Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QKX	14056	2022-07-03	2021-12-19	3.16	3.10	2.99	3.2	0.011	1.82	0.0	0.09	10.51	0.01	2.523	0.88	0.00	3.3	96.7	0.0	-1.48	0.39	0.79	6.00	3.2	0.002	0.55	0.0	0.05	13.05	0.00	2.076	3.81	0.00	1.4	98.6	0.0	-1.56	1.17	0.41	0.85	5.25	6822	438	6	0	0	0	3480	logfile
✔	7QB9	13882	2022-07-03	2021-11-18	3.1	3.36	3.16	3.4	0.008	1.01	0.0	0.06	13.13	0.01	2.291	3.10	0.00	3.5	96.5	0.0	-2.92	0.56	0.81	2.83	3.4	0.002	0.51	0.0	0.04	14.11	0.00	2.232	3.27	0.19	1.5	98.5	0.0	2.00	0.36	0.57	0.83	2.48	5419	598	4	0	26	0	0	logfile
✔	7MR2	23954	2022-07-04	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.86	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.002	0.57	0.0	0.04	14.89	0.00	2.164	9.94	0.00	4.6	95.4	0.0	0.12	0.29	0.90	0.84	—	16671	2075	3	0	0	0	0	logfile
✔	7VCT	31895	2022-07-07	2021-09-04	3.21	3.41	—	3.4	0.007	0.94	0.0	0.05	9.64	0.01	2.132	3.51	0.00	4.4	95.6	0.0	-3.08	0.77	0.82	2.62	3.3	0.002	0.57	0.0	0.04	13.13	0.00	2.026	7.02	0.03	2.6	97.4	0.0	0.73	1.30	0.77	0.84	1.95	35694	4506	12	0	18	0	0	logfile
✔	7MiM	23856	2022-07-05	2021-04-17	3.42	3.40	—	3.4	0.010	1.37	0.0	0.05	18.85	0.01	2.327	3.40	0.00	5.3	94.6	0.2	-5.95	0.61	0.79	3.00	3.4	0.002	0.57	0.0	0.04	16.39	0.00	2.180	5.34	0.31	3.2	96.8	0.0	0.28	1.24	0.66	0.85	2.02	22728	2560	8	0	40	0	0	logfile
✔	7S4V	24835	2022-07-03	2021-09-09	3.28	3.87	—	3.7	0.003	0.54	0.0	0.04	17.44	0.00	2.202	4.97	0.00	5.0	95.0	0.0	-1.46	0.80	0.80	2.24	3.7	0.002	0.52	0.0	0.03	18.46	0.00	2.235	5.36	0.00	4.4	95.6	0.0	-0.38	0.56	0.85	0.85	2.01	12215	1122	4	145	0	0	0	logfile
✔	7MiN	23857	2022-07-05	2021-04-17	3.09	3.25	—	3.2	0.011	1.46	0.0	0.05	19.81	0.01	2.303	4.36	0.18	4.6	95.3	0.2	-6.07	0.75	0.89	4.45	3.2	0.002	0.57	0.0	0.04	17.15	0.00	2.117	5.17	0.00	3.8	96.2	0.0	0.44	0.64	0.74	0.90	3.25	22728	2560	8	0	40	0	0	logfile
✔	7EKL	31169	2022-07-03	2021-04-05	3.5	3.66	—	3.6	0.005	1.13	0.0	0.05	10.53	0.01	2.141	5.35	0.81	2.9	96.9	0.2	-5.70	0.72	0.83	3.54	3.6	0.002	0.61	0.0	0.04	14.36	0.00	2.041	6.31	0.10	2.7	97.3	0.0	-0.34	1.51	0.74	0.85	2.10	9394	1180	4	0	4	0	0	logfile
✔	7PP6	13580	2022-07-04	2021-09-13	3.4	4.07	—	3.6	0.003	0.63	0.0	0.04	10.78	0.00	1.846	6.03	0.19	9.2	90.8	0.0	-2.04	0.77	0.76	1.96	3.6	0.002	0.56	0.0	0.04	11.81	0.00	1.971	7.41	0.24	9.0	91.0	0.0	-1.53	0.39	0.77	0.77	1.88	66562	4592	22	0	28	92	31702	logfile
✔	7T11	25587	2022-07-03	2021-11-30	2.7	2.94	—	3.0	0.004	0.61	2.0	0.04	10.76	0.00	2.107	3.59	0.27	2.4	97.6	0.0	0.96	0.60	0.74	3.90	3.0	0.002	0.49	2.0	0.04	13.65	0.00	2.230	3.78	0.53	2.0	98.0	0.0	1.51	0.42	0.62	0.78	3.02	8151	1132	6	0	2	0	0	logfile
✔	7NiH	12359	2022-07-06	2021-02-12	2.6	2.69	—	2.6	0.008	0.73	0.0	0.05	12.99	0.00	1.999	7.61	0.00	3.9	96.1	0.0	-3.00	0.75	0.86	4.27	2.7	0.002	0.56	0.0	0.04	15.41	0.00	2.027	7.84	1.60	3.7	96.3	0.0	0.94	0.97	0.76	0.88	3.15	32464	4176	16	0	16	0	0	logfile
✔	7Q2Z	13786	2022-07-03	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.78	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.002	0.53	0.0	0.03	19.97	0.00	2.116	3.52	0.00	2.1	97.7	0.1	2.12	1.23	0.71	0.85	1.71	8258	902	4	46	0	0	0	logfile
✔	7TYi	26180	2022-07-03	2022-02-13	3.3	3.44	3.19	3.5	0.004	0.56	0.0	0.04	12.86	0.00	2.217	6.71	1.50	1.6	98.4	0.0	-2.88	0.66	0.77	2.71	3.5	0.002	0.52	0.0	0.04	14.94	0.00	2.116	8.04	0.30	2.2	97.8	0.0	0.45	0.52	0.65	0.82	2.32	9413	1154	6	0	13	0	0	logfile
✔	7TF2	25859	2022-07-08	2022-01-06	3.62	4.27	—	3.8	0.003	0.70	0.0	0.05	13.02	0.01	2.277	3.38	0.35	2.1	97.9	0.0	-0.12	0.86	0.82	1.53	3.8	0.002	0.59	0.0	0.04	14.25	0.00	2.121	9.47	0.07	2.3	97.7	0.0	0.53	0.65	0.86	0.84	1.48	50292	6228	48	0	120	0	0	logfile
✔	7o6B	12737	2022-07-04	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.002	0.55	0.0	0.04	14.05	0.00	2.012	9.95	0.38	4.0	96.0	0.0	0.60	1.16	0.76	0.70	0.37	14200	879	1	0	0	0	7040	logfile
✔	7WQ3	32698	2022-07-03	2022-01-24	2.7	2.90	—	3.2	0.011	0.72	0.0	0.06	8.04	0.00	2.189	5.27	0.40	1.0	99.0	0.0	-1.34	0.39	0.47	0.48	3.0	0.002	0.56	0.0	0.04	15.81	0.00	2.217	6.95	2.53	1.7	98.3	0.0	1.08	1.88	0.63	0.81	2.83	9209	1160	7	0	5	0	0	logfile
✔	7TJS	25930	2022-07-05	2022-01-17	3.2	3.47	3.27	3.4	0.003	0.60	0.0	0.05	12.62	0.00	1.901	1.83	0.00	1.5	98.5	0.0	0.55	0.78	0.85	3.14	3.4	0.002	0.55	0.0	0.04	14.97	0.00	2.019	5.78	0.08	1.7	98.3	0.0	1.28	0.55	0.74	0.86	2.31	23539	3102	12	0	8	0	0	logfile
✔	7W0E	32240	2022-07-04	2021-11-18	4.03	3.95	—	3.8	0.003	0.59	0.0	0.04	13.97	0.00	2.094	14.02	0.00	4.8	95.1	0.1	-0.82	0.86	0.75	—	3.8	0.002	0.58	0.0	0.04	14.00	0.00	2.062	12.63	0.07	4.5	95.5	0.1	-0.59	0.38	0.86	0.75	—	14850	1557	5	105	4	0	0	logfile
✔	3JB6	6408	2022-07-04	2015-08-02	3.3	3.35	—	3.4	0.010	0.90	4.0	0.06	9.55	0.01	2.123	8.54	0.20	2.4	97.4	0.1	-3.72	0.63	0.90	5.02	3.4	0.002	0.58	0.0	0.04	15.06	0.00	2.157	5.94	0.20	1.8	98.2	0.0	0.16	1.19	0.63	0.88	3.71	13904	1731	6	0	2	0	0	logfile
✔	6TYi	20583	2022-07-03	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	15.89	0.00	1.796	11.37	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.002	0.52	0.0	0.03	17.16	0.00	2.221	6.27	0.11	2.8	97.2	0.0	3.28	1.18	0.71	0.82	1.28	9184	1186	11	0	4	0	0	logfile

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