Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MRD	9196	2022-12-19	2018-10-12	3.82	4.44	—	3.9	0.008	0.88	0.0	0.07	10.50	0.00	1.941	43.72	0.00	9.7	90.1	0.2	-2.91	0.90	0.86	1.24	3.9	0.002	0.61	1.0	0.07	11.41	0.00	1.743	56.92	0.03	8.2	91.8	0.0	0.64	0.53	0.90	0.86	1.03	34517	4396	21	0	14	0	1477	logfile
✔	6RDA	4811	2022-12-14	2019-04-12	3.04	3.20	2.92	3.1	0.013	1.04	0.0	0.06	13.77	0.01	2.075	3.99	0.58	5.1	94.7	0.3	-5.84	0.57	0.86	3.66	3.1	0.002	0.60	0.0	0.04	15.30	0.00	2.098	7.71	0.10	3.7	96.3	0.0	1.41	1.58	0.56	0.86	2.77	19856	2597	18	0	1	30	0	logfile
✔	6RE5	4842	2022-12-11	2019-04-12	3.2	3.28	—	3.3	0.010	0.94	0.0	0.06	14.48	0.01	2.163	5.78	0.27	4.8	95.0	0.2	-3.94	0.72	0.85	2.85	3.3	0.002	0.57	0.0	0.04	15.80	0.00	1.956	9.37	0.27	3.3	96.6	0.1	0.37	0.47	0.71	0.86	2.15	53720	7099	37	0	11	0	0	logfile
✔	6UX4	20929	2022-12-13	2019-11-06	3.5	3.60	—	3.6	0.011	0.83	0.0	0.06	13.47	0.01	2.254	3.45	0.29	3.9	96.1	0.0	-4.46	0.67	0.83	2.86	3.6	0.002	0.49	0.0	0.05	14.93	0.00	2.109	6.48	0.29	2.5	97.5	0.0	0.32	1.18	0.66	0.82	2.20	13257	1776	19	0	24	3	0	logfile
✔	6UZA	20954	2022-12-15	2019-11-14	3.08	3.47	—	3.4	0.008	1.05	0.0	0.06	15.69	0.01	2.338	2.59	0.00	4.1	95.9	0.0	-3.92	0.70	0.87	3.55	3.4	0.002	0.49	0.0	0.04	16.00	0.00	2.268	4.82	0.18	3.4	96.6	0.0	0.74	0.41	0.67	0.88	3.02	23284	2936	8	0	20	0	0	logfile
✔	6TPS	10544	2022-12-12	2019-12-14	3.54	3.65	—	3.6	0.009	0.98	1.0	0.06	17.14	0.01	2.081	6.02	0.59	8.7	91.1	0.2	-5.18	0.75	0.82	2.15	3.6	0.002	0.63	0.0	0.04	18.01	0.00	2.036	9.00	0.15	5.3	94.6	0.1	-1.31	0.56	0.75	0.81	1.62	50070	6031	28	78	8	0	0	logfile
✔	6WJ3	21687	2022-12-12	2020-04-11	3.9	4.46	4.05	4.2	0.009	0.50	0.0	0.04	12.83	0.00	2.210	8.27	0.00	4.7	95.2	0.1	-2.80	0.85	0.76	0.95	4.2	0.002	0.66	0.0	0.04	14.95	0.00	2.194	10.27	0.54	4.7	95.3	0.0	-0.30	1.73	0.86	0.77	0.77	8912	1168	10	1	1	0	0	logfile
✔	7BZ2	30249	2022-12-11	2020-04-26	3.82	3.99	—	3.9	0.004	0.68	0.0	0.05	14.75	0.00	2.101	12.42	0.00	10.2	89.8	0.0	-6.04	0.73	0.79	2.10	3.9	0.002	0.64	0.0	0.04	16.48	0.00	2.125	8.60	0.68	4.1	95.9	0.0	-2.49	1.58	0.72	0.78	1.16	7393	978	5	0	1	0	0	logfile
✔	6LGP	0882	2022-12-14	2019-12-05	3.3	3.43	3.24	3.4	0.008	0.85	0.0	0.05	16.78	0.01	2.065	8.51	0.00	11.7	88.2	0.2	-4.33	0.67	0.82	2.77	3.4	0.002	0.59	0.0	0.04	16.87	0.00	2.193	8.35	0.27	7.6	92.4	0.0	-0.43	0.62	0.70	0.84	1.51	21212	2488	8	0	28	0	0	logfile
✔	6VRC	21367	2022-12-12	2020-02-07	3.2	3.32	—	3.3	0.010	1.27	2.0	0.08	15.90	0.01	2.170	11.64	3.70	7.7	92.3	0.0	-4.83	0.79	0.82	2.87	3.3	0.002	0.63	0.0	0.04	16.94	0.00	2.168	5.87	0.42	5.4	94.6	0.0	-0.42	0.89	0.80	0.86	2.18	9429	1007	2	51	0	0	0	logfile
✔	6WHC	21671	2022-12-12	2020-04-07	3.4	3.86	3.36	3.7	0.004	0.79	0.0	0.05	14.51	0.01	2.238	6.62	0.00	4.0	96.0	0.0	-4.67	0.83	0.82	1.97	3.7	0.002	0.64	0.0	0.04	15.76	0.00	2.153	10.65	0.11	2.8	97.2	0.0	-0.40	1.02	0.82	0.83	1.69	8709	1126	6	0	0	0	0	logfile
✔	6U5P	20652	2022-12-13	2019-08-28	3.3	3.44	—	3.4	0.006	0.75	0.0	0.05	14.37	0.00	2.236	3.96	0.43	4.4	95.6	0.0	-3.37	0.70	0.83	2.56	3.4	0.002	0.49	0.0	0.05	16.15	0.00	2.100	5.40	0.50	2.8	97.2	0.0	0.25	0.46	0.65	0.83	2.09	13308	1776	24	0	24	8	0	logfile
✔	6U68	20662	2022-12-12	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.002	0.74	0.0	0.05	4.16	0.00	2.318	2.42	0.00	3.8	96.2	0.0	-0.64	1.80	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	6VX5	21430	2022-12-13	2020-02-21	3.03	3.58	—	3.5	0.006	0.80	0.0	0.05	14.27	0.00	2.348	4.97	0.00	3.3	96.7	0.0	-6.15	0.72	0.84	2.92	3.5	0.002	0.64	0.0	0.04	16.39	0.00	2.266	8.72	0.57	1.9	98.1	0.0	-0.40	1.27	0.67	0.80	2.31	13056	1575	6	0	1	0	0	logfile
✔	6VX6	21431	2022-12-13	2020-02-21	3.0	3.24	—	3.2	0.005	0.82	0.0	0.05	14.09	0.00	2.260	4.77	0.94	1.9	98.1	0.0	-5.69	0.76	0.87	3.72	3.2	0.002	0.60	0.0	0.04	16.39	0.00	2.076	8.51	1.38	1.6	98.4	0.0	0.89	0.98	0.77	0.89	3.22	15061	1830	10	0	6	0	0	logfile
✔	7A95	11685	2022-12-16	2020-09-01	4.3	4.83	4.39	4.3	0.003	0.47	2.0	0.04	5.77	0.00	2.226	3.56	0.90	11.0	89.0	0.0	-4.57	0.87	0.78	—	4.4	0.002	0.60	0.0	0.04	9.01	0.00	2.143	7.98	0.00	3.6	96.4	0.1	-0.75	1.74	0.89	0.84	—	29887	3794	4	0	0	0	0	logfile
✔	6VYB	21457	2022-12-14	2020-02-25	3.2	3.72	—	3.6	0.014	1.36	1.0	0.09	10.35	0.01	2.299	0.69	0.13	2.4	97.5	0.1	0.50	0.77	0.78	2.94	3.6	0.002	0.56	0.0	0.04	13.34	0.00	2.077	5.66	0.13	2.9	97.1	0.0	0.50	0.64	0.76	0.79	2.72	22365	2875	18	0	59	0	0	logfile
✔	6X3S	22031	2022-12-13	2020-05-21	3.12	3.37	3.20	3.3	0.006	0.63	0.0	0.05	13.68	0.01	2.119	9.61	0.05	4.3	95.7	0.0	-2.03	0.76	0.85	3.77	3.3	0.002	0.56	0.0	0.04	15.54	0.00	2.167	8.43	0.42	3.3	96.7	0.0	0.18	0.52	0.74	0.88	3.32	17407	2121	17	0	23	0	0	logfile
✔	6XEY	22156	2022-12-16	2020-06-14	3.25	3.61	3.09	2.1	0.005	0.81	1.0	0.05	12.58	0.01	2.265	3.65	0.26	5.1	94.8	0.1	-1.87	0.88	0.83	3.34	2.1	0.002	0.57	0.0	0.04	13.58	0.00	2.114	6.76	0.11	4.3	95.6	0.1	-0.44	0.31	0.89	0.85	2.42	28482	3788	24	0	63	0	0	logfile
✔	6X0V	21985	2022-12-11	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile

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