Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5YU8	6844	2023-08-15	2017-11-21	3.8	3.92	—	3.9	0.014	1.86	0.0	0.09	12.63	0.02	1.834	0.30	0.25	2.5	97.3	0.2	-3.36	0.62	0.83	3.41	3.9	0.002	0.65	0.0	0.04	15.84	0.00	2.023	6.55	0.20	1.5	98.5	0.0	-0.54	1.32	0.61	0.85	2.16	18147	2292	13	0	10	0	0	logfile
✔	8io8	35611	2023-08-12	2023-03-10	2.17	2.85	2.44	2.5	0.006	0.67	0.0	0.05	10.89	0.00	2.008	5.86	0.08	3.4	96.6	0.0	0.23	0.70	0.91	5.90	2.5	0.002	0.47	0.0	0.04	13.54	0.00	2.024	5.01	0.68	2.9	96.9	0.1	1.12	0.40	0.70	0.91	4.71	12596	1576	4	0	6	0	0	logfile
✔	7BKP	12213	2023-08-12	2021-01-16	2.8	2.78	2.75	2.9	0.009	0.84	0.0	0.05	12.30	0.00	1.824	2.22	0.32	6.5	93.2	0.3	-2.15	0.66	0.84	3.66	2.9	0.002	0.51	0.0	0.04	14.72	0.00	2.089	2.88	1.13	5.1	94.9	0.0	1.46	2.05	0.64	0.86	2.83	12118	689	4	28	3	0	5956	logfile
✔	8SEV	40430	2023-08-16	2023-04-10	3.17	3.33	3.18	3.3	0.003	0.53	0.0	0.04	14.38	0.00	2.236	6.19	0.00	3.1	96.9	0.0	1.76	0.60	0.79	2.51	3.3	0.002	0.50	0.0	0.04	15.99	0.00	2.211	6.87	0.09	3.2	96.8	0.0	1.78	0.49	0.60	0.81	1.90	20632	2504	8	0	8	0	0	logfile
✔	8BQ2	16170	2023-08-17	2022-11-18	3.8	3.92	3.66	3.8	0.003	0.54	0.0	0.04	13.61	0.01	2.219	7.91	0.00	2.0	98.0	0.0	-0.37	0.77	0.86	2.55	3.8	0.002	0.48	0.0	0.04	14.63	0.00	2.215	6.08	0.04	1.4	98.6	0.0	-0.40	0.62	0.78	0.88	2.35	22331	2790	19	30	27	0	0	logfile
✔	6M5G	30085	2023-08-15	2020-03-10	3.6	3.74	—	3.6	0.010	0.82	0.0	0.05	13.87	0.00	1.951	11.79	9.29	9.4	90.4	0.2	-3.64	0.74	0.90	1.98	3.6	0.002	0.62	0.0	0.04	14.94	0.00	2.001	9.59	0.43	3.9	96.0	0.0	-0.87	1.46	0.73	0.89	1.61	17363	2204	13	0	10	0	0	logfile
✔	8P34	17383	2023-08-09	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.50	0.0	0.05	13.21	0.00	2.693	0.69	0.00	4.3	95.7	0.0	-1.63	0.36	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	8PHP	17670	2023-08-25	2023-06-20	2.56	2.99	2.40	2.8	0.001	0.32	0.0	0.04	12.91	0.00	2.357	1.69	0.00	1.5	98.5	0.0	1.55	0.77	0.89	3.59	2.8	0.002	0.51	0.0	0.04	15.75	0.00	2.185	6.11	1.09	1.9	98.1	0.0	2.08	1.36	0.75	0.90	2.84	40812	4968	24	0	0	0	0	logfile
✔	8EHR	28150	2023-08-10	2022-09-14	3.2	2.95	3.03	3.1	0.003	0.55	0.0	0.05	13.08	0.00	2.374	2.29	0.00	0.0	100.0	0.0	1.82	0.58	0.85	3.24	3.1	0.002	0.48	0.0	0.04	15.23	0.00	2.320	4.65	0.37	0.9	99.1	0.0	1.26	1.17	0.58	0.87	3.27	7350	1022	7	0	0	0	0	logfile
✔	7YPo	34010	2023-08-12	2022-08-04	3.5	3.79	3.56	3.8	0.004	0.59	0.0	0.04	15.76	0.00	2.091	11.72	0.00	4.7	95.3	0.0	-1.80	0.56	0.78	2.30	3.8	0.002	0.54	0.0	0.04	18.20	0.00	2.175	9.46	0.32	3.3	96.7	0.0	-0.73	0.57	0.55	0.77	2.14	11324	1308	5	28	0	0	0	logfile
✔	8BVQ	16268	2023-08-18	2022-12-05	3.3	3.33	3.29	3.5	0.004	0.55	0.0	0.04	16.05	0.00	2.088	7.55	0.31	4.1	95.9	0.0	-0.42	0.54	0.73	1.75	3.5	0.002	0.48	0.0	0.04	16.24	0.00	2.051	7.03	0.39	5.0	95.0	0.0	-0.40	0.28	0.60	0.81	1.87	23125	1518	6	0	0	0	11250	logfile
✔	7QV6	14168	2023-08-09	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.39	0.0	0.06	11.93	0.00	2.389	1.45	0.00	0.0	100.0	0.0	0.74	0.46	0.40	0.86	5.96	4842	306	18	0	0	0	2556	logfile
✔	8HHC	34760	2023-08-18	2022-11-16	3.3	3.40	3.29	3.3	0.005	0.65	0.0	0.05	13.08	0.00	1.776	5.46	0.04	2.9	97.1	0.0	0.83	0.82	0.88	3.74	3.3	0.002	0.49	0.0	0.04	14.60	0.00	1.953	5.54	0.19	2.3	97.7	0.0	1.28	0.28	0.82	0.89	2.64	24249	3129	12	0	11	0	0	logfile
✔	8ALY	15520	2023-08-19	2022-08-01	2.98	3.34	—	3.3	0.005	0.61	0.0	0.04	16.13	0.00	2.108	5.86	0.36	4.7	95.3	0.0	-1.52	0.75	0.86	3.87	3.3	0.002	0.46	0.0	0.04	17.31	0.00	1.928	5.43	1.74	3.3	96.7	0.0	-0.10	1.10	0.72	0.86	3.52	41300	5180	40	0	20	0	0	logfile
✔	7C99	30309	2023-08-10	2020-06-05	3.36	3.44	—	3.5	0.008	1.05	0.0	0.05	16.20	0.00	1.776	9.93	0.00	6.0	94.0	0.0	-5.91	0.50	0.85	3.07	3.5	0.002	0.57	0.0	0.04	18.74	0.00	2.212	6.12	0.26	5.9	94.1	0.0	-2.32	2.00	0.50	0.87	2.48	7656	927	8	18	6	0	0	logfile
✔	7C9A	30310	2023-08-10	2020-06-05	3.43	3.55	—	3.6	0.007	1.04	0.0	0.05	17.43	0.01	1.965	8.72	0.00	4.9	95.1	0.0	-4.96	0.48	0.87	3.13	3.6	0.002	0.56	0.0	0.04	18.57	0.00	2.290	5.19	0.13	4.2	95.8	0.0	-0.18	1.35	0.47	0.88	2.56	7590	933	7	18	6	0	0	logfile
✔	7QV5	14167	2023-08-09	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.35	0.0	0.06	12.33	0.00	2.576	1.08	0.00	1.0	99.0	0.0	-1.49	0.87	0.50	0.90	6.84	5562	342	27	0	18	0	2997	logfile
✔	8DMX	27548	2023-08-12	2022-07-08	3.37	3.66	3.43	3.6	0.003	0.59	0.0	0.04	13.99	0.00	2.105	6.01	0.00	2.3	97.7	0.0	0.17	0.55	0.79	2.06	3.6	0.002	0.54	0.0	0.04	15.82	0.00	2.014	3.56	0.16	2.2	97.8	0.0	-0.45	0.50	0.69	0.91	2.30	11748	1488	8	0	8	0	0	logfile
✔	7EoQ	31227	2023-08-18	2021-04-22	4.1	4.43	—	4.1	0.002	0.47	0.0	0.04	10.23	0.00	2.195	7.68	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.002	0.58	0.0	0.04	11.24	0.00	2.184	12.47	0.00	6.4	93.6	0.0	-0.51	1.21	0.88	0.78	—	24742	3144	8	0	10	0	0	logfile
✔	6ZGF	11204	2023-08-19	2020-06-18	3.1	3.27	3.13	3.2	0.007	0.86	0.0	0.07	12.80	0.02	2.112	5.22	0.76	6.5	93.5	0.0	-2.49	0.80	0.85	3.88	3.2	0.002	0.59	0.0	0.04	14.21	0.00	2.249	4.36	0.14	5.4	94.6	0.0	-1.31	0.37	0.81	0.87	3.41	26163	3180	36	0	93	0	0	logfile

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