Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i1T	35121	2023-04-26	2023-01-13	2.8	2.69	2.76	2.7	0.007	0.70	0.0	0.05	14.07	0.00	2.196	7.64	0.08	3.2	96.6	0.2	-1.01	0.58	0.87	4.08	2.7	0.002	0.55	0.0	0.04	15.55	0.00	2.181	7.49	1.30	2.5	97.3	0.2	-0.65	0.28	0.58	0.88	3.21	22939	3003	7	0	0	0	0	logfile
✔	7QTL	14144	2023-04-24	2022-01-14	2.48	2.85	2.48	2.5	0.007	0.66	0.0	0.04	17.25	0.01	1.988	8.61	3.98	2.4	97.6	0.0	-1.53	0.89	0.86	4.27	2.5	0.002	0.55	0.0	0.04	17.21	0.00	1.460	7.67	2.04	1.9	98.1	0.0	0.95	4.18	0.91	0.90	3.84	18397	2152	14	44	4	120	0	logfile
✔	7SK5	25173	2023-04-23	2021-10-19	4.0	4.30	—	4.2	0.004	0.63	0.0	0.06	13.93	0.00	1.998	6.42	0.00	4.7	95.3	0.0	0.50	0.69	0.81	—	4.2	0.002	0.54	0.0	0.04	15.66	0.00	1.979	10.91	0.63	4.9	95.1	0.0	-0.06	0.47	0.69	0.80	—	14160	897	7	0	7	0	6928	logfile
✔	7SCA	25031	2023-04-20	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	7WGC	32483	2023-04-20	2021-12-28	3.6	3.85	—	3.8	0.003	0.63	0.0	0.04	14.80	0.00	2.191	10.26	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.002	0.61	0.0	0.04	16.25	0.00	2.170	10.73	0.43	4.2	95.8	0.0	0.33	0.37	0.56	0.54	0.98	6527	795	4	0	5	0	0	logfile
✔	7X6A	33019	2023-04-29	2022-03-07	3.5	3.86	—	3.8	0.002	0.52	0.0	0.04	14.04	0.00	1.981	7.25	0.06	6.2	93.5	0.4	-1.29	0.76	0.78	1.61	3.8	0.002	0.59	0.0	0.04	15.95	0.00	2.124	6.71	0.21	6.0	93.6	0.4	-0.96	1.67	0.76	0.80	1.92	30879	3969	9	0	0	0	0	logfile
✔	7WSG	32757	2023-04-22	2022-01-29	3.03	3.29	—	3.2	0.003	0.52	0.0	0.04	12.82	0.00	2.058	10.65	4.60	2.7	97.3	0.0	-1.05	0.70	0.70	2.71	3.2	0.002	0.59	0.0	0.04	15.41	0.00	2.079	12.73	0.29	3.4	96.6	0.0	-0.22	0.94	0.71	0.73	2.03	6413	787	3	0	1	0	0	logfile
✔	8AQV	15591	2023-04-20	2022-08-13	2.96	3.40	3.09	3.4	0.003	0.71	0.0	0.04	13.07	0.00	2.164	4.53	0.00	4.8	94.5	0.6	-1.32	0.64	0.80	2.89	3.4	0.002	0.62	0.0	0.04	16.31	0.00	2.193	5.80	1.60	4.7	94.8	0.5	0.25	0.55	0.62	0.80	1.99	6447	789	4	0	3	0	0	logfile
✔	7TEi	25846	2023-04-27	2022-01-05	3.4	3.66	3.40	3.5	0.006	0.79	0.0	0.06	13.29	0.01	2.268	2.65	0.00	3.5	96.5	0.0	-0.99	0.84	0.84	2.83	3.5	0.002	0.52	0.0	0.04	14.07	0.00	2.176	5.00	0.07	2.8	97.2	0.0	0.56	1.11	0.86	0.87	2.60	25420	3044	39	0	116	0	0	logfile
✔	8GS2	34218	2023-04-24	2022-09-04	2.84	3.09	2.94	3.1	0.002	0.42	0.0	0.04	10.20	0.00	1.579	4.49	0.30	1.2	98.8	0.0	1.18	0.74	0.89	4.67	3.1	0.002	0.48	0.0	0.04	15.09	0.00	2.185	6.70	1.56	1.7	98.3	0.0	1.43	1.32	0.74	0.90	4.14	16935	1916	7	64	4	0	0	logfile
✔	8DK1	27480	2023-04-25	2022-07-01	2.95	3.68	3.03	3.4	0.002	0.42	0.0	0.04	9.97	0.00	2.294	2.83	1.44	3.3	96.7	0.0	2.11	0.85	0.90	2.51	3.4	0.002	0.51	0.0	0.04	12.85	0.00	2.260	3.98	1.49	3.6	96.4	0.0	2.59	0.62	0.85	0.90	2.22	19500	2446	8	0	0	0	0	logfile
✔	6ZVJ	11458	2023-04-22	2020-07-24	3.8	3.00	—	3.1	0.010	1.33	7.0	0.07	17.39	0.01	1.731	5.46	1.39	0.2	99.8	0.0	-4.19	0.59	0.64	1.31	2.9	0.002	0.65	0.0	0.04	17.29	0.00	1.911	12.28	0.29	4.7	95.3	0.0	-0.88	1.68	0.67	0.75	0.98	115020	10127	55	1720	9	0	0	logfile
✔	7LWQ	23554	2023-04-25	2021-03-01	3.44	3.73	—	3.6	0.013	1.77	3.0	0.10	13.84	0.01	2.519	0.05	1.18	6.6	93.1	0.4	-1.34	0.77	0.79	2.74	3.6	0.002	0.60	0.0	0.04	15.04	0.00	2.183	6.77	0.24	3.8	96.2	0.0	0.36	1.27	0.77	0.80	2.05	19273	2425	7	0	29	0	0	logfile
✔	8EEB	28050	2023-04-23	2022-09-06	3.9	4.36	3.88	4.0	0.003	0.66	0.0	0.05	13.80	0.00	2.221	9.09	0.00	3.4	96.6	0.0	0.48	0.73	0.80	1.42	4.0	0.002	0.66	0.0	0.04	15.39	0.00	2.178	10.51	0.13	3.5	96.5	0.0	0.78	0.95	0.73	0.80	1.39	14672	1873	7	0	16	0	0	logfile
✔	7KDJ	22824	2023-04-26	2020-10-08	3.49	4.11	—	3.8	0.013	1.69	1.0	0.10	12.36	0.01	1.477	0.25	0.49	6.4	93.2	0.4	-0.75	0.80	0.79	2.84	3.8	0.002	0.59	0.0	0.04	13.66	0.00	2.204	5.88	0.13	3.6	96.4	0.0	0.57	0.54	0.84	0.84	2.15	22365	2875	18	0	59	0	0	logfile
✔	7WiV	32537	2023-04-20	2022-01-05	2.88	3.16	—	3.0	0.008	1.02	4.0	0.06	13.63	0.01	2.209	8.44	0.68	9.4	90.2	0.4	-5.21	0.69	0.88	3.24	3.0	0.002	0.68	0.0	0.04	14.94	0.00	2.229	6.28	1.36	6.9	93.0	0.1	-0.34	1.90	0.67	0.87	2.23	8646	1147	3	0	1	0	0	logfile
✔	7PW4	13674	2023-04-24	2021-10-06	3.27	3.69	—	3.5	0.003	0.62	0.0	0.15	13.04	0.00	2.030	4.58	0.00	2.8	97.2	0.0	1.69	0.79	0.82	2.05	3.5	0.002	0.44	0.0	0.03	14.23	0.00	1.933	3.81	0.06	2.5	97.5	0.0	1.97	0.89	0.81	0.85	1.77	18965	2435	5	0	199	0	0	logfile
✔	7K0i	22598	2023-04-23	2020-09-04	3.3	3.75	—	3.7	0.005	0.64	0.0	0.05	12.84	0.00	2.222	6.32	0.25	4.0	96.0	0.0	0.10	0.72	0.81	2.93	3.7	0.002	0.49	0.0	0.04	14.17	0.00	2.038	6.09	0.37	2.2	97.8	0.0	0.83	0.30	0.76	0.83	2.45	15366	1954	10	0	6	0	0	logfile
✔	7SH2	25122	2023-04-25	2021-10-07	3.23	3.55	—	3.5	0.002	0.56	0.0	0.04	15.06	0.00	2.135	7.83	0.04	4.4	95.6	0.0	0.45	0.69	0.68	1.22	3.5	0.002	0.57	0.0	0.04	16.50	0.00	1.961	10.93	0.22	4.7	95.3	0.0	0.33	0.97	0.72	0.75	1.30	20933	2545	15	23	9	0	0	logfile
✔	7T8C	25744	2023-04-28	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	11.08	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile

• ← previous
• Page 6 of 372
• next →