Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6J9E	9785	2022-07-05	2019-01-22	3.41	3.55	3.48	3.5	0.003	0.61	0.0	0.04	14.31	0.01	2.198	2.49	0.05	3.0	97.0	0.0	-3.74	0.76	0.79	1.49	3.5	0.008	0.77	0.0	0.05	16.76	0.01	1.938	8.20	0.59	5.2	94.8	0.0	-0.33	0.65	0.81	0.85	1.88	24427	3203	11	63	3	0	0	logfile
✔	5JUY	8178	2022-07-05	2016-05-10	4.1	4.28	—	4.1	0.009	1.23	0.0	0.05	10.72	0.00	1.447	16.35	0.71	6.6	93.0	0.4	-3.18	0.76	0.55	—	4.1	0.007	0.85	0.0	0.05	12.71	0.00	2.047	18.43	0.02	8.0	91.9	0.1	-1.50	2.17	0.85	0.70	—	76058	9461	32	0	14	0	0	logfile
✔	6SWY	10333	2022-07-04	2019-09-24	3.2	3.32	3.04	3.3	0.004	0.61	0.0	0.04	13.89	0.00	1.332	5.95	0.23	6.0	94.0	0.1	-2.04	0.79	0.87	2.74	3.3	0.003	0.54	0.0	0.04	15.56	0.00	2.244	5.47	0.47	4.8	95.2	0.0	1.28	0.42	0.78	0.87	2.45	16060	1876	5	0	154	0	0	logfile
✔	6P9Y	20278	2022-07-03	2019-06-10	3.01	3.22	2.89	3.2	0.005	0.68	0.0	0.05	12.48	0.00	2.246	9.33	0.81	3.0	97.0	0.0	-4.06	0.68	0.83	3.78	3.2	0.003	0.59	0.0	0.04	15.09	0.00	2.100	7.38	0.46	3.0	97.0	0.0	-0.12	0.96	0.68	0.85	3.08	7994	998	6	0	0	0	0	logfile
✔	6PTJ	20471	2022-07-06	2019-07-15	3.8	4.13	—	4.0	0.008	1.12	1.0	0.06	14.87	0.01	2.011	6.49	0.39	10.6	89.2	0.2	-5.32	0.86	0.82	1.71	4.0	0.005	0.76	0.0	0.05	16.27	0.00	2.092	10.10	0.63	9.8	90.2	0.0	-2.23	0.76	0.86	0.82	1.40	34361	4280	14	0	0	0	0	logfile
✔	6TLJ	10516	2022-07-04	2019-12-02	3.8	4.18	—	4.0	0.008	0.89	0.0	0.04	15.17	0.00	2.042	21.94	0.18	8.5	91.2	0.2	-3.19	0.86	0.78	0.60	4.0	0.005	0.82	0.0	0.04	16.93	0.00	2.041	21.12	0.51	8.1	91.8	0.1	-0.15	2.01	0.86	0.78	0.53	72305	9200	23	0	0	0	0	logfile
✔	3J2P	5499	2022-07-03	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.70	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.95	0.0	0.05	17.92	0.01	1.899	74.82	1.47	22.8	73.8	3.4	-4.64	0.91	0.39	0.73	1.07	9890	1134	6	0	6	0	1086	logfile
✔	6D00	7782	2022-07-07	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	4.03	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	3.4	0.004	0.85	0.0	0.04	15.19	0.01	2.117	14.76	0.39	3.2	96.7	0.0	-0.43	1.59	0.83	0.68	—	38328	4824	12	0	12	0	0	logfile
✔	6R3Q	4719	2022-07-03	2019-03-20	3.4	3.77	—	3.5	0.011	1.24	0.0	0.07	12.61	0.01	2.080	6.09	0.58	6.7	93.3	0.0	-3.70	0.79	0.81	2.86	3.5	0.003	0.69	0.0	0.04	14.59	0.00	2.038	10.82	0.19	4.0	96.0	0.0	0.94	2.10	0.80	0.82	2.03	9529	1182	2	0	2	0	0	logfile
✔	6TTU	10585	2022-07-03	2019-12-30	3.7	3.87	3.69	3.8	0.006	0.88	0.0	0.05	15.10	0.00	1.312	13.81	0.29	9.3	90.7	0.0	-2.77	0.82	0.80	1.42	3.7	0.003	0.67	0.0	0.04	17.18	0.00	2.072	10.54	0.51	6.2	93.8	0.0	-0.12	1.64	0.82	0.81	1.31	12746	1604	9	0	3	0	0	logfile
✔	6QLF	4581	2022-07-04	2019-01-31	3.45	3.59	—	3.5	0.005	0.83	0.0	0.05	15.14	0.01	2.290	3.54	0.44	5.1	94.7	0.2	-3.91	0.75	0.82	2.21	3.5	0.003	0.60	0.0	0.04	16.65	0.00	2.150	4.97	0.22	4.5	95.4	0.1	0.88	1.22	0.77	0.84	1.72	13501	1783	8	0	0	0	0	logfile
✔	6LQi	0946	2022-07-05	2020-01-13	4.5	4.59	—	4.5	0.003	0.77	0.0	0.04	13.59	0.01	2.203	10.88	0.40	6.4	93.4	0.2	-3.01	0.70	0.75	—	4.5	0.003	0.72	0.0	0.04	13.07	0.00	2.318	8.93	0.00	7.0	92.9	0.1	-0.29	1.55	0.71	0.75	—	26934	3903	3	0	0	0	0	logfile
✔	6Fo0	4286	2022-07-03	2018-02-05	4.1	4.16	2.43	4.1	0.012	0.96	0.0	0.05	8.97	0.01	2.040	5.64	0.00	10.2	89.8	0.1	-4.55	0.72	0.79	—	4.1	0.004	0.61	0.0	0.04	12.47	0.00	1.919	11.06	0.00	7.1	92.9	0.0	-1.14	2.41	0.74	0.81	—	61356	3910	24	0	8	0	30362	logfile
✔	6C26	7336	2022-07-04	2018-01-06	3.5	3.64	—	3.6	0.011	1.39	0.0	0.07	15.85	0.01	1.833	6.83	2.07	9.8	90.2	0.0	-4.59	0.67	0.80	3.65	3.6	0.005	0.78	0.0	0.04	15.92	0.00	2.165	5.46	0.33	5.9	94.1	0.0	-0.66	1.29	0.73	0.84	2.47	17188	2077	14	0	19	0	0	logfile
✔	4Ui9	2924	2022-07-04	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	20.05	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.005	0.86	0.0	0.04	17.12	0.00	2.077	16.87	0.37	5.9	93.7	0.4	0.78	3.18	0.89	0.84	1.18	66453	8472	25	0	5	0	0	logfile
✔	6QX7	4662	2022-07-05	2019-03-07	3.8	3.98	—	3.9	0.006	1.16	0.0	0.06	11.55	0.01	0.726	11.76	1.75	14.3	84.1	1.6	-4.94	0.63	0.59	1.19	3.9	0.006	1.03	0.0	0.05	17.46	0.01	2.015	20.71	0.40	13.0	86.6	0.4	-2.06	1.58	0.66	0.61	0.54	25164	3072	12	0	0	0	0	logfile
✔	6A6B	6988	2022-07-03	2018-06-27	3.07	3.41	2.07	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.007	0.80	0.0	0.05	13.63	0.00	2.135	20.16	1.11	10.7	89.3	0.0	-3.01	2.16	0.52	0.71	3.25	5256	756	12	0	0	0	0	logfile
✔	6CiJ	7480	2022-07-04	2018-02-24	3.9	4.19	—	3.9	0.003	0.58	0.0	0.04	19.42	0.00	2.055	13.61	2.25	3.6	96.4	0.0	-2.66	0.90	0.85	2.69	3.9	0.003	0.62	0.0	0.04	20.57	0.00	2.170	8.96	0.12	3.2	96.8	0.0	-0.05	1.24	0.90	0.87	2.56	20413	2045	13	212	4	0	0	logfile
✔	5YW8	6848	2022-07-08	2017-11-29	4.4	4.51	4.37	4.4	0.005	0.80	4.0	0.05	13.59	0.01	2.030	19.14	8.11	4.4	95.1	0.4	-2.46	0.64	0.70	—	4.3	0.003	0.73	0.0	0.04	12.82	0.00	2.164	13.88	0.00	4.5	95.5	0.1	0.64	3.93	0.65	0.75	—	50524	6520	16	0	8	0	0	logfile
✔	6B70	7062	2022-07-05	2017-10-03	3.7	4.28	4.09	4.1	0.011	1.26	0.0	0.07	11.30	0.01	2.192	6.38	0.00	4.0	96.0	0.0	-3.94	0.89	0.80	2.01	4.1	0.003	0.74	0.0	0.04	14.50	0.00	2.201	12.78	0.12	5.5	94.5	0.0	-0.61	0.77	0.89	0.81	1.42	22192	2783	8	0	0	0	0	logfile

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