.5	0.0	-1.07	1.36	0.79	0.79	2.34	15810	2000	10	0	166	0	0	logfile
✔	5KUF	8289	2021-01-06	2016-07-13	3.8	3.80	—	3.7	0.009	1.04	0.0	0.05	8.87	0.01	2.021	28.38	0.08	15.5	84.4	0.1	-5.82	0.61	0.71	1.68	3.7	0.002	0.67	0.0	0.04	12.24	0.00	2.137	12.25	0.04	5.1	94.9	0.0	-1.15	1.59	0.60	0.68	1.23	23728	3000	8	0	4	0	0	logfile
✔	6PUS	20480	2021-01-07	2019-07-18	3.7	4.57	—	3.8	0.012	1.15	0.0	0.06	14.52	0.01	2.208	8.80	1.64	7.9	91.6	0.5	-3.61	0.75	0.84	1.56	3.8	0.002	0.60	0.0	0.04	12.81	0.00	2.235	6.85	0.00	5.2	94.7	0.1	0.20	0.50	0.74	0.83	1.74	37380	5224	8	0	12	0	0	logfile
✔	6MRT	9212	2021-01-07	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.002	0.45	0.0	0.03	12.40	0.00	2.199	3.20	0.00	0.3	99.7	0.0	5.55	3.07	0.69	0.83	2.50	26868	3420	12	0	0	0	0	logfile
✔	6SP2	10279	2021-01-06	2019-08-30	3.33	3.92	3.50	3.8	0.011	1.07	0.0	0.23	14.00	0.00	1.590	8.11	0.00	4.7	95.3	0.0	-0.56	0.49	0.67	2.32	3.8	0.002	0.61	0.0	0.04	13.29	0.00	2.316	5.90	0.00	4.1	95.9	0.0	2.83	1.51	0.62	0.78	1.55	18498	2190	12	0	24	0	0	logfile
✔	6E7P	9000	2021-01-06	2018-07-27	3.5	3.61	—	3.7	0.009	1.06	0.0	0.48	12.57	0.01	2.289	3.60	0.24	8.0	91.8	0.2	-5.15	0.62	0.81	4.17	3.8	0.002	0.62	0.0	0.04	12.26	0.00	2.299	5.05	0.00	4.8	95.2	0.0	-0.55	0.71	0.62	0.80	3.09	15508	1900	8	0	4	0	0	logfile
✔	3JBS	6478	2021-01-05	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.002	0.58	0.0	0.04	11.45	0.00	2.353	4.14	0.00	2.3	97.7	0.0	0.55	2.91	0.21	0.79	3.78	1401	175	1	0	0	0	0	logfile
✔	6RiU	4898	2021-01-05	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.66	0.0	0.03	13.20	0.00	1.969	13.17	0.00	4.5	95.5	0.0	0.20	1.65	0.59	0.72	1.07	2882	182	2	0	0	0	1430	logfile

• Page 1 of 179
• next →