Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MQR	23950	2023-08-13	2021-05-06	4.1	4.43	4.11	4.2	0.007	1.32	0.0	0.07	14.72	0.01	2.382	3.72	0.60	9.7	89.9	0.3	-3.42	0.85	0.80	—	4.2	0.002	0.63	0.0	0.04	13.96	0.00	2.239	9.80	0.00	7.1	92.7	0.2	-1.15	0.47	0.85	0.82	—	14878	1810	12	0	20	0	0	logfile
✔	6PQP	20450	2023-08-16	2019-07-09	3.06	3.46	3.03	3.4	0.012	1.29	0.0	0.23	16.31	0.01	2.132	8.72	0.19	4.3	95.7	0.0	-3.28	0.74	0.82	3.00	3.4	0.002	0.59	0.0	0.04	16.25	0.00	2.161	6.19	0.24	2.6	97.4	0.0	1.89	2.26	0.74	0.85	2.17	20492	2460	12	0	36	0	0	logfile
✔	8DPG	27634	2023-08-10	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.47	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.1	0.002	0.54	0.0	0.04	13.50	0.00	2.090	5.22	0.12	2.2	97.8	0.0	1.05	1.11	0.76	0.72	1.84	8162	1093	6	0	2	0	0	logfile
✔	6NR4	0489	2023-08-17	2019-01-22	4.3	4.39	4.24	4.3	0.006	0.93	0.0	0.05	9.96	0.01	2.319	3.34	0.39	4.7	95.3	0.0	-3.24	0.60	0.77	—	4.3	0.002	0.58	0.0	0.04	11.99	0.00	2.161	7.21	0.00	4.2	95.8	0.0	2.17	0.79	0.60	0.78	—	23264	3036	4	0	180	0	0	logfile
✔	7XQ9	33391	2023-08-16	2022-05-07	3.3	3.62	3.55	3.8	0.005	0.83	0.0	0.06	14.70	0.01	2.253	1.72	3.89	3.6	96.4	0.0	-2.05	0.52	0.82	2.74	3.8	0.002	0.51	0.0	0.03	15.61	0.00	2.205	4.12	0.14	2.2	97.8	0.0	3.52	0.53	0.54	0.83	2.53	19632	2412	12	0	0	0	0	logfile
✔	8iW1	35761	2023-08-10	2023-03-29	3.4	2.38	3.19	2.2	0.007	0.86	1.0	0.06	15.68	0.01	2.179	10.19	0.59	5.6	94.4	0.0	-1.82	0.77	0.71	1.64	2.2	0.002	0.60	0.0	0.04	16.72	0.00	2.015	7.29	0.47	3.6	96.4	0.0	-0.02	0.55	0.77	0.75	1.86	8327	1107	5	0	0	0	0	logfile
✔	7RYP	24744	2023-08-12	2021-08-25	4.8	5.38	4.84	6.5	0.015	1.50	0.0	0.07	10.94	0.01	2.098	4.80	0.00	6.2	92.1	1.7	-1.44	0.78	0.73	—	6.6	0.002	0.60	0.0	0.04	12.79	0.00	1.890	10.59	0.00	9.8	90.1	0.1	-0.44	1.01	0.77	0.71	—	11293	725	2	0	0	0	5599	logfile
✔	8EL7	28223	2023-08-09	2022-09-23	2.8	3.11	2.95	3.1	0.006	0.61	0.0	0.04	13.13	0.00	2.295	2.43	0.00	1.7	98.3	0.0	0.97	0.57	0.80	2.31	3.1	0.002	0.46	0.0	0.04	14.99	0.00	2.314	1.88	1.74	2.2	97.8	0.0	0.68	0.27	0.58	0.81	2.13	4562	604	2	0	0	5	0	logfile
✔	7S9D	24933	2023-08-11	2021-09-20	4.6	4.40	—	4.1	0.006	0.89	0.0	0.05	11.27	0.00	2.095	23.20	0.35	10.7	89.0	0.3	-0.95	0.61	0.80	—	4.1	0.002	0.63	0.0	0.04	11.92	0.00	2.234	10.40	0.00	7.4	92.3	0.3	-0.77	0.46	0.59	0.77	—	10462	1354	2	0	0	0	0	logfile
✔	7K59	22678	2023-08-23	2020-09-16	4.2	4.70	4.40	4.3	0.006	1.08	0.0	0.06	15.77	0.01	2.198	6.36	2.19	5.8	94.2	0.0	-4.45	0.88	0.82	—	4.3	0.002	0.69	0.0	0.04	14.65	0.00	2.130	10.99	0.00	4.4	95.6	0.0	-0.77	0.72	0.89	0.83	—	35052	4446	6	0	0	0	0	logfile
✔	7EW7	31349	2023-08-12	2021-05-24	3.27	3.91	—	3.9	0.003	0.59	0.0	0.04	13.52	0.00	2.016	6.73	0.71	3.6	96.4	0.0	-2.17	0.56	0.74	2.49	3.9	0.002	0.54	0.0	0.04	15.58	0.00	2.134	6.73	0.20	3.8	96.2	0.0	-0.29	0.95	0.60	0.78	1.96	9004	1144	6	0	1	0	0	logfile
✔	7N0L	24108	2023-08-09	2021-05-25	2.8	2.17	—	3.1	0.065	1.95	0.0	0.04	21.58	0.00	1.675	18.13	9.23	2.0	98.0	0.0	-6.10	0.56	0.80	3.16	3.1	0.002	0.66	0.0	0.04	19.76	0.00	2.190	15.04	5.90	0.3	99.7	0.0	1.88	1.26	0.56	0.81	2.04	5270	626	4	0	2	0	0	logfile
✔	7WHR	32509	2023-08-14	2021-12-31	3.4	4.06	—	4.0	0.003	0.60	0.0	0.05	13.11	0.00	2.190	10.13	0.00	7.4	92.6	0.0	-2.33	0.66	0.74	2.21	4.0	0.002	0.65	0.0	0.05	15.04	0.00	2.235	10.83	0.11	6.9	93.0	0.1	-2.70	0.36	0.63	0.70	1.70	16914	2184	6	0	0	0	0	logfile
✔	6VYG	21459	2023-08-13	2020-02-26	3.5	3.58	—	3.5	0.004	0.69	0.0	0.04	14.05	0.00	2.094	7.99	0.54	9.2	90.8	0.0	-3.60	0.73	0.84	3.44	3.5	0.002	0.58	0.0	0.04	16.12	0.00	2.160	7.84	0.20	6.9	93.1	0.0	-0.78	0.43	0.71	0.83	2.28	13616	1732	4	0	0	0	0	logfile
✔	7MDi	23773	2023-08-21	2021-04-05	4.3	4.42	—	4.3	0.006	0.75	0.0	0.04	13.13	0.00	2.089	11.76	0.17	10.8	89.2	0.1	-4.24	0.78	0.81	—	4.3	0.002	0.59	0.0	0.04	13.04	0.00	1.965	8.19	0.00	9.3	90.7	0.0	-1.47	0.46	0.78	0.81	—	30608	4348	20	0	24	24	0	logfile
✔	7WV9	32850	2023-08-10	2022-02-10	3.36	3.51	—	3.6	0.005	0.77	0.0	0.05	13.78	0.00	2.206	11.96	0.53	5.0	94.9	0.1	-0.80	0.57	0.67	1.09	3.6	0.002	0.60	0.0	0.04	15.49	0.00	2.234	12.64	0.32	4.6	95.4	0.0	-0.65	0.94	0.59	0.71	0.52	8848	1141	6	0	2	0	0	logfile
✔	7LPC	23476	2023-08-14	2021-02-11	3.06	2.87	2.85	3.1	0.013	1.23	0.0	0.21	20.11	0.00	2.188	5.69	0.00	2.0	98.0	0.0	0.83	0.64	0.80	2.87	3.1	0.002	0.44	0.0	0.03	14.73	0.00	2.212	6.03	0.07	2.4	97.6	0.0	2.33	0.57	0.66	0.84	2.71	15256	1816	8	0	40	0	0	logfile
✔	7LPB	23475	2023-08-15	2021-02-11	3.54	3.01	3.50	3.6	0.012	1.07	0.0	0.06	18.06	0.01	2.226	10.00	0.00	5.7	94.3	0.0	-1.27	0.61	0.75	2.16	3.6	0.002	0.51	0.0	0.04	16.38	0.00	2.293	5.88	0.25	1.7	98.3	0.0	1.02	1.62	0.60	0.69	1.48	18392	2384	8	0	28	0	0	logfile
✔	6X15	21989	2023-08-11	2020-05-18	3.05	3.20	—	3.2	0.009	1.26	0.0	0.05	19.04	0.01	2.281	3.63	0.00	3.1	96.9	0.0	-3.80	0.73	0.87	2.90	3.2	0.002	0.52	0.0	0.04	15.45	0.00	2.161	5.83	0.10	2.8	97.2	0.0	1.71	0.44	0.72	0.88	2.57	10026	1260	9	0	51	9	0	logfile
✔	6XLF	22242	2023-08-13	2020-06-28	3.15	3.29	—	3.2	0.003	0.47	0.0	0.04	12.70	0.00	2.115	6.23	1.20	1.6	98.4	0.0	-4.12	0.75	0.79	2.37	3.2	0.002	0.54	0.0	0.04	15.92	0.00	1.975	9.75	0.33	2.5	97.5	0.0	-0.64	2.49	0.78	0.85	2.67	13653	1680	6	0	6	0	0	logfile

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