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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6MRD | 9196 | 2022-12-19 | 2018-10-12 | 3.82 | 4.44 | — | 3.9 | 0.008 | 0.88 | 0.0 | 0.07 | 10.50 | 0.00 | 1.941 | 43.72 | 0.00 | 9.7 | 90.1 | 0.2 | -2.91 | 0.90 | 0.86 | 1.24 | 3.9 | 0.002 | 0.61 | 1.0 | 0.07 | 11.41 | 0.00 | 1.743 | 56.92 | 0.03 | 8.2 | 91.8 | 0.0 | 0.64 | 0.53 | 0.90 | 0.86 | 1.03 | 34517 | 4396 | 21 | 0 | 14 | 0 | 1477 | logfile |
✔ | 6RDA | 4811 | 2022-12-14 | 2019-04-12 | 3.04 | 3.20 | 2.92 | 3.1 | 0.013 | 1.04 | 0.0 | 0.06 | 13.77 | 0.01 | 2.075 | 3.99 | 0.58 | 5.1 | 94.7 | 0.3 | -5.84 | 0.57 | 0.86 | 3.66 | 3.1 | 0.002 | 0.60 | 0.0 | 0.04 | 15.30 | 0.00 | 2.098 | 7.71 | 0.10 | 3.7 | 96.3 | 0.0 | 1.41 | 1.58 | 0.56 | 0.86 | 2.77 | 19856 | 2597 | 18 | 0 | 1 | 30 | 0 | logfile |
✔ | 6RE5 | 4842 | 2022-12-11 | 2019-04-12 | 3.2 | 3.28 | — | 3.3 | 0.010 | 0.94 | 0.0 | 0.06 | 14.48 | 0.01 | 2.163 | 5.78 | 0.27 | 4.8 | 95.0 | 0.2 | -3.94 | 0.72 | 0.85 | 2.85 | 3.3 | 0.002 | 0.57 | 0.0 | 0.04 | 15.80 | 0.00 | 1.956 | 9.37 | 0.27 | 3.3 | 96.6 | 0.1 | 0.37 | 0.47 | 0.71 | 0.86 | 2.15 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6UX4 | 20929 | 2022-12-13 | 2019-11-06 | 3.5 | 3.60 | — | 3.6 | 0.011 | 0.83 | 0.0 | 0.06 | 13.47 | 0.01 | 2.254 | 3.45 | 0.29 | 3.9 | 96.1 | 0.0 | -4.46 | 0.67 | 0.83 | 2.86 | 3.6 | 0.002 | 0.49 | 0.0 | 0.05 | 14.93 | 0.00 | 2.109 | 6.48 | 0.29 | 2.5 | 97.5 | 0.0 | 0.32 | 1.18 | 0.66 | 0.82 | 2.20 | 13257 | 1776 | 19 | 0 | 24 | 3 | 0 | logfile |
✔ | 6UZA | 20954 | 2022-12-15 | 2019-11-14 | 3.08 | 3.47 | — | 3.4 | 0.008 | 1.05 | 0.0 | 0.06 | 15.69 | 0.01 | 2.338 | 2.59 | 0.00 | 4.1 | 95.9 | 0.0 | -3.92 | 0.70 | 0.87 | 3.55 | 3.4 | 0.002 | 0.49 | 0.0 | 0.04 | 16.00 | 0.00 | 2.268 | 4.82 | 0.18 | 3.4 | 96.6 | 0.0 | 0.74 | 0.41 | 0.67 | 0.88 | 3.02 | 23284 | 2936 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 6TPS | 10544 | 2022-12-12 | 2019-12-14 | 3.54 | 3.65 | — | 3.6 | 0.009 | 0.98 | 1.0 | 0.06 | 17.14 | 0.01 | 2.081 | 6.02 | 0.59 | 8.7 | 91.1 | 0.2 | -5.18 | 0.75 | 0.82 | 2.15 | 3.6 | 0.002 | 0.63 | 0.0 | 0.04 | 18.01 | 0.00 | 2.036 | 9.00 | 0.15 | 5.3 | 94.6 | 0.1 | -1.31 | 0.56 | 0.75 | 0.81 | 1.62 | 50070 | 6031 | 28 | 78 | 8 | 0 | 0 | logfile |
✔ | 6WJ3 | 21687 | 2022-12-12 | 2020-04-11 | 3.9 | 4.46 | 4.05 | 4.2 | 0.009 | 0.50 | 0.0 | 0.04 | 12.83 | 0.00 | 2.210 | 8.27 | 0.00 | 4.7 | 95.2 | 0.1 | -2.80 | 0.85 | 0.76 | 0.95 | 4.2 | 0.002 | 0.66 | 0.0 | 0.04 | 14.95 | 0.00 | 2.194 | 10.27 | 0.54 | 4.7 | 95.3 | 0.0 | -0.30 | 1.73 | 0.86 | 0.77 | 0.77 | 8912 | 1168 | 10 | 1 | 1 | 0 | 0 | logfile |
✔ | 7BZ2 | 30249 | 2022-12-11 | 2020-04-26 | 3.82 | 3.99 | — | 3.9 | 0.004 | 0.68 | 0.0 | 0.05 | 14.75 | 0.00 | 2.101 | 12.42 | 0.00 | 10.2 | 89.8 | 0.0 | -6.04 | 0.73 | 0.79 | 2.10 | 3.9 | 0.002 | 0.64 | 0.0 | 0.04 | 16.48 | 0.00 | 2.125 | 8.60 | 0.68 | 4.1 | 95.9 | 0.0 | -2.49 | 1.58 | 0.72 | 0.78 | 1.16 | 7393 | 978 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6LGP | 0882 | 2022-12-14 | 2019-12-05 | 3.3 | 3.43 | 3.24 | 3.4 | 0.008 | 0.85 | 0.0 | 0.05 | 16.78 | 0.01 | 2.065 | 8.51 | 0.00 | 11.7 | 88.2 | 0.2 | -4.33 | 0.67 | 0.82 | 2.77 | 3.4 | 0.002 | 0.59 | 0.0 | 0.04 | 16.87 | 0.00 | 2.193 | 8.35 | 0.27 | 7.6 | 92.4 | 0.0 | -0.43 | 0.62 | 0.70 | 0.84 | 1.51 | 21212 | 2488 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 6VRC | 21367 | 2022-12-12 | 2020-02-07 | 3.2 | 3.32 | — | 3.3 | 0.010 | 1.27 | 2.0 | 0.08 | 15.90 | 0.01 | 2.170 | 11.64 | 3.70 | 7.7 | 92.3 | 0.0 | -4.83 | 0.79 | 0.82 | 2.87 | 3.3 | 0.002 | 0.63 | 0.0 | 0.04 | 16.94 | 0.00 | 2.168 | 5.87 | 0.42 | 5.4 | 94.6 | 0.0 | -0.42 | 0.89 | 0.80 | 0.86 | 2.18 | 9429 | 1007 | 2 | 51 | 0 | 0 | 0 | logfile |
✔ | 6WHC | 21671 | 2022-12-12 | 2020-04-07 | 3.4 | 3.86 | 3.36 | 3.7 | 0.004 | 0.79 | 0.0 | 0.05 | 14.51 | 0.01 | 2.238 | 6.62 | 0.00 | 4.0 | 96.0 | 0.0 | -4.67 | 0.83 | 0.82 | 1.97 | 3.7 | 0.002 | 0.64 | 0.0 | 0.04 | 15.76 | 0.00 | 2.153 | 10.65 | 0.11 | 2.8 | 97.2 | 0.0 | -0.40 | 1.02 | 0.82 | 0.83 | 1.69 | 8709 | 1126 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U5P | 20652 | 2022-12-13 | 2019-08-28 | 3.3 | 3.44 | — | 3.4 | 0.006 | 0.75 | 0.0 | 0.05 | 14.37 | 0.00 | 2.236 | 3.96 | 0.43 | 4.4 | 95.6 | 0.0 | -3.37 | 0.70 | 0.83 | 2.56 | 3.4 | 0.002 | 0.49 | 0.0 | 0.05 | 16.15 | 0.00 | 2.100 | 5.40 | 0.50 | 2.8 | 97.2 | 0.0 | 0.25 | 0.46 | 0.65 | 0.83 | 2.09 | 13308 | 1776 | 24 | 0 | 24 | 8 | 0 | logfile |
✔ | 6U68 | 20662 | 2022-12-12 | 2019-08-29 | 4.5 | 4.54 | — | 4.5 | 0.006 | 0.90 | 0.0 | 0.06 | 4.27 | 0.00 | 2.419 | 0.52 | 0.00 | 2.6 | 97.3 | 0.1 | -3.82 | 0.71 | 0.71 | — | 4.5 | 0.002 | 0.74 | 0.0 | 0.05 | 4.16 | 0.00 | 2.318 | 2.42 | 0.00 | 3.8 | 96.2 | 0.0 | -0.64 | 1.80 | 0.77 | 0.81 | — | 10489 | 2133 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VX5 | 21430 | 2022-12-13 | 2020-02-21 | 3.03 | 3.58 | — | 3.5 | 0.006 | 0.80 | 0.0 | 0.05 | 14.27 | 0.00 | 2.348 | 4.97 | 0.00 | 3.3 | 96.7 | 0.0 | -6.15 | 0.72 | 0.84 | 2.92 | 3.5 | 0.002 | 0.64 | 0.0 | 0.04 | 16.39 | 0.00 | 2.266 | 8.72 | 0.57 | 1.9 | 98.1 | 0.0 | -0.40 | 1.27 | 0.67 | 0.80 | 2.31 | 13056 | 1575 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6VX6 | 21431 | 2022-12-13 | 2020-02-21 | 3.0 | 3.24 | — | 3.2 | 0.005 | 0.82 | 0.0 | 0.05 | 14.09 | 0.00 | 2.260 | 4.77 | 0.94 | 1.9 | 98.1 | 0.0 | -5.69 | 0.76 | 0.87 | 3.72 | 3.2 | 0.002 | 0.60 | 0.0 | 0.04 | 16.39 | 0.00 | 2.076 | 8.51 | 1.38 | 1.6 | 98.4 | 0.0 | 0.89 | 0.98 | 0.77 | 0.89 | 3.22 | 15061 | 1830 | 10 | 0 | 6 | 0 | 0 | logfile |
✔ | 7A95 | 11685 | 2022-12-16 | 2020-09-01 | 4.3 | 4.83 | 4.39 | 4.3 | 0.003 | 0.47 | 2.0 | 0.04 | 5.77 | 0.00 | 2.226 | 3.56 | 0.90 | 11.0 | 89.0 | 0.0 | -4.57 | 0.87 | 0.78 | — | 4.4 | 0.002 | 0.60 | 0.0 | 0.04 | 9.01 | 0.00 | 2.143 | 7.98 | 0.00 | 3.6 | 96.4 | 0.1 | -0.75 | 1.74 | 0.89 | 0.84 | — | 29887 | 3794 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VYB | 21457 | 2022-12-14 | 2020-02-25 | 3.2 | 3.72 | — | 3.6 | 0.014 | 1.36 | 1.0 | 0.09 | 10.35 | 0.01 | 2.299 | 0.69 | 0.13 | 2.4 | 97.5 | 0.1 | 0.50 | 0.77 | 0.78 | 2.94 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 13.34 | 0.00 | 2.077 | 5.66 | 0.13 | 2.9 | 97.1 | 0.0 | 0.50 | 0.64 | 0.76 | 0.79 | 2.72 | 22365 | 2875 | 18 | 0 | 59 | 0 | 0 | logfile |
✔ | 6X3S | 22031 | 2022-12-13 | 2020-05-21 | 3.12 | 3.37 | 3.20 | 3.3 | 0.006 | 0.63 | 0.0 | 0.05 | 13.68 | 0.01 | 2.119 | 9.61 | 0.05 | 4.3 | 95.7 | 0.0 | -2.03 | 0.76 | 0.85 | 3.77 | 3.3 | 0.002 | 0.56 | 0.0 | 0.04 | 15.54 | 0.00 | 2.167 | 8.43 | 0.42 | 3.3 | 96.7 | 0.0 | 0.18 | 0.52 | 0.74 | 0.88 | 3.32 | 17407 | 2121 | 17 | 0 | 23 | 0 | 0 | logfile |
✔ | 6XEY | 22156 | 2022-12-16 | 2020-06-14 | 3.25 | 3.61 | 3.09 | 2.1 | 0.005 | 0.81 | 1.0 | 0.05 | 12.58 | 0.01 | 2.265 | 3.65 | 0.26 | 5.1 | 94.8 | 0.1 | -1.87 | 0.88 | 0.83 | 3.34 | 2.1 | 0.002 | 0.57 | 0.0 | 0.04 | 13.58 | 0.00 | 2.114 | 6.76 | 0.11 | 4.3 | 95.6 | 0.1 | -0.44 | 0.31 | 0.89 | 0.85 | 2.42 | 28482 | 3788 | 24 | 0 | 63 | 0 | 0 | logfile |
✔ | 6X0V | 21985 | 2022-12-11 | 2020-05-17 | 4.5 | 4.37 | — | 4.4 | 0.003 | 0.62 | 1.0 | 0.04 | 11.58 | 0.00 | 2.285 | 15.16 | 4.48 | 3.5 | 96.0 | 0.5 | -2.45 | 0.40 | 0.74 | — | 4.4 | 0.002 | 0.46 | 0.0 | 0.04 | 13.09 | 0.00 | 2.230 | 19.17 | 0.00 | 6.0 | 94.0 | 0.0 | 2.59 | 1.22 | 0.40 | 0.75 | — | 1384 | 211 | 4 | 0 | 0 | 0 | 62 | logfile |