Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YJ6	10817	2021-05-05	2020-04-02	3.1	3.39	3.09	3.3	0.008	0.85	0.0	0.05	9.60	0.00	2.082	2.42	0.07	5.1	94.7	0.1	-4.59	0.73	0.77	4.44	3.3	0.003	0.57	0.0	0.04	13.85	0.00	2.016	5.80	0.00	5.7	94.3	0.0	-0.48	0.75	0.74	0.79	3.19	26878	1635	3	0	22	0	13353	logfile
✔	6ZNM	11317	2021-05-04	2020-07-06	4.1	4.41	3.90	4.1	0.013	1.75	0.0	0.09	13.25	0.00	1.790	1.77	0.00	7.2	92.6	0.1	-2.56	0.77	0.75	—	4.1	0.004	0.71	0.0	0.04	12.97	0.00	2.053	12.18	0.00	4.7	95.2	0.1	-0.03	0.96	0.81	0.84	—	19253	2470	15	0	138	0	0	logfile
✔	6WCZ	21618	2021-05-03	2020-03-31	4.0	4.24	—	4.0	0.009	1.22	0.0	0.06	12.53	0.01	2.085	14.55	2.55	12.9	87.1	0.0	-4.79	0.82	0.77	—	4.0	0.003	0.76	0.0	0.04	15.24	0.01	2.015	15.82	0.47	7.0	93.0	0.0	-1.20	1.77	0.83	0.77	—	9894	1231	2	0	2	0	0	logfile
✔	6WB2	21585	2021-05-03	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.65	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.53	0.0	0.04	11.45	0.00	2.201	10.46	0.17	3.8	96.2	0.0	-0.04	0.66	0.87	0.82	—	8407	946	4	75	0	0	0	logfile
✔	6VZ1	21481	2021-05-03	2020-02-27	3.2	3.35	—	3.4	0.016	1.51	0.0	0.06	19.74	0.01	1.864	10.74	0.00	12.0	88.0	0.0	-4.38	0.59	0.86	3.07	3.4	0.003	0.67	0.0	0.04	17.39	0.00	2.179	8.30	0.14	5.3	94.7	0.0	-0.55	0.99	0.57	0.84	2.37	7112	822	4	0	6	0	0	logfile
✔	6WJ6	21690	2021-05-04	2020-04-12	2.58	2.50	—	2.7	0.024	2.71	0.0	0.08	18.30	0.02	2.082	12.63	0.00	2.1	97.8	0.1	-3.58	0.69	0.84	4.27	2.7	0.005	0.65	0.0	0.05	18.06	0.01	2.128	11.52	1.69	2.4	97.6	0.0	0.63	0.41	0.69	0.84	3.65	18884	1901	32	0	70	198	0	logfile
✔	6YW7	10960	2021-05-03	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	1.63	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.99	0.0	0.01	5.30	0.00	2.336	9.92	0.00	16.8	83.0	0.2	-3.04	6.98	0.80	0.74	—	5426	1788	9	0	2	0	0	logfile
✔	6WAZ	21582	2021-05-03	2020-03-26	4.1	4.33	—	4.2	0.004	0.80	0.0	0.06	14.85	0.01	1.931	9.92	0.27	8.5	91.5	0.0	-4.73	0.83	0.82	—	4.2	0.003	0.63	0.0	0.04	14.26	0.00	2.193	9.92	0.00	6.6	93.4	0.0	-0.98	1.32	0.83	0.84	—	8537	955	4	54	0	0	0	logfile
✔	6UW4	20917	2021-05-04	2019-11-04	3.1	3.24	—	3.2	0.010	0.97	0.0	0.06	17.92	0.01	2.280	3.97	0.00	5.8	94.2	0.0	-4.45	0.72	0.84	1.94	3.2	0.002	0.56	0.0	0.04	16.57	0.00	2.179	6.32	0.23	5.5	94.5	0.0	0.21	0.48	0.71	0.84	1.22	20281	2412	8	0	21	0	0	logfile
✔	6PSU	20464	2021-05-06	2019-07-13	3.9	3.15	—	3.1	0.014	0.96	0.0	0.07	17.86	0.00	1.805	46.76	0.24	12.5	87.5	0.1	-4.34	0.64	0.74	1.62	3.5	0.003	0.67	0.0	0.04	19.23	0.00	2.057	14.89	0.51	6.6	93.4	0.0	-1.11	1.51	0.64	0.73	0.96	32167	3877	14	79	8	0	0	logfile
✔	6M39	30071	2021-05-05	2020-03-03	3.55	3.63	—	3.6	0.009	1.24	0.0	0.07	11.89	0.01	2.271	7.44	1.23	9.7	90.3	0.0	-4.52	0.73	0.80	2.70	3.6	0.005	0.76	0.0	0.05	14.89	0.00	2.127	16.13	0.99	9.8	90.2	0.0	-2.13	0.85	0.74	0.82	2.10	22716	2811	6	0	54	0	0	logfile
✔	6PSW	20466	2021-05-06	2019-07-13	3.7	3.46	—	3.5	0.011	0.90	0.0	0.06	18.69	0.00	1.987	41.89	0.40	11.4	88.4	0.2	-4.03	0.69	0.78	1.68	3.5	0.003	0.68	0.0	0.04	19.67	0.00	2.111	14.04	0.12	6.5	93.4	0.1	-1.14	1.51	0.69	0.78	1.03	32695	3831	13	124	6	0	0	logfile
✔	7BTi	30179	2021-05-04	2020-04-01	3.6	3.69	—	3.6	0.010	0.86	0.0	0.06	16.57	0.01	2.083	5.58	10.93	5.7	94.1	0.2	-4.46	0.75	0.88	2.31	3.6	0.003	0.63	0.0	0.04	15.29	0.00	2.059	8.12	0.19	5.5	94.5	0.0	-1.01	0.55	0.74	0.88	1.96	14650	1860	13	0	10	0	0	logfile
✔	6PSS	20462	2021-05-06	2019-07-13	3.5	2.98	—	3.2	0.008	1.08	0.0	0.06	20.88	0.01	1.663	9.14	11.08	7.7	92.1	0.2	-4.70	0.62	0.74	1.37	3.2	0.003	0.66	0.0	0.04	20.20	0.00	2.108	13.82	0.42	6.0	93.9	0.1	-1.04	1.98	0.62	0.74	1.00	32361	3905	12	86	4	0	0	logfile
✔	6PSQ	20460	2021-05-06	2019-07-13	3.4	3.24	—	3.3	0.015	1.02	2.0	0.07	20.49	0.01	1.995	40.27	13.45	10.2	89.5	0.3	-4.43	0.73	0.80	1.57	3.3	0.003	0.65	0.0	0.04	19.77	0.00	2.070	12.80	0.27	5.8	94.1	0.1	-0.75	1.50	0.73	0.81	1.08	32777	3904	13	100	8	0	0	logfile
✔	6PSV	20465	2021-05-06	2019-07-13	3.5	3.19	—	3.3	0.016	1.02	0.0	0.07	19.93	0.01	1.959	40.18	11.23	11.1	88.7	0.1	-4.43	0.67	0.79	1.74	3.4	0.003	0.67	0.0	0.04	19.66	0.00	2.115	12.25	0.37	6.0	94.0	0.1	-0.85	0.72	0.66	0.78	1.38	32331	3830	14	105	8	0	0	logfile
✔	6PST	20463	2021-05-05	2019-07-13	3.0	3.10	—	3.1	0.016	0.94	0.0	0.07	19.38	0.01	1.777	36.11	13.13	8.0	91.7	0.3	-3.42	0.70	0.82	2.00	3.1	0.003	0.67	0.0	0.04	20.12	0.00	2.111	11.73	5.98	4.8	95.2	0.0	-0.07	1.51	0.69	0.82	1.64	31452	3726	13	101	8	0	0	logfile
✔	6PSR	20461	2021-05-06	2019-07-13	3.4	3.14	—	3.3	0.014	0.91	0.0	0.07	19.89	0.00	1.411	37.70	10.51	10.3	89.6	0.1	-4.05	0.70	0.80	1.76	3.3	0.003	0.66	0.0	0.04	19.37	0.00	2.125	12.00	0.39	5.5	94.5	0.1	-0.72	1.47	0.71	0.81	1.36	32186	3902	14	71	8	0	0	logfile
✔	6ZNN	11318	2021-05-04	2020-07-06	4.5	5.10	4.05	4.4	0.014	1.77	0.0	0.09	13.07	0.00	1.790	1.72	0.00	7.7	92.2	0.1	-3.13	0.78	0.72	—	4.4	0.003	0.70	0.0	0.04	12.92	0.00	2.079	16.34	0.05	5.9	94.0	0.1	-0.29	1.06	0.81	0.82	—	19457	2320	17	0	328	0	0	logfile
✔	6WPK	21863	2021-05-06	2020-04-27	3.3	3.38	—	3.3	0.018	1.13	0.0	0.04	15.34	0.00	2.277	10.72	0.65	7.9	92.0	0.0	-3.83	0.75	0.84	2.02	3.3	0.004	0.76	0.0	0.04	16.40	0.01	2.327	7.26	0.27	6.3	93.7	0.0	0.54	0.46	0.74	0.83	1.41	33229	4376	8	0	0	0	0	logfile

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