Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S6V	10107	2023-04-22	2019-07-03	3.5	3.70	—	3.5	0.009	0.91	0.0	0.06	15.37	0.01	1.827	6.25	0.24	7.8	92.2	0.0	-3.61	0.86	0.86	2.78	3.5	0.002	0.56	0.0	0.04	16.22	0.00	1.963	8.76	0.24	5.1	94.9	0.0	-0.08	0.45	0.86	0.86	2.90	11820	1498	8	0	8	0	0	logfile
✔	8A2U	15107	2023-04-23	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.59	0.0	0.04	16.64	0.00	2.155	3.93	0.52	1.3	98.7	0.0	1.13	1.06	0.73	0.88	6.00	15022	1830	15	0	15	512	0	logfile
✔	7oo8	13007	2023-04-23	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.002	0.48	0.0	0.04	14.80	0.00	2.290	9.85	0.20	1.2	98.8	0.0	2.54	0.44	0.65	0.79	2.22	13923	1827	7	0	0	0	0	logfile
✔	8E28	27828	2023-04-20	2022-08-14	3.1	3.26	3.15	3.2	0.004	0.83	0.0	0.05	16.45	0.01	2.316	3.83	0.00	1.5	98.5	0.0	-1.72	0.75	0.85	3.17	3.2	0.002	0.48	0.0	0.04	17.09	0.00	2.204	5.32	0.49	1.5	98.5	0.0	0.26	0.73	0.76	0.87	2.64	5789	690	2	15	0	0	0	logfile
✔	7SV7	25445	2023-04-21	2021-11-18	3.8	3.26	—	3.9	0.004	1.02	0.0	0.04	12.31	0.00	2.003	1.99	0.69	2.2	97.8	0.0	-0.82	0.60	0.81	2.35	3.9	0.002	0.55	0.0	0.04	15.41	0.00	1.999	5.52	0.30	2.5	97.5	0.0	1.05	0.59	0.61	0.81	1.47	9673	1173	3	0	32	0	0	logfile
✔	7KDJ	22824	2023-04-26	2020-10-08	3.49	4.11	—	3.8	0.013	1.69	1.0	0.10	12.36	0.01	1.477	0.25	0.49	6.4	93.2	0.4	-0.75	0.80	0.79	2.84	3.8	0.002	0.59	0.0	0.04	13.66	0.00	2.204	5.88	0.13	3.6	96.4	0.0	0.57	0.54	0.84	0.84	2.15	22365	2875	18	0	59	0	0	logfile
✔	8DTM	27705	2023-04-22	2022-07-26	3.5	3.58	3.45	3.6	0.003	0.56	0.0	0.04	16.33	0.00	2.132	7.74	0.41	5.8	94.2	0.0	-0.79	0.71	0.80	2.96	3.6	0.002	0.52	0.0	0.04	16.81	0.00	2.129	7.19	0.55	5.4	94.6	0.0	-0.64	0.25	0.71	0.81	2.59	6498	802	3	0	0	0	0	logfile
✔	7SK5	25173	2023-04-23	2021-10-19	4.0	4.30	—	4.2	0.004	0.63	0.0	0.06	13.93	0.00	1.998	6.42	0.00	4.7	95.3	0.0	0.50	0.69	0.81	—	4.2	0.002	0.54	0.0	0.04	15.66	0.00	1.979	10.91	0.63	4.9	95.1	0.0	-0.06	0.47	0.69	0.80	—	14160	897	7	0	7	0	6928	logfile
✔	7TYH	26179	2023-04-21	2022-02-13	3.3	3.26	3.31	3.4	0.003	0.61	0.0	0.04	12.28	0.01	2.274	4.73	1.05	1.9	98.1	0.0	-4.28	0.61	0.76	2.36	3.4	0.002	0.56	0.0	0.04	15.01	0.00	2.086	8.21	0.00	2.0	98.0	0.0	-0.62	0.50	0.59	0.78	2.28	9492	1246	7	0	1	0	0	logfile
✔	7LWQ	23554	2023-04-25	2021-03-01	3.44	3.73	—	3.6	0.013	1.77	3.0	0.10	13.84	0.01	2.519	0.05	1.18	6.6	93.1	0.4	-1.34	0.77	0.79	2.74	3.6	0.002	0.60	0.0	0.04	15.04	0.00	2.183	6.77	0.24	3.8	96.2	0.0	0.36	1.27	0.77	0.80	2.05	19273	2425	7	0	29	0	0	logfile
✔	7ZJ8	14744	2023-04-22	2022-04-08	3.1	2.96	3.14	3.1	0.014	1.87	0.0	0.10	15.10	0.02	1.471	1.49	0.23	5.3	94.7	0.0	-2.59	0.80	0.87	3.61	3.1	0.002	0.57	0.0	0.04	15.89	0.00	2.223	2.64	0.00	1.8	98.2	0.0	0.55	1.21	0.80	0.86	3.27	12342	1482	18	0	51	0	0	logfile
✔	6RiU	4898	2023-04-19	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.64	0.0	0.03	15.97	0.00	2.064	12.47	0.00	3.9	96.1	0.0	-0.16	1.43	0.61	0.75	0.76	2882	182	2	0	0	0	1430	logfile
✔	7T9B	25755	2023-04-25	2021-12-18	3.72	4.06	3.76	3.9	0.021	1.77	0.0	0.13	11.10	0.01	2.289	1.04	0.98	3.7	95.6	0.7	0.40	0.81	0.86	2.63	3.9	0.002	0.64	0.0	0.04	14.01	0.00	2.138	7.07	0.22	4.1	95.9	0.0	0.00	1.38	0.80	0.85	2.29	21592	2595	42	0	101	0	0	logfile
✔	6L54	0837	2023-04-26	2019-10-22	3.43	3.58	—	3.5	0.002	0.49	0.0	0.03	7.60	0.00	1.978	61.71	0.79	8.8	91.2	0.0	-3.87	0.77	0.72	1.74	3.5	0.002	0.61	0.0	0.04	13.82	0.00	1.920	66.76	0.39	10.3	89.7	0.0	-1.37	0.76	0.80	0.77	1.44	20387	2608	3	0	2	0	857	logfile
✔	6T0S	10358	2023-04-23	2019-10-03	3.04	3.11	3.10	3.1	0.003	0.60	0.0	0.04	13.17	0.01	2.109	4.37	4.69	2.8	97.2	0.0	-3.21	0.68	0.86	3.59	3.1	0.002	0.52	0.0	0.04	15.00	0.00	1.972	9.02	0.20	1.9	98.1	0.0	0.58	0.54	0.69	0.88	3.15	14651	1700	6	43	2	0	0	logfile
✔	7RPH	24614	2023-04-20	2021-08-03	2.5	2.68	2.59	2.7	0.017	1.89	4.0	0.12	14.72	0.01	1.952	2.03	0.61	2.1	97.9	0.0	-0.70	0.53	0.76	4.93	2.7	0.002	0.63	0.0	0.04	16.11	0.00	2.195	6.19	2.21	1.6	98.4	0.0	2.13	1.30	0.66	0.85	3.03	8573	926	1	0	36	86	0	logfile
✔	6CNM	7537	2023-04-22	2018-03-08	3.4	3.51	—	3.5	0.010	1.11	0.0	0.06	10.53	0.01	2.331	1.47	0.00	4.3	95.7	0.0	-4.29	0.64	0.84	3.41	3.5	0.002	0.53	0.0	0.04	13.55	0.00	2.202	3.43	0.09	2.9	97.1	0.0	2.24	0.56	0.63	0.85	2.35	12541	1700	12	0	17	0	0	logfile
✔	7TYV	26195	2023-04-24	2022-02-14	2.8	2.28	2.98	2.1	0.005	0.71	0.0	0.05	13.45	0.00	2.081	7.27	0.00	5.0	95.0	0.0	-0.19	0.75	0.72	2.31	2.0	0.002	0.61	0.0	0.04	16.09	0.00	2.103	6.71	2.29	4.1	95.9	0.0	-0.13	0.33	0.77	0.76	2.18	17306	2114	30	0	58	0	0	logfile
✔	8E5L	27914	2023-04-25	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.68	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.002	0.65	0.0	0.04	12.02	0.00	1.046	16.48	0.00	2.4	97.6	0.0	0.49	1.33	0.89	0.83	—	20058	2502	13	9	18	0	0	logfile
✔	6VKT	21229	2023-04-27	2020-01-22	2.72	3.21	—	3.1	0.006	0.80	0.0	0.17	13.64	0.01	1.442	19.82	0.00	2.6	97.4	0.0	-1.19	0.73	0.83	2.87	3.1	0.002	0.68	0.0	0.07	15.28	0.00	1.977	6.01	1.80	2.7	97.3	0.0	1.72	0.55	0.69	0.82	2.39	24331	3122	6	0	24	0	0	logfile

• ← previous
• Page 4 of 372
• next →