Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Boi	12244	2022-04-08	2021-01-25	2.98	3.76	2.97	2.9	0.008	0.77	3.0	0.05	14.52	0.02	1.934	16.29	0.00	3.6	96.4	0.0	-1.74	0.89	0.91	1.58	2.9	0.008	0.78	0.0	0.04	15.26	0.01	1.868	18.99	4.33	4.6	95.4	0.0	-0.41	0.51	0.89	0.92	1.67	35970	1617	16	1078	74	0	0	logfile
✔	7AFo	11772	2022-04-08	2020-09-19	3.93	5.33	3.93	3.2	0.014	1.98	7.0	0.10	16.54	0.04	1.857	1.91	0.71	4.2	95.8	0.0	-1.97	0.91	0.88	1.13	3.1	0.005	0.75	0.0	0.04	16.52	0.01	1.868	30.94	0.50	4.6	95.3	0.1	-1.15	2.54	0.91	0.89	0.46	34134	1691	16	971	20	0	0	logfile
✔	7LD5	23282	2022-04-05	2021-01-12	3.07	3.46	—	3.4	0.006	0.67	0.0	0.05	16.01	0.00	2.102	8.95	6.51	4.3	95.7	0.0	-2.06	0.77	0.82	2.94	3.4	0.003	0.55	0.0	0.04	15.94	0.00	2.160	7.17	0.29	2.4	97.6	0.0	1.02	0.35	0.74	0.82	2.96	13542	1761	9	15	6	0	0	logfile
✔	6XLB	22238	2022-04-05	2020-06-28	3.8	4.01	—	3.8	0.002	0.43	0.0	0.04	13.65	0.00	2.235	7.33	0.00	2.0	98.0	0.0	-2.43	0.82	0.77	1.14	3.8	0.004	0.73	0.0	0.05	16.18	0.00	2.094	18.24	0.48	3.1	96.9	0.0	-0.51	0.90	0.84	0.81	1.55	11180	1380	4	0	0	0	0	logfile
✔	7AF5	11753	2022-04-06	2020-09-19	2.96	3.21	2.95	2.9	0.008	0.74	2.0	0.05	14.96	0.02	1.876	10.20	0.00	4.6	95.4	0.0	-1.98	0.85	0.87	2.87	2.9	0.007	0.78	0.0	0.04	15.93	0.01	1.844	13.24	3.26	4.1	95.8	0.1	0.12	1.21	0.86	0.90	2.62	18531	1104	11	456	53	0	0	logfile
✔	7NYW	12656	2022-04-09	2021-03-23	3.1	3.76	3.13	3.2	0.003	0.50	0.0	0.04	18.04	0.00	1.891	6.07	0.00	3.7	96.3	0.0	1.43	0.83	0.79	1.86	3.2	0.003	0.49	0.0	0.04	18.54	0.00	1.855	6.50	0.08	3.6	96.4	0.0	2.00	0.47	0.84	0.83	1.82	48568	2795	18	104	6	0	23780	logfile
✔	7MBV	23748	2022-04-07	2021-04-01	2.8	3.34	—	3.0	0.019	0.73	0.0	0.09	13.24	0.01	2.280	6.88	0.00	2.3	97.7	0.0	1.48	0.77	0.82	3.83	3.1	0.004	0.57	0.0	0.04	14.88	0.00	2.310	6.52	1.45	2.6	97.4	0.0	2.06	0.45	0.74	0.90	3.46	30804	3984	8	0	24	0	0	logfile
✔	6XLG	22243	2022-04-05	2020-06-28	2.71	2.81	—	2.8	0.001	0.36	0.0	0.04	10.12	0.00	2.105	5.84	0.00	1.3	98.7	0.0	-3.01	0.73	0.81	4.05	2.8	0.003	0.56	0.0	0.04	16.65	0.00	2.000	8.70	1.78	2.2	97.8	0.0	-0.16	3.07	0.77	0.88	4.10	12258	1504	6	0	6	0	0	logfile
✔	7o3W	12710	2022-04-08	2021-04-03	4.9	6.81	5.80	7.1	0.017	1.84	0.0	0.11	18.08	0.01	0.360	24.19	0.30	3.5	96.4	0.2	1.74	0.66	0.54	—	7.1	0.004	0.93	0.0	0.04	15.63	0.01	1.980	27.90	0.02	1.7	98.2	0.1	1.48	2.40	0.75	0.81	—	138390	17976	98	0	14	0	0	logfile
✔	7o40	12713	2022-04-11	2021-04-03	4.3	6.44	4.63	6.7	0.017	1.92	1.0	0.11	18.05	0.01	0.592	10.79	1.09	2.1	97.3	0.7	3.48	0.59	0.48	—	6.7	0.004	0.96	0.0	0.05	15.30	0.00	2.032	26.40	0.02	1.6	98.3	0.1	1.66	2.04	0.73	0.83	—	168181	21862	119	0	17	0	0	logfile
✔	7F4G	31450	2022-04-07	2021-06-18	2.78	3.30	—	3.2	0.017	1.11	4.0	0.07	14.67	0.01	1.898	14.93	1.43	8.7	91.0	0.3	-3.97	0.69	0.81	3.30	3.2	0.003	0.68	0.0	0.05	16.88	0.00	2.124	11.59	2.69	5.6	94.4	0.0	-0.37	1.19	0.59	0.73	2.37	27957	3491	17	0	5	0	0	logfile
✔	7AFN	11771	2022-04-06	2020-09-19	3.86	5.27	3.89	3.0	0.009	1.02	3.0	0.07	17.92	0.02	1.755	23.03	0.00	6.9	93.1	0.0	-1.93	0.90	0.83	0.72	3.0	0.004	0.75	0.0	0.04	17.09	0.01	1.889	24.66	0.65	4.1	95.9	0.0	0.13	1.72	0.91	0.88	0.80	18520	1108	11	456	12	0	0	logfile
✔	7AFD	11761	2022-04-06	2020-09-19	3.44	4.47	3.35	2.4	0.009	0.89	3.0	0.05	16.75	0.02	1.850	29.99	0.00	6.2	93.8	0.0	-2.70	0.89	0.85	0.96	2.3	0.004	0.76	0.0	0.04	16.84	0.01	1.858	25.08	0.98	5.1	94.8	0.1	-0.74	1.33	0.90	0.88	1.39	18531	1108	12	456	23	0	0	logfile
✔	7AFH	11765	2022-04-06	2020-09-19	3.59	4.69	6.66	2.8	0.009	0.89	2.0	0.05	16.84	0.02	1.752	32.72	0.00	7.5	92.5	0.0	-2.59	0.88	0.82	0.54	2.8	0.008	0.90	0.0	0.04	17.27	0.01	1.692	35.19	0.98	5.6	94.4	0.0	-1.09	1.30	0.89	0.86	0.80	18482	1103	11	456	12	0	0	logfile
✔	7AFK	11768	2022-04-06	2020-09-19	4.9	5.45	4.73	3.0	0.008	0.88	1.0	0.05	18.40	0.02	1.519	42.19	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	2.7	0.004	0.73	0.0	0.04	17.62	0.01	1.846	36.58	0.00	5.7	94.3	0.0	-1.09	0.77	0.88	0.85	—	18521	1108	11	456	13	0	0	logfile
✔	7AFA	11758	2022-04-06	2020-09-19	2.95	3.82	2.97	2.9	0.008	0.80	6.0	0.05	14.29	0.02	1.456	11.42	0.00	2.9	97.1	0.0	-1.10	0.86	0.88	1.92	2.9	0.007	0.88	0.0	0.04	15.42	0.01	1.828	21.06	2.94	4.3	95.7	0.0	-0.18	1.27	0.87	0.91	1.91	18482	1101	11	456	26	0	0	logfile
✔	7AFL	11769	2022-04-08	2020-09-19	4.2	5.13	4.56	3.0	0.010	1.08	6.0	0.06	17.44	0.01	1.852	43.68	0.00	6.0	94.0	0.0	-1.84	0.89	0.87	—	2.8	0.006	0.72	0.0	0.04	16.52	0.01	1.822	40.79	0.00	6.1	93.9	0.0	-1.34	0.73	0.89	0.88	—	34322	1487	15	1054	25	0	0	logfile
✔	7AFi	11766	2022-04-08	2020-09-19	3.53	4.65	3.55	2.4	0.011	0.99	8.0	0.06	16.69	0.01	1.836	33.77	0.00	9.0	91.0	0.0	-2.95	0.91	0.89	0.98	2.4	0.005	0.68	0.0	0.03	16.15	0.01	1.855	27.11	1.57	4.8	95.2	0.0	-0.92	1.29	0.91	0.89	0.84	33803	1387	14	1066	46	0	0	logfile
✔	7NAS	12246	2022-04-08	2021-01-25	3.31	4.38	7.71	2.7	0.009	0.80	3.0	0.05	15.55	0.01	1.629	25.97	0.00	8.1	91.9	0.0	-3.73	0.90	0.90	1.47	2.7	0.008	0.80	0.0	0.04	16.02	0.01	1.729	30.72	0.75	6.2	93.8	0.0	-1.33	1.21	0.90	0.91	1.44	32390	1454	15	974	43	0	0	logfile
✔	7AF8	11756	2022-04-06	2020-09-19	2.75	3.17	2.81	2.9	0.006	0.62	4.0	0.04	13.77	0.02	2.002	6.53	0.00	3.6	96.4	0.0	-0.93	0.84	0.87	2.54	2.9	0.003	0.68	0.0	0.04	15.16	0.01	1.953	9.84	4.02	4.3	95.6	0.1	0.98	0.53	0.85	0.90	2.15	18565	1109	11	456	52	0	0	logfile

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