Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RPH	24614	2023-07-04	2021-08-03	2.5	2.68	2.59	2.7	0.017	1.89	4.0	0.12	14.72	0.01	1.952	2.03	0.61	2.1	97.9	0.0	-0.70	0.53	0.76	4.93	2.7	0.002	0.63	0.0	0.04	16.11	0.00	2.195	6.19	2.21	1.6	98.4	0.0	2.13	1.30	0.66	0.85	3.03	8573	926	1	0	36	86	0	logfile
✔	6TAY	10430	2023-07-16	2019-10-31	3.2	2.55	—	2.9	0.011	1.15	0.0	0.06	11.27	0.01	2.066	4.61	0.28	8.9	91.0	0.1	-3.72	0.86	0.82	3.85	2.9	0.002	0.61	0.0	0.04	13.97	0.00	2.036	8.69	0.18	7.2	92.8	0.0	0.47	1.18	0.87	0.84	2.41	35241	4350	1	0	71	0	0	logfile
✔	7CN1	30413	2023-07-04	2020-07-29	3.7	3.74	—	3.7	0.008	0.78	0.0	0.05	13.72	0.00	2.147	16.07	0.32	10.2	89.8	0.0	-3.65	0.47	0.79	1.71	3.7	0.002	0.60	0.0	0.04	15.22	0.00	2.206	8.47	0.32	5.1	94.9	0.0	0.32	0.61	0.48	0.75	1.56	6290	822	6	0	3	0	0	logfile
✔	6XiW	22203	2023-07-06	2020-06-22	2.8	3.04	—	3.0	0.005	0.86	0.0	0.04	15.93	0.00	2.257	2.98	0.79	3.8	96.2	0.0	-1.79	0.55	0.85	3.36	3.0	0.002	0.54	0.0	0.04	17.30	0.00	2.240	5.88	1.82	2.2	97.8	0.0	2.00	2.52	0.53	0.87	2.47	11819	1400	4	0	12	5	0	logfile
✔	8i1T	35121	2023-07-11	2023-01-13	2.8	2.69	2.76	2.7	0.007	0.70	0.0	0.05	14.07	0.00	2.196	7.64	0.08	3.2	96.6	0.2	-1.01	0.58	0.87	4.08	2.7	0.002	0.55	0.0	0.04	15.55	0.00	2.181	7.49	1.30	2.5	97.3	0.2	-0.65	0.28	0.58	0.88	3.21	22939	3003	7	0	0	0	0	logfile
✔	7QTL	14144	2023-07-09	2022-01-14	2.48	2.85	2.48	2.5	0.007	0.66	0.0	0.04	17.25	0.01	1.988	8.61	3.98	2.4	97.6	0.0	-1.53	0.89	0.86	4.27	2.5	0.002	0.55	0.0	0.04	17.21	0.00	1.460	7.67	2.04	1.9	98.1	0.0	0.95	4.18	0.91	0.90	3.84	18397	2152	14	44	4	120	0	logfile
✔	7RR7	24654	2023-07-11	2021-08-09	3.05	3.60	3.05	3.5	0.005	0.77	2.0	0.05	14.15	0.00	2.201	8.22	0.28	3.1	96.9	0.0	0.40	0.76	0.85	2.89	3.5	0.002	0.53	0.0	0.04	14.05	0.00	2.122	8.20	0.28	2.3	97.7	0.0	0.93	0.33	0.77	0.88	2.40	23734	3061	6	0	27	0	0	logfile
✔	7SCA	25031	2023-07-04	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	7WGC	32483	2023-07-04	2021-12-28	3.6	3.85	—	3.8	0.003	0.63	0.0	0.04	14.80	0.00	2.191	10.26	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.002	0.61	0.0	0.04	16.25	0.00	2.170	10.73	0.43	4.2	95.8	0.0	0.33	0.37	0.56	0.54	0.98	6527	795	4	0	5	0	0	logfile
✔	7X6A	33019	2023-07-14	2022-03-07	3.5	3.86	—	3.8	0.002	0.52	0.0	0.04	14.04	0.00	1.981	7.25	0.06	6.2	93.5	0.4	-1.29	0.76	0.78	1.61	3.8	0.002	0.59	0.0	0.04	15.95	0.00	2.124	6.71	0.21	6.0	93.6	0.4	-0.96	1.67	0.76	0.80	1.92	30879	3969	9	0	0	0	0	logfile
✔	6T0S	10358	2023-07-07	2019-10-03	3.04	3.11	3.10	3.1	0.003	0.60	0.0	0.04	13.17	0.01	2.109	4.37	4.69	2.8	97.2	0.0	-3.21	0.68	0.86	3.59	3.1	0.002	0.52	0.0	0.04	15.00	0.00	1.972	9.02	0.20	1.9	98.1	0.0	0.58	0.54	0.69	0.88	3.15	14651	1700	6	43	2	0	0	logfile
✔	8DTi	27699	2023-07-05	2022-07-25	3.8	3.87	—	3.8	0.006	0.66	0.0	0.04	13.31	0.00	2.196	4.70	0.00	2.9	97.1	0.0	1.82	0.81	0.76	2.21	3.8	0.002	0.55	0.0	0.04	15.22	0.00	2.204	8.20	0.43	2.3	97.7	0.0	1.89	0.40	0.82	0.79	2.07	9455	1258	4	0	2	0	0	logfile
✔	7RDY	24427	2023-07-10	2021-07-12	3.1	3.78	—	3.6	0.015	1.04	0.0	0.14	16.08	0.01	1.894	8.06	10.18	7.6	92.4	0.0	-2.87	0.81	0.82	3.04	3.6	0.002	0.58	0.0	0.04	14.97	0.00	1.967	9.29	0.14	4.7	95.3	0.0	-0.34	1.18	0.77	0.79	2.63	21846	2553	11	78	19	0	0	logfile
✔	7TYV	26195	2023-07-08	2022-02-14	2.8	2.28	2.98	2.1	0.005	0.71	0.0	0.05	13.45	0.00	2.081	7.27	0.00	5.0	95.0	0.0	-0.19	0.75	0.72	2.31	2.0	0.002	0.61	0.0	0.04	16.09	0.00	2.103	6.71	2.29	4.1	95.9	0.0	-0.13	0.33	0.77	0.76	2.18	17306	2114	30	0	58	0	0	logfile
✔	7NTC	12587	2023-07-14	2021-03-09	3.6	4.35	3.76	4.1	0.005	0.65	0.0	0.05	14.27	0.00	2.165	7.60	0.00	6.7	93.2	0.1	-0.97	0.84	0.83	1.67	4.1	0.002	0.54	0.0	0.04	15.67	0.00	2.145	6.45	0.16	5.3	94.6	0.1	-0.62	0.34	0.83	0.82	1.44	30005	3698	33	0	81	0	0	logfile
✔	8ATU	15663	2023-07-18	2022-08-24	3.3	2.76	3.44	3.2	0.003	0.76	0.0	0.04	16.63	0.01	2.263	7.30	0.36	3.5	96.5	0.0	-1.00	0.54	0.70	0.73	3.2	0.002	0.61	0.0	0.04	16.78	0.00	2.182	11.22	0.24	2.5	97.5	0.0	1.30	0.50	0.55	0.72	0.84	43882	5674	4	0	2	0	0	logfile
✔	6X0V	21985	2023-07-03	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✔	7L7i	23213	2023-07-07	2020-12-28	3.3	3.85	—	3.7	0.013	1.76	3.0	0.09	14.06	0.01	2.300	1.52	0.76	3.7	96.1	0.2	-1.40	0.78	0.68	3.47	3.7	0.002	0.56	0.0	0.04	15.26	0.00	2.190	7.83	0.06	3.1	96.9	0.0	0.70	1.57	0.84	0.84	2.46	14425	1775	6	0	2	0	0	logfile
✔	7PW4	13674	2023-07-09	2021-10-06	3.27	3.69	—	3.5	0.003	0.62	0.0	0.15	13.04	0.00	2.030	4.58	0.00	2.8	97.2	0.0	1.69	0.79	0.82	2.05	3.5	0.002	0.44	0.0	0.03	14.23	0.00	1.933	3.81	0.06	2.5	97.5	0.0	1.97	0.89	0.81	0.85	1.77	18965	2435	5	0	199	0	0	logfile
✔	7oJH	12951	2023-07-05	2021-05-15	3.1	3.40	3.12	3.3	0.011	0.90	0.0	0.05	11.01	0.00	2.240	2.92	0.52	2.9	97.1	0.0	0.37	0.70	0.83	3.56	3.3	0.002	0.53	0.0	0.04	14.62	0.00	2.245	4.58	0.10	2.9	97.1	0.0	1.25	0.99	0.71	0.87	2.71	8999	1138	4	0	5	0	0	logfile

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