Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oKN	12962	2023-08-19	2021-05-18	3.34	3.57	—	3.5	0.006	0.92	0.0	0.04	17.96	0.00	1.898	13.52	1.03	9.3	90.7	0.0	-2.82	0.61	0.66	1.09	3.5	0.008	0.80	0.0	0.05	17.87	0.00	2.129	13.57	0.89	8.2	91.8	0.0	-1.62	2.57	0.74	0.85	2.58	28067	3757	34	0	0	0	0	logfile
✔	6RD4	4805	2023-08-09	2019-04-12	2.9	2.95	—	2.9	0.014	1.11	0.0	0.07	14.22	0.01	0.776	6.62	0.69	4.7	95.0	0.2	-5.13	0.74	0.83	3.17	3.0	0.003	0.67	0.0	0.04	16.39	0.00	1.899	10.11	1.76	3.6	96.3	0.1	0.72	0.63	0.77	0.87	2.78	107552	14206	82	0	22	56	0	logfile
✔	7UKJ	26582	2023-08-13	2022-04-01	3.6	4.01	—	3.7	0.003	0.61	0.0	0.05	14.53	0.00	2.183	13.02	1.78	12.8	87.2	0.0	-2.80	0.74	0.85	2.36	3.7	0.002	0.56	0.0	0.05	15.21	0.00	2.241	11.45	1.97	10.7	89.3	0.0	-2.65	1.14	0.73	0.84	2.12	14196	1862	3	0	0	0	0	logfile
✔	7Wo9	32643	2023-08-12	2022-01-20	2.81	3.01	—	3.0	0.002	0.50	0.0	0.04	13.97	0.00	2.227	5.86	0.00	4.2	95.8	0.0	1.49	0.70	0.78	2.04	3.0	0.002	0.51	0.0	0.04	16.20	0.00	2.164	5.55	1.21	4.7	95.3	0.0	1.88	0.74	0.72	0.81	1.85	12743	1581	1	0	0	0	0	logfile
✔	7Xo4	33336	2023-08-22	2022-04-30	3.24	2.35	3.35	2.1	0.002	0.50	0.0	0.04	9.41	0.00	1.184	7.12	0.00	2.0	98.0	0.0	-2.83	0.52	0.40	1.77	2.1	0.004	0.68	0.0	0.05	14.23	0.00	2.169	9.38	0.43	4.5	95.5	0.0	-0.73	1.08	0.69	0.76	2.18	33410	4252	10	0	41	0	0	logfile
✔	7oKo	12963	2023-08-09	2021-05-18	3.4	3.63	—	3.6	0.006	0.84	11.0	0.05	13.64	0.01	2.010	13.03	0.92	14.4	85.5	0.2	-3.66	0.78	0.80	1.97	3.6	0.004	0.74	0.0	0.04	15.45	0.01	2.106	13.72	0.50	11.9	88.1	0.0	-2.99	0.61	0.78	0.82	1.72	54483	7124	65	0	0	0	0	logfile
✔	6REC	4849	2023-08-09	2019-04-12	3.3	3.39	3.31	3.3	0.011	1.02	0.0	0.06	14.40	0.01	2.140	5.40	0.37	4.8	95.1	0.1	-3.95	0.66	0.81	2.79	3.3	0.003	0.60	0.0	0.04	15.81	0.00	1.964	9.82	0.18	3.9	96.0	0.1	0.07	1.60	0.68	0.85	2.15	53756	7104	37	0	11	0	0	logfile
✔	7A6A	11668	2023-08-20	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.59	0.0	0.04	15.31	0.00	2.163	2.66	1.82	1.8	98.2	0.0	4.55	0.44	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7FiK	31600	2023-08-12	2021-07-31	3.7	3.41	—	2.2	0.007	0.98	1.0	0.05	9.93	0.00	1.868	3.44	3.73	6.0	93.8	0.2	-2.13	0.50	0.52	1.35	2.2	0.002	0.60	0.0	0.04	11.18	0.00	2.017	5.54	0.21	3.9	96.1	0.0	1.53	0.65	0.60	0.69	1.62	116163	19039	32	0	722	0	0	logfile
✔	7KRR	23011	2023-08-19	2020-11-20	3.5	3.55	—	3.4	0.016	1.97	18.0	0.15	13.84	0.01	1.621	7.32	2.53	7.1	92.1	0.8	-2.17	0.81	0.80	3.20	3.3	0.004	0.67	0.0	0.04	15.31	0.00	2.178	8.29	0.28	3.9	96.0	0.1	0.05	1.17	0.83	0.85	2.58	27192	3310	35	0	95	0	0	logfile
✔	7Z0T	14430	2023-08-16	2022-02-23	3.4	2.92	—	3.1	0.007	1.45	36.0	0.10	14.79	0.01	1.499	8.84	1.55	4.4	95.3	0.3	-2.09	0.69	0.80	2.69	3.1	0.003	0.58	0.0	0.04	16.04	0.00	2.125	10.08	0.38	3.9	96.0	0.0	-0.12	2.65	0.71	0.83	2.47	20634	2690	12	0	15	0	0	logfile
✔	7RQS	24635	2023-08-10	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.64	0.0	0.04	15.66	0.00	1.984	11.67	0.26	8.9	91.0	0.1	-1.05	0.58	0.71	0.69	2.23	7792	1074	1	0	1	0	0	logfile
✔	6SiC	10209	2023-08-11	2019-08-09	3.52	4.05	3.88	3.9	0.009	1.20	1.0	0.06	11.93	0.01	1.244	9.63	0.72	12.8	87.0	0.3	-4.93	0.72	0.75	1.86	3.9	0.003	0.86	0.0	0.05	16.13	0.00	2.048	20.76	0.50	9.8	90.2	0.0	-2.65	1.76	0.70	0.78	1.01	62079	7487	36	90	1	0	0	logfile
✔	7WP9	32679	2023-08-18	2022-01-23	2.56	2.20	—	1.9	0.004	0.78	1.0	0.05	14.32	0.01	2.294	4.05	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.66	0.0	0.05	16.46	0.00	2.108	9.33	2.25	5.2	94.8	0.0	-1.50	1.01	0.76	0.81	2.44	25077	3141	13	0	28	0	0	logfile
✔	7JJJ	22354	2023-08-10	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.79	0.0	0.13	10.01	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.71	0.0	0.05	12.38	0.00	2.113	11.30	0.00	4.0	96.0	0.0	-0.22	1.44	0.80	0.83	—	54614	6674	92	0	182	0	0	logfile
✔	7YJN	33875	2023-08-10	2022-07-20	3.4	3.63	3.43	3.6	0.019	1.74	21.0	0.13	15.89	0.01	1.776	26.04	8.37	11.1	87.0	1.9	-2.39	0.70	0.83	2.69	3.6	0.003	0.66	0.0	0.04	16.03	0.00	2.189	7.45	0.65	6.1	93.7	0.2	0.10	0.55	0.69	0.83	2.24	8528	1095	6	0	1	0	0	logfile
✔	7XDE	33145	2023-08-15	2022-03-26	2.72	3.00	2.86	3.1	0.011	0.82	0.0	0.05	13.03	0.00	2.110	8.62	0.63	1.2	98.8	0.0	0.38	0.68	0.81	3.27	3.1	0.003	0.48	0.0	0.04	15.72	0.00	2.132	8.20	1.42	1.6	98.4	0.0	0.92	1.11	0.64	0.80	2.93	17896	2248	8	0	4	0	0	logfile
✔	7Z4W	14509	2023-08-11	2022-03-05	2.7	2.53	—	2.5	0.006	0.89	2.0	0.06	14.33	0.01	2.223	2.01	0.16	3.7	96.2	0.1	-1.99	0.74	0.84	4.49	2.5	0.002	0.56	0.0	0.04	16.68	0.00	2.159	3.71	1.06	3.4	96.6	0.0	1.17	0.83	0.74	0.86	3.88	58942	7242	60	0	0	406	0	logfile
✔	7YD1	33745	2023-08-09	2022-07-02	2.99	2.38	7.99	2.2	0.002	0.49	0.0	0.04	9.00	0.00	2.215	6.14	5.46	10.0	90.0	0.0	-4.06	0.75	0.74	3.20	2.2	0.005	0.79	0.0	0.05	14.06	0.00	2.011	11.67	2.19	10.7	89.3	0.0	-2.01	0.64	0.77	0.79	3.04	3305	428	3	0	0	0	0	logfile
✔	7NSH	12567	2023-08-11	2021-03-07	3.2	3.39	3.12	3.3	0.003	0.53	0.0	0.05	15.69	0.00	1.187	7.76	0.02	4.2	95.8	0.1	0.71	0.80	0.84	2.70	3.3	0.002	0.55	0.0	0.04	16.92	0.00	1.115	8.46	0.33	4.0	96.0	0.0	0.81	0.52	0.79	0.89	2.50	112448	9643	79	1611	229	2	0	logfile

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