Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GJ1	0009	2021-08-08	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.67	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.88	0.0	0.05	12.66	0.01	2.092	18.77	0.14	14.7	85.2	0.1	-3.78	1.28	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	6oSM	20186	2021-08-07	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.007	1.22	0.0	0.07	15.32	0.00	2.228	25.45	1.46	28.3	71.7	0.0	-5.24	3.40	0.45	0.75	2.88	4100	600	10	0	0	0	0	logfile
✔	3iZK	5247	2021-08-09	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.11	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.75	0.0	0.04	13.50	0.00	2.178	24.16	0.00	2.8	97.2	0.0	0.27	1.97	0.80	0.69	—	58448	7856	16	0	0	0	0	logfile
✔	6iJo	9680	2021-08-11	2018-10-10	3.3	3.39	—	3.3	0.021	2.69	0.0	0.28	20.55	0.03	2.074	9.05	0.41	7.6	92.4	0.0	-4.92	0.65	0.79	3.27	3.3	0.007	1.30	0.0	0.08	20.23	0.01	1.905	20.05	0.12	6.3	93.7	0.0	-0.63	1.61	0.66	0.81	2.38	49685	4382	41	0	333	0	0	logfile
✔	6iJJ	9678	2021-08-11	2018-10-10	2.89	3.01	—	3.0	0.020	2.58	0.0	0.27	20.53	0.03	2.060	8.98	0.42	6.5	93.3	0.1	-3.85	0.74	0.84	3.94	3.0	0.004	1.17	0.0	0.08	20.54	0.01	1.394	18.09	3.07	5.2	94.8	0.0	-0.13	1.18	0.75	0.87	3.00	44968	3889	33	0	299	0	0	logfile
✔	6C6L	7348	2021-08-09	2018-01-19	3.5	4.12	4.07	4.1	0.006	1.03	0.0	0.06	11.47	0.01	2.224	4.42	0.34	2.5	97.5	0.0	-4.23	0.64	0.76	2.09	4.1	0.004	0.76	0.0	0.04	15.59	0.01	2.155	12.33	0.43	3.4	96.6	0.0	-0.23	1.46	0.68	0.77	0.93	22110	2918	15	0	0	0	0	logfile
✔	6NF4	9360	2021-08-07	2018-12-18	2.98	3.35	—	3.3	0.036	2.37	0.0	0.49	16.04	0.01	2.379	2.34	0.27	3.2	96.8	0.0	0.16	0.69	0.84	3.04	3.3	0.003	0.90	0.0	0.10	16.10	0.00	2.220	16.20	1.36	4.4	95.6	0.0	3.54	1.17	0.59	0.83	1.78	6960	842	4	0	8	0	0	logfile
✔	6PQX	20455	2021-08-07	2019-07-10	4.6	4.84	—	4.7	0.006	0.99	0.0	0.06	23.23	0.01	2.222	16.07	2.35	5.2	94.1	0.6	-3.41	0.78	0.79	—	4.7	0.003	0.67	0.0	0.04	22.96	0.01	2.101	17.68	0.00	5.4	94.6	0.0	-0.80	1.66	0.76	0.74	—	10116	960	10	120	4	0	0	logfile
✔	6iFK	9653	2021-08-09	2018-09-20	3.2	3.32	—	3.3	0.009	1.17	1.0	0.06	12.95	0.01	2.046	6.36	1.01	10.7	89.0	0.3	-4.87	0.74	0.82	3.58	3.3	0.004	0.67	0.0	0.04	16.30	0.00	1.965	12.16	0.21	9.7	90.2	0.0	-1.91	0.72	0.76	0.84	2.70	19448	2256	11	67	5	0	0	logfile
✔	5WFS	8829	2021-08-18	2017-07-12	3.0	3.09	3.13	3.0	0.008	1.18	2.0	0.10	18.12	0.02	1.324	4.18	3.10	9.3	88.2	2.4	-4.11	0.73	0.77	2.42	3.0	0.004	0.75	0.0	0.04	17.24	0.01	1.179	12.35	3.19	8.2	91.3	0.5	-1.61	0.72	0.76	0.80	2.31	155100	6324	114	4802	1479	1175	0	logfile
✔	5XMi	6733	2021-08-08	2017-05-15	3.9	3.93	—	3.9	0.009	1.29	3.0	0.07	13.03	0.01	2.342	1.57	1.10	8.9	88.6	2.5	-3.05	0.61	0.63	0.60	3.9	0.011	1.04	0.0	0.04	17.12	0.01	2.076	19.20	0.74	8.6	91.1	0.3	-1.04	1.86	0.65	0.68	0.64	14969	1914	11	0	5	0	0	logfile
✔	6iFY	9658	2021-08-08	2018-09-21	3.8	4.00	—	3.9	0.005	1.03	3.0	0.06	15.92	0.01	1.733	12.33	0.81	10.7	89.0	0.3	-5.14	0.71	0.73	1.09	3.9	0.004	0.77	0.0	0.04	17.66	0.00	2.101	21.08	0.71	9.2	90.7	0.1	-2.58	1.72	0.72	0.75	0.86	19085	2253	11	62	1	0	0	logfile
✔	5ZYA	6915	2021-08-08	2018-05-23	3.95	4.18	—	4.1	0.009	1.35	0.0	0.16	11.13	0.01	1.673	8.56	0.32	9.6	90.4	0.0	-4.57	0.67	0.52	0.10	4.0	0.012	1.24	0.0	0.06	15.53	0.01	1.726	22.92	0.49	7.4	92.6	0.0	-2.01	1.76	0.77	0.73	0.98	16957	2143	7	0	5	0	0	logfile
✔	5X5F	6707	2021-08-09	2017-02-15	4.2	4.29	—	4.2	0.011	1.72	6.0	0.08	14.74	0.01	1.433	32.45	5.99	13.0	85.5	1.4	-3.79	0.66	0.57	—	4.2	0.003	0.99	0.0	0.05	12.72	0.01	2.099	19.27	0.00	12.3	87.5	0.2	-2.28	1.23	0.71	0.70	—	26422	3423	3	0	0	0	0	logfile
✔	6RVY	10018	2021-08-07	2019-06-03	4.13	4.25	4.04	4.1	0.006	1.03	0.0	0.06	14.69	0.01	2.290	6.72	0.49	7.5	92.5	0.0	-5.00	0.64	0.81	—	4.1	0.004	0.76	0.0	0.04	13.30	0.00	2.305	13.14	0.00	5.2	94.8	0.0	0.02	0.73	0.64	0.81	—	9627	1290	3	0	0	0	0	logfile
✔	6iFL	9654	2021-08-08	2018-09-20	3.16	3.26	—	3.2	0.010	1.27	0.0	0.07	13.06	0.01	2.201	6.56	1.10	12.2	87.4	0.4	-4.69	0.74	0.81	3.15	3.2	0.004	0.75	0.0	0.04	16.54	0.00	2.102	14.57	0.33	10.7	89.3	0.0	-1.49	2.45	0.76	0.84	2.20	18845	2193	10	70	0	0	0	logfile
✔	6iFR	9656	2021-08-08	2018-09-21	3.4	3.49	—	3.4	0.007	1.16	3.0	0.06	12.48	0.01	1.558	8.77	1.13	12.0	87.7	0.3	-5.42	0.75	0.80	3.14	3.4	0.003	0.69	0.0	0.04	16.11	0.00	2.061	14.88	0.43	10.0	89.9	0.0	-2.11	1.36	0.76	0.82	2.17	19219	2216	11	70	4	0	0	logfile
✔	3JD8	6640	2021-08-08	2016-05-01	4.43	4.58	—	4.4	0.018	1.55	5.0	0.24	16.78	0.02	1.335	75.85	11.82	11.9	79.6	8.5	-3.29	0.54	0.62	—	4.4	0.004	0.94	0.0	0.08	12.33	0.00	2.102	19.30	0.00	8.3	90.7	1.1	-0.52	1.31	0.57	0.73	—	8050	1133	1	0	25	0	0	logfile
✔	6K4Y	9916	2021-08-10	2019-05-27	3.79	3.88	—	3.9	0.008	0.99	0.0	0.06	14.87	0.01	2.242	8.93	0.68	7.6	92.3	0.1	-4.54	0.61	0.69	1.81	3.8	0.006	0.77	0.0	0.05	17.93	0.01	2.030	12.24	0.47	7.7	92.3	0.0	-1.20	1.59	0.71	0.78	1.29	33247	3950	11	105	3	0	0	logfile
✔	5SY1	8315	2021-08-08	2016-08-10	3.9	3.66	3.96	3.8	0.013	1.04	0.0	0.24	10.05	0.01	1.524	5.60	0.08	7.1	92.7	0.1	-5.23	0.51	0.62	1.65	3.7	0.003	0.87	0.0	0.09	15.34	0.00	2.106	10.12	0.16	5.0	95.0	0.0	0.69	0.99	0.62	0.77	0.88	11462	1458	8	0	10	0	0	logfile

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