Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Li3	23359	2021-11-02	2021-01-26	3.8	4.19	—	3.9	0.004	0.76	0.0	0.05	13.57	0.00	2.135	15.66	0.00	12.0	88.0	0.0	-5.09	0.84	0.80	1.84	3.9	0.002	0.64	0.0	0.04	15.11	0.00	2.124	10.77	0.06	7.5	92.5	0.0	-2.02	1.04	0.84	0.80	1.46	14180	1795	1	1	1	0	0	logfile
✔	7EJ4	30669	2021-11-04	2021-04-01	3.6	4.33	—	3.9	0.002	0.57	0.0	0.05	13.31	0.00	2.132	9.96	0.00	5.9	94.0	0.1	-1.14	0.84	0.80	1.79	3.9	0.002	0.54	0.0	0.04	14.82	0.00	2.133	8.80	0.09	5.3	94.6	0.1	-0.61	0.37	0.84	0.81	1.56	30040	3725	39	0	75	0	0	logfile
✔	6ZU1	11426	2021-11-07	2020-07-21	3.0	2.64	3.07	2.9	0.013	1.11	0.0	0.06	16.30	0.02	1.042	6.42	5.10	5.8	93.5	0.7	-2.13	0.81	0.86	2.82	3.0	0.002	0.63	0.0	0.03	15.69	0.01	1.227	10.14	3.15	3.6	96.4	0.0	-0.03	2.18	0.81	0.87	2.19	172846	8886	79	4793	491	0	0	logfile
✔	7NCA	12264	2021-11-02	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.50	0.0	0.05	13.14	0.00	2.541	0.48	0.00	4.9	95.1	0.0	-2.81	0.78	0.70	0.85	3.29	10428	732	12	0	0	0	5376	logfile
✔	6RBG	4798	2021-11-03	2019-04-10	3.0	3.55	—	3.4	0.004	0.89	0.0	0.05	14.50	0.00	2.407	3.44	0.38	2.0	98.0	0.0	-6.39	0.67	0.80	3.37	3.4	0.002	0.62	0.0	0.04	17.28	0.00	2.200	5.04	1.38	1.5	98.5	0.0	0.59	0.59	0.72	0.84	2.81	19336	2464	8	0	0	0	0	logfile
✔	7CRC	30450	2021-11-05	2020-08-13	3.02	3.95	—	3.4	0.006	0.84	2.0	0.05	12.98	0.00	2.167	11.57	1.04	8.4	91.3	0.2	-1.56	0.90	0.85	2.57	3.4	0.002	0.59	0.0	0.04	14.19	0.00	2.032	9.33	0.29	6.1	93.6	0.2	-0.44	0.43	0.90	0.86	1.80	43168	5388	12	0	6	0	0	logfile
✔	7DTT	30853	2021-11-02	2021-01-06	3.8	3.66	—	3.3	0.010	0.98	0.0	0.07	14.11	0.01	2.230	5.19	0.00	9.7	90.1	0.1	-4.29	0.72	0.82	2.94	3.3	0.002	0.53	0.0	0.05	14.85	0.00	2.183	5.86	0.00	4.5	95.5	0.0	-0.36	0.47	0.72	0.81	1.71	11204	1558	8	0	22	0	0	logfile
✔	6QSU	4629	2021-11-04	2019-02-22	2.4	2.64	2.56	2.6	0.006	0.64	0.0	0.05	13.49	0.00	1.918	4.58	0.61	4.6	95.4	0.0	0.27	0.81	0.87	4.68	2.6	0.002	0.53	0.0	0.04	16.58	0.00	1.942	5.58	0.77	3.1	96.9	0.0	0.35	1.16	0.72	0.86	4.15	75758	9684	60	0	36	1178	0	logfile
✔	6L7E	0843	2021-11-05	2019-11-01	3.2	3.28	—	3.2	0.004	0.78	0.0	0.05	8.54	0.01	2.217	3.24	0.05	3.3	96.7	0.0	-4.72	0.78	0.85	3.48	3.2	0.002	0.55	0.0	0.04	14.27	0.00	2.048	6.11	0.16	2.5	97.5	0.0	1.44	1.49	0.80	0.88	3.19	97400	12270	5	0	0	0	0	logfile
✔	6LXV	30007	2021-11-01	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.54	0.0	0.04	16.35	0.00	2.202	4.67	0.68	2.6	97.4	0.0	1.03	0.93	0.79	0.91	6.23	54924	6448	24	0	16	2967	0	logfile
✔	7D68	30590	2021-11-01	2020-09-29	3.0	3.24	—	3.3	0.004	0.66	0.0	0.05	13.07	0.00	2.121	7.98	0.76	4.8	95.1	0.1	-2.09	0.62	0.77	3.53	3.2	0.002	0.55	0.0	0.04	15.97	0.00	2.168	7.10	2.27	3.7	96.3	0.0	0.52	0.55	0.63	0.78	2.46	8564	1070	8	0	0	7	0	logfile
✔	7KAU	22784	2021-11-02	2020-10-01	4.0	4.56	4.11	4.3	0.003	0.56	0.0	0.04	12.12	0.00	2.251	6.32	0.00	3.2	96.8	0.0	-0.93	0.64	0.84	—	4.3	0.002	0.61	0.0	0.04	14.25	0.00	2.202	7.72	0.18	3.0	97.0	0.0	2.25	0.56	0.64	0.84	—	10711	1340	7	0	56	0	0	logfile
✔	6W21	21521	2021-11-06	2020-03-04	3.3	4.10	—	3.5	0.006	0.72	0.0	0.04	13.64	0.00	1.978	16.34	0.91	2.5	97.4	0.1	-1.12	0.88	0.81	1.93	3.5	0.002	0.58	0.0	0.04	14.91	0.00	2.195	10.42	0.06	2.9	97.1	0.0	0.99	1.55	0.89	0.87	2.04	48327	6123	27	0	36	0	0	logfile
✔	6UT7	20868	2021-11-05	2019-10-29	4.26	4.38	4.21	4.3	0.005	0.84	0.0	0.06	14.74	0.01	2.117	5.40	0.44	5.8	94.2	0.0	-5.22	0.74	0.68	—	4.3	0.002	0.66	0.0	0.04	13.90	0.00	1.999	11.91	0.07	4.8	95.2	0.0	-0.38	1.61	0.81	0.80	—	45062	5522	26	4	20	0	0	logfile
✔	6X15	21989	2021-11-02	2020-05-18	3.05	3.20	—	3.2	0.006	0.96	0.0	0.05	20.24	0.01	2.281	3.63	0.00	3.1	96.9	0.0	-3.80	0.73	0.87	2.90	3.2	0.002	0.52	0.0	0.04	15.72	0.00	2.178	6.22	0.00	2.9	97.1	0.0	1.75	0.46	0.73	0.88	2.49	10026	1260	9	0	51	9	0	logfile
✔	6UT4	20865	2021-11-03	2019-10-29	3.1	3.25	3.14	3.2	0.004	0.75	1.0	0.05	14.35	0.01	2.109	5.87	0.15	3.8	96.2	0.0	-3.72	0.77	0.84	2.49	3.2	0.002	0.53	0.0	0.04	15.66	0.00	2.005	9.88	0.56	4.0	96.0	0.0	-0.08	1.34	0.79	0.86	2.26	19126	2315	17	0	12	12	0	logfile
✔	6W24	21524	2021-11-04	2020-03-04	3.4	3.93	—	3.6	0.006	0.83	0.0	0.04	13.88	0.00	1.977	18.30	0.62	3.2	96.5	0.3	-1.89	0.74	0.74	1.87	3.6	0.002	0.62	0.0	0.04	14.68	0.00	2.131	10.61	0.14	3.1	96.9	0.0	0.80	1.51	0.77	0.87	2.26	27327	3435	13	0	36	0	0	logfile
✔	7LFW	23307	2021-11-02	2021-01-18	2.9	2.79	—	2.9	0.010	0.65	0.0	0.05	13.33	0.00	2.226	9.92	0.25	2.3	97.7	0.0	-1.18	0.67	0.85	3.62	2.9	0.002	0.53	0.0	0.04	15.60	0.00	2.228	12.37	0.25	2.8	97.2	0.0	1.17	1.33	0.70	0.85	3.46	14846	1800	8	0	6	0	0	logfile
✔	7MiJ	23853	2021-11-03	2021-04-17	1.98	1.95	—	2.0	0.005	1.58	4.0	0.05	21.88	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.002	0.58	0.0	0.04	18.65	0.00	2.126	5.87	0.92	3.0	97.0	0.0	1.16	1.11	0.76	0.81	4.74	23010	2556	12	0	38	328	0	logfile
✔	7MiN	23857	2021-11-03	2021-04-17	3.09	3.25	—	3.2	0.008	1.64	0.0	0.05	20.91	0.01	2.303	4.34	0.18	4.6	95.3	0.2	-6.07	0.75	0.89	4.45	3.2	0.002	0.57	0.0	0.04	16.45	0.00	2.195	6.09	0.00	3.5	96.5	0.0	0.72	0.69	0.75	0.90	3.13	22728	2560	8	0	40	0	0	logfile

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