Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X15	21989	2023-08-11	2020-05-18	3.05	3.20	—	3.2	0.009	1.26	0.0	0.05	19.04	0.01	2.281	3.63	0.00	3.1	96.9	0.0	-3.80	0.73	0.87	2.90	3.2	0.002	0.52	0.0	0.04	15.45	0.00	2.161	5.83	0.10	2.8	97.2	0.0	1.71	0.44	0.72	0.88	2.57	10026	1260	9	0	51	9	0	logfile
✔	8EYY	28724	2023-08-16	2022-10-29	4.9	6.21	5.32	4.3	0.003	0.58	0.0	0.04	12.98	0.00	2.165	21.05	0.06	7.2	92.6	0.2	-1.16	0.89	0.81	—	4.3	0.002	0.57	0.0	0.04	13.19	0.00	2.184	20.45	0.00	6.9	93.1	0.1	-1.01	1.12	0.90	0.84	—	14301	1773	6	0	0	0	0	logfile
✔	7WPZ	32693	2023-08-09	2022-01-24	3.8	3.48	—	3.6	0.013	1.41	1.0	0.11	9.57	0.01	2.431	1.73	0.74	2.2	97.4	0.4	-0.13	0.75	0.74	2.80	3.6	0.002	0.56	0.0	0.04	13.59	0.00	2.222	4.23	0.00	2.2	97.8	0.0	1.68	1.38	0.78	0.79	2.18	5756	787	8	0	15	0	0	logfile
✔	6XLF	22242	2023-08-13	2020-06-28	3.15	3.29	—	3.2	0.003	0.47	0.0	0.04	12.70	0.00	2.115	6.23	1.20	1.6	98.4	0.0	-4.12	0.75	0.79	2.37	3.2	0.002	0.54	0.0	0.04	15.92	0.00	1.975	9.75	0.33	2.5	97.5	0.0	-0.64	2.49	0.78	0.85	2.67	13653	1680	6	0	6	0	0	logfile
✔	7CQK	30442	2023-08-10	2020-08-11	3.3	3.38	—	3.3	0.011	1.34	3.0	0.08	19.23	0.01	0.963	29.97	21.66	11.3	87.7	1.0	-5.35	0.70	0.84	2.60	3.3	0.002	0.67	0.0	0.04	16.86	0.00	2.227	5.71	0.11	4.8	95.1	0.1	-1.06	2.02	0.71	0.86	2.18	8859	1116	7	0	2	0	0	logfile
✔	7LMA	23437	2023-08-15	2021-02-05	3.3	3.45	—	3.4	0.004	0.56	0.0	0.04	16.77	0.00	2.202	6.67	0.91	4.3	95.7	0.0	-2.64	0.73	0.82	2.57	3.4	0.002	0.55	0.0	0.04	17.83	0.00	2.068	7.82	0.24	2.7	97.3	0.0	0.22	0.56	0.76	0.84	1.91	18672	1837	9	170	1	0	0	logfile
✔	7LMS	23441	2023-08-09	2021-02-05	3.5	4.13	3.61	4.0	0.019	1.52	0.0	0.09	10.07	0.01	2.432	0.41	0.00	0.2	99.8	0.0	0.57	0.81	0.83	3.45	4.0	0.002	0.59	0.0	0.04	14.69	0.00	2.183	6.65	0.38	1.5	98.5	0.0	0.72	1.43	0.74	0.82	2.22	4947	613	4	0	1	0	0	logfile
✔	6UW6	20918	2023-08-16	2019-11-04	3.66	3.79	—	3.8	0.015	1.24	0.0	0.07	16.71	0.01	2.299	5.68	0.00	8.4	91.6	0.0	-4.85	0.70	0.84	2.14	3.8	0.002	0.61	0.0	0.04	17.33	0.00	2.192	7.93	0.33	6.4	93.6	0.0	0.47	0.58	0.69	0.83	1.52	20072	2408	8	0	20	0	0	logfile
✔	6WB1	21584	2023-08-10	2020-03-26	4.7	4.87	—	4.6	0.002	0.50	0.0	0.04	12.49	0.00	2.204	7.21	0.55	4.5	95.4	0.1	-4.82	0.86	0.80	—	4.6	0.002	0.58	0.0	0.04	13.01	0.00	2.198	8.49	0.00	3.6	96.4	0.0	-0.61	0.69	0.87	0.83	—	8235	944	4	75	0	0	0	logfile
✔	6HLQ	0239	2023-08-22	2018-09-11	3.18	3.18	—	3.2	0.006	0.90	0.0	0.06	12.11	0.01	1.742	5.18	0.09	4.6	95.4	0.0	-4.49	0.68	0.82	4.22	3.2	0.002	0.59	0.0	0.04	16.51	0.00	1.964	9.13	0.40	3.0	97.0	0.0	-0.28	0.72	0.69	0.86	3.21	32731	3926	22	73	9	0	0	logfile
✔	7oo0	13003	2023-08-14	2021-05-26	3.1	3.05	2.96	3.1	0.009	0.86	0.0	0.05	12.75	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.002	0.49	0.0	0.04	13.55	0.00	2.304	5.53	0.13	1.4	98.6	0.0	1.58	1.53	0.61	0.79	2.28	16016	1834	14	0	56	0	0	logfile
✔	5U6o	8511	2023-08-13	2016-12-08	3.5	3.58	—	3.5	0.008	1.44	0.0	0.08	11.34	0.01	2.380	2.59	0.00	4.6	95.4	0.0	1.02	0.54	0.66	2.98	3.5	0.002	0.61	0.0	0.04	15.08	0.00	2.203	9.26	0.37	1.9	98.1	0.0	2.22	0.66	0.67	0.82	1.80	14480	1928	4	0	0	0	0	logfile
✔	6WB2	21585	2023-08-10	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.78	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.56	0.0	0.04	12.11	0.00	2.206	8.83	0.00	3.3	96.7	0.0	-0.40	0.64	0.86	0.82	—	8407	946	4	75	0	0	0	logfile
✔	7XK0	33239	2023-08-11	2022-04-19	3.59	3.85	3.58	3.7	0.011	0.96	0.0	0.06	16.28	0.01	2.206	10.11	5.36	10.4	89.6	0.0	-5.27	0.81	0.86	2.36	3.7	0.002	0.57	0.0	0.04	15.47	0.00	2.172	5.56	0.24	4.7	95.3	0.0	-1.30	0.56	0.80	0.84	1.65	9208	983	2	70	1	0	0	logfile
✔	7LPB	23475	2023-08-15	2021-02-11	3.54	3.01	3.50	3.6	0.012	1.07	0.0	0.06	18.06	0.01	2.226	10.00	0.00	5.7	94.3	0.0	-1.27	0.61	0.75	2.16	3.6	0.002	0.51	0.0	0.04	16.38	0.00	2.293	5.88	0.25	1.7	98.3	0.0	1.02	1.62	0.60	0.69	1.48	18392	2384	8	0	28	0	0	logfile
✔	7LPC	23476	2023-08-14	2021-02-11	3.06	2.87	2.85	3.1	0.013	1.23	0.0	0.21	20.11	0.00	2.188	5.69	0.00	2.0	98.0	0.0	0.83	0.64	0.80	2.87	3.1	0.002	0.44	0.0	0.03	14.73	0.00	2.212	6.03	0.07	2.4	97.6	0.0	2.33	0.57	0.66	0.84	2.71	15256	1816	8	0	40	0	0	logfile
✔	7CQi	30441	2023-08-11	2020-08-11	3.2	3.33	—	3.3	0.012	1.51	5.0	0.09	16.83	0.01	0.997	19.68	13.06	10.7	88.6	0.7	-5.50	0.71	0.85	3.34	3.3	0.002	0.67	0.0	0.04	16.25	0.00	2.078	6.94	0.42	5.9	94.0	0.1	-1.69	2.28	0.71	0.86	2.51	8881	1117	6	0	2	0	0	logfile
✔	8A0E	15052	2023-08-12	2022-05-27	2.8	3.09	2.92	3.0	0.003	0.60	0.0	0.04	13.10	0.00	2.176	2.58	0.00	1.7	98.3	0.0	-0.22	0.76	0.89	4.52	3.0	0.002	0.48	0.0	0.04	15.33	0.00	2.194	2.70	0.55	1.5	98.5	0.0	0.08	0.31	0.74	0.90	3.82	12082	1526	9	0	7	0	0	logfile
✔	7N74	24219	2023-08-10	2021-06-09	2.8	3.52	2.84	3.3	0.006	0.89	0.0	0.10	12.93	0.01	1.844	7.52	0.00	2.2	97.8	0.0	0.74	0.75	0.84	3.27	3.3	0.002	0.57	0.0	0.04	14.64	0.00	2.167	4.93	2.06	1.9	98.1	0.0	2.39	0.54	0.68	0.82	2.46	7859	1036	1	0	4	3	0	logfile
✔	6BCJ	7081	2023-08-20	2017-10-20	3.14	3.22	—	3.2	0.008	0.97	0.0	0.05	9.60	0.01	2.301	2.63	0.38	5.9	94.1	0.0	-4.83	0.68	0.84	3.10	3.2	0.002	0.59	0.0	0.04	14.13	0.00	2.243	7.14	0.03	5.1	94.9	0.0	1.36	0.76	0.71	0.84	2.10	29868	3744	9	0	4	8	0	logfile

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