Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UGF	20763	2022-07-04	2019-09-26	4.2	4.51	—	4.2	0.008	1.11	0.0	0.05	13.93	0.01	2.046	4.71	0.30	6.0	93.9	0.1	-4.55	0.80	0.72	—	4.3	0.002	0.59	0.0	0.04	13.19	0.00	1.955	7.70	0.00	4.1	95.9	0.0	-0.21	0.62	0.84	0.81	—	13874	1862	12	0	9	0	0	logfile
✔	6PWN	20508	2022-07-04	2019-07-23	3.1	3.65	2.95	3.4	0.008	0.86	0.0	0.04	14.34	0.00	2.276	8.66	0.44	3.5	96.5	0.0	-2.16	0.80	0.84	2.55	3.4	0.002	0.58	0.0	0.04	15.27	0.00	2.270	6.93	0.13	3.2	96.8	0.0	1.47	1.21	0.81	0.85	1.95	15379	1960	14	0	14	0	0	logfile
✔	7VCT	31895	2022-07-07	2021-09-04	3.21	3.41	—	3.4	0.007	0.94	0.0	0.05	9.64	0.01	2.132	3.51	0.00	4.4	95.6	0.0	-3.08	0.77	0.82	2.62	3.3	0.002	0.57	0.0	0.04	13.13	0.00	2.026	7.02	0.03	2.6	97.4	0.0	0.73	1.30	0.77	0.84	1.95	35694	4506	12	0	18	0	0	logfile
✔	7TYi	26180	2022-07-03	2022-02-13	3.3	3.44	3.19	3.5	0.004	0.56	0.0	0.04	12.86	0.00	2.217	6.71	1.50	1.6	98.4	0.0	-2.88	0.66	0.77	2.71	3.5	0.002	0.52	0.0	0.04	14.94	0.00	2.116	8.04	0.30	2.2	97.8	0.0	0.45	0.52	0.65	0.82	2.32	9413	1154	6	0	13	0	0	logfile
✔	7V99	31811	2022-07-04	2021-08-24	3.54	4.33	—	3.3	0.002	0.53	0.0	0.03	14.51	0.00	2.258	7.89	0.10	5.9	94.1	0.1	-3.21	0.79	0.68	0.93	3.3	0.002	0.60	0.0	0.03	15.74	0.00	2.204	11.58	0.40	5.9	94.1	0.1	-0.13	1.37	0.82	0.75	0.69	14582	1170	5	249	0	0	0	logfile
✔	7WNQ	32633	2022-07-03	2022-01-19	2.7	2.91	2.72	3.0	0.012	1.20	6.0	0.07	9.17	0.01	2.155	1.80	0.63	3.6	96.4	0.0	-5.53	0.68	0.86	4.76	3.0	0.002	0.59	0.0	0.04	14.24	0.00	2.303	3.77	0.74	2.1	97.9	0.0	2.12	1.25	0.67	0.86	3.58	8847	1104	3	0	0	0	0	logfile
✔	7TT7	26113	2022-07-03	2022-01-31	4.8	5.05	—	4.9	0.003	0.84	0.0	0.05	10.50	0.00	2.205	5.04	0.00	1.3	98.7	0.0	0.94	0.66	0.63	—	4.8	0.002	0.61	0.0	0.04	11.84	0.00	1.874	10.23	0.00	2.7	97.3	0.0	-0.53	1.60	0.70	0.73	—	13296	867	5	0	0	0	6468	logfile
✔	7N4T	24177	2022-07-03	2021-06-04	2.4	3.03	2.47	2.8	0.004	0.90	1.0	0.05	14.86	0.00	2.198	7.06	0.14	6.0	94.0	0.0	0.31	0.81	0.86	4.16	2.8	0.002	0.59	0.0	0.04	16.51	0.00	2.143	6.48	0.94	5.4	94.6	0.0	-0.01	1.89	0.76	0.86	3.85	12887	1603	14	0	7	0	0	logfile
✔	7S4X	24838	2022-07-04	2021-09-09	2.76	3.30	—	3.1	0.006	0.60	0.0	0.04	17.12	0.00	1.878	7.16	0.00	4.0	96.0	0.0	0.02	0.87	0.89	4.31	3.1	0.002	0.49	0.0	0.04	17.49	0.00	1.987	7.88	0.66	3.0	97.0	0.0	1.08	0.32	0.83	0.88	3.46	14491	1354	10	161	5	7	0	logfile
✔	7TT0	26106	2022-07-04	2022-01-31	4.3	4.51	—	4.4	0.005	0.84	0.0	0.05	10.42	0.00	2.151	3.16	0.00	1.2	98.8	0.0	1.30	0.68	0.75	—	4.4	0.002	0.56	0.0	0.04	12.24	0.00	1.955	8.73	0.00	3.0	97.0	0.0	0.77	1.10	0.69	0.77	—	14884	962	5	0	0	0	7253	logfile
✔	7T38	25651	2022-07-04	2021-12-07	3.8	4.03	—	4.0	0.004	0.78	0.0	0.04	13.60	0.01	2.319	4.29	0.39	3.1	96.9	0.0	-1.24	0.68	0.81	1.54	4.0	0.002	0.53	0.0	0.03	15.47	0.00	2.252	5.73	0.24	3.8	96.2	0.0	1.61	1.56	0.70	0.82	1.30	19404	2432	4	0	0	0	0	logfile
✔	7VNM	32042	2022-07-04	2021-10-11	2.86	2.50	—	2.7	0.021	1.92	0.0	0.04	16.44	0.05	2.100	8.61	0.34	1.5	98.5	0.0	2.54	0.63	0.86	4.06	2.6	0.002	0.65	0.0	0.04	17.12	0.00	2.156	7.59	1.36	1.3	98.7	0.0	2.77	0.94	0.62	0.87	3.93	20588	2112	55	0	65	0	0	logfile
✔	7RXB	24727	2022-07-03	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	14.60	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.002	0.53	0.0	0.04	14.50	0.00	2.378	2.10	0.25	5.3	94.7	0.0	-0.04	0.27	0.65	0.89	3.11	8506	1096	4	0	8	0	0	logfile
✔	7RXA	24726	2022-07-03	2021-08-22	3.08	3.22	—	3.3	0.006	1.11	0.0	0.05	15.07	0.01	2.381	1.32	0.00	5.4	94.6	0.0	-4.42	0.67	0.84	2.99	3.3	0.002	0.55	0.0	0.04	13.77	0.00	2.241	2.87	0.14	4.1	95.9	0.0	0.82	0.32	0.67	0.85	2.84	8694	1156	4	0	8	0	0	logfile
✔	7S4V	24835	2022-07-03	2021-09-09	3.28	3.87	—	3.7	0.003	0.54	0.0	0.04	17.44	0.00	2.202	4.97	0.00	5.0	95.0	0.0	-1.46	0.80	0.80	2.24	3.7	0.002	0.52	0.0	0.03	18.46	0.00	2.235	5.36	0.00	4.4	95.6	0.0	-0.38	0.56	0.85	0.85	2.01	12215	1122	4	145	0	0	0	logfile
✔	7T11	25587	2022-07-03	2021-11-30	2.7	2.94	—	3.0	0.004	0.61	2.0	0.04	10.76	0.00	2.107	3.59	0.27	2.4	97.6	0.0	0.96	0.60	0.74	3.90	3.0	0.002	0.49	2.0	0.04	13.65	0.00	2.230	3.78	0.53	2.0	98.0	0.0	1.51	0.42	0.62	0.78	3.02	8151	1132	6	0	2	0	0	logfile
✔	7F1o	31421	2022-07-03	2021-06-09	3.13	3.74	—	3.7	0.011	1.08	3.0	0.08	15.20	0.01	2.086	11.95	1.81	4.0	96.0	0.0	-2.35	0.63	0.77	2.10	3.7	0.002	0.60	0.0	0.04	16.00	0.00	2.137	9.44	0.56	2.0	98.0	0.0	0.84	0.53	0.62	0.77	2.23	8208	1035	7	1	2	0	0	logfile
✔	7T10	25586	2022-07-03	2021-11-30	2.5	2.70	—	2.8	0.005	1.00	0.0	0.06	12.36	0.01	2.235	3.92	0.73	3.0	97.0	0.0	0.62	0.64	0.83	4.77	2.8	0.002	0.57	0.0	0.04	13.98	0.00	2.271	2.81	1.10	2.8	97.2	0.0	1.55	0.91	0.65	0.84	3.75	8429	1146	9	0	0	5	0	logfile
✔	6PKV	20367	2022-07-06	2019-06-30	4.3	4.49	—	4.3	0.005	0.86	0.0	0.05	8.98	0.01	2.311	3.59	0.00	4.7	95.3	0.0	-3.45	0.67	0.78	—	4.3	0.002	0.56	0.0	0.04	9.94	0.00	2.255	6.39	0.00	4.1	95.9	0.0	1.40	1.92	0.67	0.77	—	28284	4260	4	0	88	0	0	logfile
✔	6PKW	20368	2022-07-05	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.19	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.002	0.56	0.0	0.04	9.71	0.00	2.189	6.89	0.00	4.2	95.8	0.0	2.08	1.62	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile

• ← previous
• Page 4 of 392
• next →