Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6E0G	8947	2023-11-15	2018-07-06	2.9	2.97	—	3.0	0.010	1.03	0.0	0.06	10.04	0.01	2.030	9.03	0.00	6.7	92.6	0.6	-3.72	0.62	0.71	2.41	3.0	0.004	0.72	0.0	0.05	14.17	0.00	2.174	17.04	2.54	6.6	93.4	0.0	-0.92	1.63	0.61	0.73	2.57	12910	1650	10	0	0	0	0	logfile
✔	5MBV	3460	2023-11-18	2016-11-08	3.8	4.14	—	3.8	0.002	0.51	0.0	0.04	10.21	0.00	2.172	7.06	0.74	4.7	95.2	0.1	-3.37	0.87	0.81	0.98	3.8	0.004	0.71	0.0	0.04	13.50	0.00	2.114	12.19	0.23	3.9	96.0	0.0	1.12	0.89	0.88	0.83	1.41	24118	3014	5	0	0	0	0	logfile
✔	6QQ6	4619	2023-11-15	2019-02-17	3.3	3.40	—	3.4	0.007	1.08	2.0	0.05	15.09	0.01	1.924	5.07	0.00	6.4	93.6	0.0	-5.08	0.67	0.80	2.41	3.4	0.003	0.64	0.0	0.04	15.44	0.00	2.011	9.01	0.09	5.7	94.3	0.0	-0.19	1.34	0.69	0.84	2.09	12123	1486	6	0	13	18	0	logfile
✔	7JWY	22515	2023-11-19	2020-08-26	2.5	2.64	2.53	2.6	0.011	1.20	0.0	0.07	13.92	0.01	2.248	2.44	0.11	6.1	93.9	0.0	-2.72	0.75	0.83	3.94	2.6	0.003	0.60	0.0	0.05	15.19	0.00	2.125	4.26	0.61	3.4	96.6	0.0	-0.06	0.40	0.74	0.86	3.24	25860	3178	26	0	64	119	0	logfile
✔	8GXX	34364	2023-11-20	2022-09-21	3.0	2.61	3.12	2.9	0.006	0.56	0.0	0.04	11.56	0.00	1.758	5.57	0.06	3.0	96.9	0.0	0.65	0.67	0.82	3.77	2.8	0.003	0.59	0.0	0.04	16.97	0.00	1.956	7.51	2.76	2.1	97.9	0.0	0.94	1.10	0.74	0.85	3.19	29553	3788	15	0	5	0	0	logfile
✔	7PDG	13337	2023-11-14	2021-08-05	4.3	4.51	—	3.1	0.005	0.82	0.0	0.05	14.59	0.00	2.161	16.17	0.00	5.2	94.8	0.0	-0.49	0.58	0.72	—	3.1	0.003	0.73	0.0	0.04	14.74	0.00	2.173	12.63	0.00	4.3	95.7	0.0	0.21	0.88	0.58	0.72	—	7642	970	2	0	0	0	0	logfile
✔	8FYF	29572	2023-11-15	2023-01-26	3.4	3.26	3.38	3.4	0.003	0.58	0.0	0.04	14.09	0.00	2.218	5.61	0.14	2.7	97.3	0.0	2.89	0.57	0.83	1.72	3.3	0.003	0.52	0.0	0.04	14.55	0.00	2.209	5.68	0.14	2.4	97.6	0.0	3.58	0.93	0.55	0.85	1.53	13202	830	4	0	0	0	6754	logfile
✔	7TXi	26158	2023-11-20	2022-02-09	3.5	3.86	—	3.7	0.008	0.99	0.0	0.05	12.09	0.01	0.409	13.97	0.00	5.7	93.8	0.5	1.39	0.53	0.82	2.16	3.6	0.003	0.80	0.0	0.05	15.08	0.01	2.129	11.75	0.22	6.5	93.0	0.5	0.91	1.29	0.54	0.83	2.34	28660	3920	20	0	0	0	0	logfile
✔	6VFL	21186	2023-11-16	2020-01-05	4.14	4.24	4.09	4.2	0.020	1.69	0.0	0.10	10.16	0.01	2.247	1.36	0.20	1.4	98.6	0.0	0.90	0.77	0.84	—	4.2	0.007	0.83	0.0	0.05	13.18	0.00	2.054	11.25	0.00	4.1	95.9	0.0	0.15	0.85	0.77	0.85	—	14925	1710	42	0	102	0	0	logfile
✔	7TYN	26188	2023-11-14	2022-02-13	2.6	2.72	2.56	2.8	0.011	0.62	1.0	0.05	13.17	0.00	2.216	5.53	2.01	1.2	98.8	0.0	-2.90	0.67	0.81	3.62	2.8	0.003	0.58	0.0	0.04	16.12	0.00	2.186	6.18	2.64	2.4	97.6	0.0	1.10	0.48	0.67	0.83	2.98	9364	1154	7	0	18	0	0	logfile
✔	8DMB	27533	2023-11-16	2022-07-08	3.1	3.10	3.12	3.1	0.005	0.91	0.0	0.05	15.85	0.01	2.091	0.28	0.74	2.5	97.5	0.0	0.39	0.69	0.81	4.57	3.1	0.003	0.56	0.0	0.03	16.37	0.01	1.919	3.44	0.00	2.5	97.5	0.0	0.46	0.54	0.70	0.83	4.36	14225	328	5	275	2	0	5728	logfile
✔	7PBW	13307	2023-11-14	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	7NPU	12521	2023-11-17	2021-02-28	4.48	4.74	4.43	3.8	0.008	1.19	0.0	0.06	11.87	0.01	2.086	1.37	0.37	1.8	98.1	0.1	-0.61	0.66	0.68	—	3.8	0.003	0.60	0.0	0.04	12.55	0.00	1.902	8.02	0.00	2.8	97.2	0.0	1.44	3.28	0.69	0.76	—	126727	8230	24	0	0	0	64397	logfile
✔	7RZ9	24755	2023-11-19	2021-08-27	4.15	3.58	—	4.1	0.007	0.98	0.0	0.05	10.41	0.01	2.264	3.46	0.26	5.6	94.4	0.0	-5.15	0.68	0.80	—	4.1	0.003	0.60	0.0	0.04	13.04	0.00	2.174	8.74	0.00	3.5	96.5	0.0	0.04	1.16	0.69	0.78	—	27934	3550	4	0	0	0	0	logfile
✔	8DE7	27386	2023-11-13	2022-06-20	3.27	4.01	3.23	3.8	0.006	1.05	0.0	0.06	15.00	0.01	2.304	8.39	0.90	2.1	97.9	0.0	4.08	0.61	0.78	1.97	3.8	0.005	1.04	0.0	0.05	16.61	0.01	2.034	22.33	0.67	3.3	96.7	0.0	1.70	1.46	0.58	0.77	1.03	4168	526	4	0	4	0	0	logfile
✔	6X68	22073	2023-11-15	2020-05-27	3.66	3.88	—	3.8	0.012	1.74	10.0	0.09	20.68	0.01	1.652	4.17	0.57	2.5	97.2	0.3	-0.38	0.72	0.77	1.47	3.8	0.004	0.82	0.0	0.04	23.13	0.01	2.151	10.76	0.23	5.1	94.9	0.0	-0.30	0.85	0.67	0.80	0.94	10246	956	7	124	8	0	0	logfile
✔	7F24	31427	2023-11-15	2021-06-10	4.16	4.05	—	4.0	0.009	1.05	0.0	0.06	15.53	0.01	2.076	24.77	0.65	5.1	94.8	0.1	-2.40	0.69	0.76	—	4.0	0.003	0.72	0.0	0.05	14.76	0.00	2.180	18.15	0.26	3.8	96.2	0.0	0.02	1.38	0.69	0.75	—	7165	900	6	0	2	0	0	logfile
✔	7S7B	24882	2023-11-18	2021-09-15	4.06	3.82	—	3.6	0.004	0.46	0.0	0.04	10.74	0.00	1.963	8.58	1.54	7.9	92.1	0.0	0.42	0.81	0.80	—	3.6	0.004	0.63	0.0	0.04	12.64	0.00	2.184	10.11	0.04	6.2	93.8	0.0	0.46	0.62	0.82	0.81	—	22217	2709	10	22	2	0	0	logfile
✔	8CPW	16788	2023-11-21	2023-03-03	1.79	1.64	1.78	1.7	0.005	0.84	0.0	0.06	14.35	0.01	2.180	3.39	0.63	1.0	99.0	0.0	2.13	0.77	0.83	8.34	1.6	0.004	0.71	0.0	0.04	14.75	0.00	2.215	4.05	0.41	1.2	98.8	0.0	3.93	0.22	0.77	0.85	7.73	36004	4152	72	0	38	1886	0	logfile
✔	7QLA	14066	2023-11-14	2021-12-20	3.85	3.91	3.77	3.9	0.003	0.62	0.0	0.04	13.83	0.00	2.117	13.19	0.00	6.4	93.6	0.0	-1.33	0.72	0.76	1.18	3.8	0.003	0.76	0.0	0.04	15.73	0.00	2.136	14.14	0.41	5.3	94.7	0.0	-0.81	0.52	0.73	0.76	1.64	6837	874	2	0	0	0	0	logfile

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