Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M3J	23655	2023-02-19	2021-03-18	4.1	3.93	—	3.9	0.010	1.09	3.0	0.07	12.02	0.01	2.274	2.71	0.12	5.8	94.2	0.0	-2.70	0.82	0.82	—	3.9	0.002	0.57	0.0	0.04	11.83	0.00	2.312	4.34	0.00	3.7	96.3	0.0	-0.52	1.19	0.82	0.81	—	11001	1562	5	0	11	0	0	logfile
✔	7PMH	13533	2023-02-19	2021-09-02	3.4	4.28	3.26	3.3	0.009	1.01	3.0	0.06	14.97	0.01	1.310	4.17	0.09	0.2	99.8	0.0	-1.51	0.91	0.83	3.35	3.3	0.002	0.63	1.0	0.04	15.46	0.00	2.076	7.04	0.00	1.2	98.8	0.0	1.79	1.28	0.94	0.88	2.75	10154	1259	6	0	6	0	0	logfile
✔	7RYC	24733	2023-02-18	2021-08-24	2.9	2.34	—	3.0	0.006	0.86	0.0	0.05	13.76	0.00	2.198	5.49	0.38	4.9	95.1	0.0	-2.98	0.80	0.77	2.64	3.0	0.002	0.59	0.0	0.04	15.68	0.00	2.224	3.93	1.62	2.3	97.7	0.0	0.16	0.48	0.82	0.81	2.24	8277	1125	6	0	2	0	0	logfile
✔	7DDP	30653	2023-02-17	2020-10-29	3.4	2.88	—	3.3	0.003	0.54	0.0	0.04	14.12	0.00	2.100	8.38	0.29	2.0	98.0	0.0	-1.50	0.70	0.77	2.19	3.3	0.002	0.53	0.0	0.04	15.96	0.00	2.059	8.85	0.00	2.0	98.0	0.0	1.03	0.38	0.70	0.79	1.97	6477	791	4	0	6	0	0	logfile
✔	7NCA	12264	2023-02-19	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.49	0.0	0.05	12.94	0.00	2.433	0.77	0.39	2.7	97.3	0.0	-2.96	0.76	0.69	0.85	3.43	10428	732	12	0	0	0	5376	logfile
✔	7DDo	30655	2023-02-17	2020-10-29	3.4	3.24	—	3.2	0.002	0.53	0.0	0.04	14.10	0.00	2.062	7.30	0.00	2.5	97.5	0.0	-1.39	0.73	0.79	2.11	3.2	0.002	0.57	0.0	0.04	15.64	0.00	2.065	9.91	0.14	2.8	97.2	0.0	0.93	0.34	0.73	0.80	2.17	6468	791	4	0	5	0	0	logfile
✔	6M7D	30129	2023-02-17	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	13.84	0.00	2.157	15.48	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.002	0.51	0.0	0.04	15.72	0.00	2.232	8.89	1.46	1.5	98.5	0.0	2.16	0.85	0.34	0.88	3.05	3280	412	2	6	0	0	0	logfile
✔	7C8D	30305	2023-02-20	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	8.95	6.05	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	2.8	0.002	0.64	0.0	0.04	18.00	0.00	2.083	10.40	3.98	4.8	95.2	0.0	0.18	1.10	0.72	0.78	2.43	6359	792	3	0	1	0	0	logfile
✔	7R9E	24324	2023-02-18	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.56	0.0	0.04	9.08	0.00	2.177	7.90	0.00	5.0	95.0	0.0	0.09	1.76	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	7R9M	24329	2023-02-18	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.14	0.00	2.110	9.06	0.00	2.6	97.4	0.0	-0.08	1.73	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	7SJN	25162	2023-02-23	2021-10-18	3.4	3.82	3.28	3.8	0.004	0.65	3.0	0.05	12.76	0.00	2.246	8.28	0.00	3.2	96.8	0.0	-0.44	0.71	0.73	1.67	3.8	0.002	0.54	0.0	0.05	14.42	0.00	2.140	7.13	0.19	4.4	95.6	0.0	-0.28	2.54	0.73	0.77	1.90	19062	1251	9	0	0	0	9483	logfile
✔	7TT2	26108	2023-02-23	2022-01-31	4.2	4.39	—	4.3	0.004	0.91	0.0	0.05	10.68	0.01	2.171	2.60	0.00	1.4	98.6	0.0	0.80	0.70	0.75	—	4.3	0.002	0.60	0.0	0.04	12.96	0.00	1.971	7.57	0.00	3.3	96.7	0.0	0.23	1.58	0.68	0.75	—	20355	1328	6	0	0	0	9973	logfile
✔	7TT7	26113	2023-02-20	2022-01-31	4.8	5.05	—	4.9	0.003	0.84	0.0	0.05	10.50	0.00	2.205	5.04	0.00	1.3	98.7	0.0	0.94	0.66	0.63	—	4.8	0.002	0.58	0.0	0.04	11.88	0.00	1.846	9.10	0.00	3.3	96.7	0.0	-0.18	1.58	0.70	0.73	—	13296	867	5	0	0	0	6468	logfile
✔	6VRB	21366	2023-02-20	2020-02-07	3.0	3.08	—	3.1	0.009	1.20	2.0	0.08	14.70	0.01	1.877	16.10	3.12	7.9	92.1	0.0	-4.13	0.74	0.77	2.24	3.1	0.002	0.59	0.0	0.04	18.07	0.00	2.183	6.00	3.04	5.4	94.6	0.0	0.42	1.44	0.79	0.86	1.99	11581	1260	3	52	0	0	0	logfile
✔	7JZW	22582	2023-02-25	2020-09-02	3.2	2.44	—	3.2	0.010	0.97	0.0	0.05	16.21	0.01	2.237	5.94	0.13	6.9	93.0	0.0	-3.86	0.85	0.84	3.35	3.2	0.002	0.56	0.0	0.04	17.02	0.00	2.092	10.87	0.26	5.6	94.4	0.0	-0.33	0.39	0.85	0.85	2.51	24266	2986	11	61	0	0	0	logfile
✔	6SYT	10347	2023-02-22	2019-10-01	3.45	3.54	—	3.5	0.018	1.23	0.0	0.16	9.36	0.01	1.903	3.04	0.13	7.5	92.4	0.1	-5.37	0.69	0.81	4.11	3.5	0.002	0.61	0.0	0.04	13.84	0.00	2.001	5.33	0.31	3.3	96.7	0.0	0.84	0.64	0.71	0.85	2.64	18369	2369	5	0	216	0	0	logfile
✔	6U5N	20650	2023-02-20	2019-08-28	3.2	3.32	—	3.3	0.006	0.76	0.0	0.05	14.13	0.01	1.907	2.80	0.15	4.8	95.2	0.0	-3.09	0.72	0.84	2.62	3.3	0.002	0.46	0.0	0.05	15.73	0.00	2.145	5.34	0.44	2.3	97.7	0.0	0.97	1.21	0.67	0.84	2.00	13262	1776	24	0	24	8	0	logfile
✔	7ZDQ	14666	2023-02-17	2022-03-29	3.2	2.77	3.10	2.9	0.002	0.54	0.0	0.04	15.18	0.00	2.212	6.38	0.15	2.3	97.7	0.0	1.48	0.71	0.81	3.08	3.1	0.002	0.49	0.0	0.04	16.10	0.00	2.218	5.89	0.15	2.8	97.2	0.0	1.51	0.24	0.71	0.84	3.04	6264	763	3	0	3	0	0	logfile
✔	6QCS	4511	2023-02-22	2018-12-30	3.1	3.55	—	3.2	0.008	0.85	0.0	0.05	14.45	0.01	2.141	4.46	5.64	4.3	95.7	0.0	-3.72	0.90	0.84	3.42	3.2	0.002	0.56	0.0	0.04	14.99	0.00	2.026	7.77	0.10	3.0	97.0	0.0	0.34	1.97	0.92	0.89	2.77	18278	2207	8	33	3	0	0	logfile
✔	6U5R	20653	2023-02-22	2019-08-28	3.6	3.71	—	3.6	0.011	0.96	0.0	0.06	14.54	0.01	1.768	5.09	0.23	6.2	93.8	0.0	-4.18	0.73	0.85	2.03	3.7	0.002	0.55	0.0	0.04	16.77	0.00	2.250	6.81	0.11	2.9	97.1	0.0	0.20	0.56	0.70	0.83	1.03	16516	2156	24	0	8	8	0	logfile

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