Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UW6	20918	2022-04-06	2019-11-04	3.66	3.79	—	3.8	0.015	1.24	0.0	0.07	16.71	0.01	2.299	5.68	0.00	8.4	91.6	0.0	-4.85	0.70	0.84	2.14	3.8	0.002	0.62	0.0	0.04	17.32	0.00	2.188	7.53	0.42	6.0	94.0	0.0	0.52	0.59	0.69	0.83	1.59	20072	2408	8	0	20	0	0	logfile
✔	6VZ1	21481	2022-04-04	2020-02-27	3.2	3.35	—	3.4	0.014	1.24	0.0	0.06	19.73	0.01	1.864	10.74	0.00	12.0	88.0	0.0	-4.38	0.59	0.86	3.07	3.4	0.002	0.61	0.0	0.04	17.87	0.00	2.201	8.23	0.70	5.5	94.5	0.0	-0.34	1.29	0.55	0.84	2.64	7112	822	4	0	6	0	0	logfile
✔	6iFK	9653	2022-04-06	2018-09-20	3.2	3.32	—	3.3	0.009	1.20	1.0	0.06	12.74	0.01	2.046	6.33	1.01	10.7	89.0	0.3	-4.87	0.74	0.82	3.58	3.3	0.002	0.64	0.0	0.04	16.09	0.00	2.023	12.40	0.26	9.3	90.6	0.0	-1.88	0.71	0.75	0.83	2.67	19448	2256	11	67	5	0	0	logfile
✔	6GYN	0093	2022-04-06	2018-06-30	3.4	3.66	3.52	3.6	0.008	0.85	0.0	0.05	9.32	0.01	2.273	3.08	0.00	4.7	95.3	0.0	-2.56	0.66	0.83	3.51	3.6	0.002	0.54	0.0	0.04	13.29	0.00	2.264	7.43	0.17	2.6	97.4	0.0	2.33	0.49	0.65	0.83	2.26	16932	1980	8	0	36	0	0	logfile
✔	6DMR	7965	2022-04-06	2018-06-05	3.9	4.25	—	4.2	0.005	0.91	0.0	0.05	10.34	0.01	2.280	3.54	0.00	4.2	95.8	0.0	-4.22	0.62	0.70	1.82	4.1	0.002	0.62	0.0	0.04	14.97	0.00	2.278	6.37	0.10	3.1	96.9	0.0	-0.45	1.74	0.75	0.87	1.48	19412	2424	4	0	0	0	0	logfile
✔	6QPi	4614	2022-04-04	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	6C96	7434	2022-04-05	2018-01-25	3.4	3.54	—	3.5	0.009	1.04	0.0	0.06	10.46	0.01	2.277	3.50	0.30	5.1	94.9	0.0	-4.38	0.58	0.82	3.11	3.5	0.002	0.66	0.0	0.04	15.49	0.00	2.162	7.57	0.46	4.3	95.7	0.0	1.10	0.76	0.59	0.83	1.86	12090	1446	4	0	8	0	0	logfile
✔	6o0Z	0585	2022-04-05	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.52	0.0	0.03	16.62	0.00	2.157	4.96	0.14	5.7	94.3	0.0	0.16	0.32	0.85	0.88	3.28	11912	1288	4	135	0	0	0	logfile
✔	6DMW	7967	2022-04-06	2018-06-05	4.4	4.49	—	4.4	0.006	1.02	0.0	0.05	11.36	0.01	2.253	6.61	0.18	4.0	96.0	0.0	-3.38	0.59	0.66	—	4.4	0.002	0.68	0.0	0.04	13.04	0.00	2.175	8.26	0.00	2.7	97.3	0.0	0.60	0.94	0.71	0.84	—	20546	2562	6	0	3	0	0	logfile
✔	6oVH	20212	2022-04-05	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.002	0.72	0.0	0.04	18.70	0.00	2.068	2.87	0.19	0.2	99.8	0.0	3.27	0.99	0.77	0.88	3.42	10895	1272	36	0	68	171	0	logfile
✔	6oT2	20192	2022-04-08	2019-05-02	4.1	4.25	4.02	4.1	0.009	0.87	0.0	0.05	8.41	0.01	2.066	6.19	0.00	7.3	92.7	0.0	-2.26	0.71	0.76	—	4.1	0.002	0.52	0.0	0.03	10.42	0.00	2.135	7.27	0.00	5.1	94.9	0.0	1.85	1.72	0.71	0.76	—	32311	2444	4	0	56	0	14975	logfile
✔	6PQP	20450	2022-04-06	2019-07-09	3.06	3.46	3.03	3.4	0.012	1.29	0.0	0.23	17.05	0.01	2.132	8.72	0.19	4.3	95.7	0.0	-3.28	0.74	0.82	3.00	3.4	0.002	0.56	0.0	0.04	16.66	0.00	2.128	6.14	0.24	2.8	97.2	0.0	1.87	2.26	0.74	0.85	2.11	20492	2460	8	0	36	0	0	logfile
✔	6NR4	0489	2022-04-06	2019-01-22	4.3	4.39	4.24	4.3	0.006	0.93	0.0	0.05	9.96	0.01	2.319	3.34	0.39	4.7	95.3	0.0	-3.24	0.60	0.77	—	4.3	0.002	0.58	0.0	0.04	12.17	0.00	2.242	7.66	0.00	3.3	96.7	0.0	2.35	0.80	0.60	0.77	—	23264	3036	4	0	180	0	0	logfile
✔	6PUU	20482	2022-04-08	2019-07-18	3.7	4.09	—	3.7	0.006	0.96	0.0	0.05	14.47	0.01	2.302	5.02	1.13	5.4	94.4	0.2	-3.50	0.75	0.84	1.62	3.7	0.002	0.59	0.0	0.04	14.86	0.00	2.190	6.53	0.23	4.9	95.1	0.1	0.37	0.42	0.75	0.83	1.30	38492	5236	8	0	8	0	0	logfile
✔	6Si8	10208	2022-04-07	2019-08-09	3.4	3.84	—	3.8	0.010	1.11	0.0	0.07	14.59	0.01	2.250	3.94	2.45	8.3	91.3	0.4	-3.81	0.70	0.76	3.61	3.8	0.002	0.62	0.0	0.04	15.10	0.00	1.980	6.53	0.42	3.5	96.5	0.1	-0.90	0.84	0.74	0.81	3.40	26542	1700	8	0	4	0	13086	logfile
✔	6E7Y	9001	2022-04-05	2018-07-27	3.57	3.68	—	3.7	0.005	0.81	0.0	0.05	10.18	0.01	2.364	2.19	0.00	7.1	92.9	0.0	-5.91	0.63	0.80	2.96	3.7	0.002	0.68	0.0	0.04	14.29	0.00	2.317	6.14	0.47	4.8	95.2	0.0	-0.54	1.34	0.63	0.82	2.62	15508	1900	8	0	4	0	0	logfile
✔	6R8U	4761	2022-04-07	2019-04-02	3.0	3.51	—	3.4	0.011	1.28	4.0	0.08	15.14	0.01	2.242	7.03	3.60	8.6	91.4	0.0	-3.30	0.51	0.65	4.68	3.4	0.002	0.62	0.0	0.04	16.13	0.01	2.038	6.29	1.32	2.6	97.4	0.0	-0.69	1.27	0.65	0.80	4.47	26712	1700	8	0	4	0	13176	logfile
✔	6V8o	21107	2022-04-07	2019-12-11	3.07	3.27	3.04	3.3	0.004	0.55	0.0	0.04	11.21	0.00	2.149	6.74	2.31	6.9	93.0	0.1	-1.57	0.67	0.77	1.92	3.3	0.002	0.57	0.0	0.04	14.94	0.00	2.089	7.68	0.25	5.0	95.0	0.0	1.52	2.89	0.70	0.82	1.71	25103	3012	23	0	145	0	0	logfile
✔	6W98	21580	2022-04-05	2020-03-22	2.9	3.47	2.92	3.3	0.010	0.86	0.0	0.05	12.86	0.01	1.990	2.52	0.00	4.4	95.6	0.1	-4.30	0.67	0.84	3.77	3.3	0.002	0.64	0.0	0.04	14.61	0.00	1.365	6.88	1.53	3.6	96.4	0.0	0.07	0.50	0.65	0.84	2.62	10317	1389	3	0	4	1	0	logfile
✔	7JK3	22360	2022-04-06	2020-07-27	3.4	4.04	3.41	3.5	0.005	0.87	0.0	0.05	17.58	0.01	1.709	3.67	0.18	3.1	96.9	0.0	-3.87	0.89	0.87	2.19	3.5	0.002	0.58	0.0	0.04	18.19	0.00	1.985	7.23	0.05	2.7	97.3	0.0	1.50	1.32	0.90	0.89	1.82	21661	2528	13	66	8	0	0	logfile

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