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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XR4 | 33407 | 2023-02-19 | 2022-05-09 | 3.4 | 3.26 | 3.35 | 3.4 | 0.007 | 0.94 | 0.0 | 0.05 | 14.23 | 0.00 | 2.304 | 10.91 | 0.29 | 2.1 | 97.9 | 0.0 | 1.68 | 0.73 | 0.85 | 1.65 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 15.09 | 0.00 | 2.237 | 10.24 | 0.19 | 1.3 | 98.7 | 0.0 | 3.19 | 1.07 | 0.71 | 0.85 | 1.38 | 10026 | 1278 | 6 | 0 | 27 | 0 | 0 | logfile |
✔ | 6UA2 | 20704 | 2023-02-28 | 2019-09-10 | 4.2 | 4.44 | 4.05 | 4.4 | 0.017 | 1.74 | 0.0 | 0.08 | 16.71 | 0.01 | 2.191 | 14.11 | 4.10 | 11.3 | 88.7 | 0.1 | -4.76 | 0.65 | 0.78 | — | 4.4 | 0.003 | 0.92 | 0.0 | 0.05 | 14.43 | 0.01 | 2.104 | 22.04 | 0.00 | 8.5 | 91.4 | 0.0 | -2.75 | 1.68 | 0.64 | 0.76 | — | 31660 | 4016 | 24 | 0 | 36 | 0 | 0 | logfile |
✔ | 7VHQ | 32003 | 2023-02-22 | 2021-09-22 | 3.27 | 3.68 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 13.43 | 0.00 | 2.165 | 9.53 | 0.00 | 3.1 | 96.9 | 0.0 | 1.82 | 0.73 | 0.82 | 1.67 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.43 | 0.00 | 2.148 | 10.42 | 0.61 | 4.1 | 95.9 | 0.0 | 1.79 | 0.42 | 0.74 | 0.85 | 1.46 | 16650 | 2076 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DMQ | 30767 | 2023-02-19 | 2020-12-05 | 3.06 | 3.15 | — | 3.1 | 0.005 | 0.96 | 0.0 | 0.05 | 13.95 | 0.01 | 2.238 | 3.76 | 0.62 | 9.8 | 90.2 | 0.0 | -5.19 | 0.70 | 0.73 | 2.74 | 3.1 | 0.003 | 0.66 | 0.0 | 0.04 | 16.42 | 0.00 | 2.117 | 10.38 | 0.25 | 10.2 | 89.8 | 0.0 | -1.79 | 1.43 | 0.77 | 0.79 | 1.91 | 9444 | 937 | 3 | 88 | 0 | 0 | 0 | logfile |
✔ | 6P6W | 20265 | 2023-02-18 | 2019-06-04 | 4.0 | 4.40 | — | 4.4 | 0.005 | 1.00 | 0.0 | 0.06 | 15.27 | 0.01 | 2.265 | 5.77 | 0.60 | 7.5 | 92.5 | 0.0 | -5.12 | 0.72 | 0.74 | — | 4.4 | 0.004 | 1.01 | 0.0 | 0.05 | 17.40 | 0.00 | 2.172 | 21.71 | 0.96 | 7.0 | 93.0 | 0.0 | -0.11 | 0.85 | 0.73 | 0.75 | — | 7468 | 916 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NoG | 0468 | 2023-02-23 | 2019-01-16 | 3.9 | 4.05 | 4.50 | 3.9 | 0.009 | 1.12 | 1.0 | 0.06 | 26.55 | 0.01 | 2.239 | 6.27 | 0.84 | 4.1 | 95.9 | 0.0 | -1.83 | 0.84 | 0.81 | 0.53 | 3.9 | 0.004 | 0.63 | 0.0 | 0.03 | 26.62 | 0.00 | 2.153 | 11.24 | 0.32 | 2.2 | 97.8 | 0.0 | 1.84 | 1.76 | 0.86 | 0.85 | 0.51 | 14929 | 1124 | 12 | 292 | 0 | 0 | 0 | logfile |
✔ | 5YYS | 6859 | 2023-02-24 | 2017-12-11 | 4.2 | 4.57 | — | 4.1 | 0.016 | 2.26 | 0.0 | 0.10 | 15.30 | 0.01 | 2.201 | 22.76 | 2.34 | 27.3 | 70.1 | 2.6 | -5.98 | 0.85 | 0.71 | — | 4.1 | 0.005 | 1.30 | 0.0 | 0.06 | 12.76 | 0.01 | 2.047 | 36.43 | 0.00 | 24.1 | 75.3 | 0.6 | -3.96 | 1.66 | 0.87 | 0.73 | — | 24044 | 3244 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D10 | 30542 | 2023-02-17 | 2020-09-12 | 3.52 | 3.70 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.06 | 10.87 | 0.01 | 2.249 | 4.93 | 0.00 | 8.9 | 90.6 | 0.5 | -6.70 | 0.65 | 0.83 | 3.73 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.88 | 0.00 | 2.238 | 7.52 | 0.34 | 6.4 | 93.6 | 0.0 | -1.75 | 1.20 | 0.63 | 0.83 | 2.64 | 6424 | 892 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6Qi8 | 4552 | 2023-02-21 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.27 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | 9.9 | 0.003 | 0.85 | 0.0 | 0.04 | 17.56 | 0.00 | 2.143 | 15.66 | 0.19 | 7.7 | 92.3 | 0.0 | -2.16 | 1.53 | 0.32 | 0.22 | 0.51 | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6L7A | 0841 | 2023-02-23 | 2019-11-01 | 3.38 | 3.58 | — | 3.5 | 0.005 | 0.84 | 0.0 | 0.05 | 14.70 | 0.01 | 2.395 | 4.54 | 0.42 | 5.1 | 94.9 | 0.0 | -4.67 | 0.75 | 0.84 | 2.76 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 16.32 | 0.00 | 2.225 | 8.97 | 0.09 | 3.6 | 96.4 | 0.0 | 0.31 | 0.62 | 0.73 | 0.84 | 1.73 | 19701 | 2538 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XMX | 22265 | 2023-02-22 | 2020-07-01 | 3.7 | 3.86 | 3.66 | 3.8 | 0.012 | 1.12 | 0.0 | 0.06 | 16.36 | 0.01 | 2.154 | 7.37 | 0.89 | 1.7 | 98.3 | 0.0 | -1.34 | 0.61 | 0.54 | 1.48 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 17.24 | 0.00 | 1.936 | 14.13 | 0.22 | 2.7 | 97.3 | 0.0 | 1.87 | 1.31 | 0.63 | 0.61 | 0.82 | 16014 | 976 | 16 | 0 | 8 | 0 | 7942 | logfile |
✔ | 6VX5 | 21430 | 2023-02-20 | 2020-02-21 | 3.03 | 3.58 | — | 3.5 | 0.006 | 0.80 | 0.0 | 0.05 | 14.27 | 0.00 | 2.348 | 4.97 | 0.00 | 3.3 | 96.7 | 0.0 | -6.15 | 0.72 | 0.84 | 2.92 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 16.41 | 0.00 | 2.259 | 9.26 | 0.50 | 1.6 | 98.4 | 0.0 | -0.38 | 1.27 | 0.67 | 0.80 | 2.34 | 13056 | 1575 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6RT0 | 4994 | 2023-02-17 | 2019-05-22 | 3.1 | 3.18 | — | 3.1 | 0.006 | 0.97 | 0.0 | 0.06 | 14.23 | 0.00 | 2.415 | 2.11 | 1.06 | 11.5 | 88.5 | 0.0 | -3.76 | 0.71 | 0.84 | 6.51 | 3.1 | 0.009 | 0.89 | 0.0 | 0.06 | 16.41 | 0.00 | 2.255 | 5.41 | 0.43 | 17.4 | 82.6 | 0.0 | -4.13 | 0.82 | 0.72 | 0.86 | 5.76 | 4925 | 735 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 5BKJ | 9406 | 2023-02-22 | 2021-03-19 | 3.5 | 3.68 | — | 3.7 | 0.006 | 0.81 | 0.0 | 0.06 | 14.99 | 0.00 | 2.251 | 4.94 | 1.09 | 4.1 | 95.9 | 0.0 | -3.93 | 0.69 | 0.84 | 2.13 | 3.7 | 0.002 | 0.52 | 0.0 | 0.05 | 16.34 | 0.00 | 2.242 | 7.50 | 0.33 | 2.0 | 98.0 | 0.0 | 0.25 | 1.63 | 0.69 | 0.83 | 1.97 | 16939 | 2156 | 16 | 0 | 7 | 4 | 0 | logfile |
✔ | 7W0B | 32237 | 2023-02-20 | 2021-11-18 | 3.33 | 3.61 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 14.32 | 0.00 | 2.049 | 11.71 | 0.00 | 5.0 | 94.9 | 0.1 | 0.14 | 0.84 | 0.79 | 1.45 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 16.03 | 0.00 | 2.154 | 12.02 | 0.14 | 4.4 | 95.5 | 0.1 | 0.34 | 0.46 | 0.84 | 0.79 | 1.67 | 12997 | 1602 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HUJ | 0279 | 2023-02-21 | 2018-10-08 | 3.04 | 3.16 | 3.04 | 3.1 | 0.005 | 0.86 | 0.0 | 0.06 | 8.71 | 0.01 | 2.265 | 4.61 | 0.00 | 4.0 | 96.0 | 0.0 | -4.37 | 0.76 | 0.83 | 4.82 | 3.1 | 0.005 | 0.60 | 0.0 | 0.04 | 13.75 | 0.00 | 2.161 | 7.75 | 0.31 | 3.5 | 96.5 | 0.0 | -0.11 | 0.65 | 0.76 | 0.87 | 4.18 | 15255 | 1812 | 15 | 0 | 35 | 0 | 0 | logfile |
✔ | 7L49 | 23158 | 2023-02-20 | 2020-12-18 | 3.1 | 3.16 | — | 3.1 | 0.005 | 0.95 | 0.0 | 0.06 | 18.53 | 0.01 | 2.220 | 6.19 | 0.00 | 8.6 | 91.4 | 0.0 | -3.90 | 0.74 | 0.76 | 2.18 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 18.60 | 0.00 | 2.164 | 12.59 | 0.22 | 7.3 | 92.7 | 0.0 | -0.56 | 1.17 | 0.76 | 0.82 | 2.70 | 12414 | 1041 | 8 | 191 | 4 | 0 | 0 | logfile |
✔ | 8AUR | 15673 | 2023-02-17 | 2022-08-25 | 3.47 | 3.44 | 3.63 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 13.41 | 0.00 | 2.350 | 6.62 | 0.00 | 5.6 | 94.4 | 0.0 | -1.30 | 0.72 | 0.82 | 2.41 | 3.5 | 0.004 | 0.66 | 0.0 | 0.04 | 16.10 | 0.00 | 2.233 | 7.09 | 0.00 | 9.4 | 90.5 | 0.1 | -1.38 | 1.66 | 0.71 | 0.83 | 2.56 | 5409 | 699 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W18 | 21503 | 2023-02-20 | 2020-03-03 | 4.2 | 4.20 | 4.18 | 4.2 | 0.002 | 0.41 | 0.0 | 0.04 | 11.01 | 0.00 | 2.196 | 4.75 | 0.00 | 3.0 | 97.0 | 0.0 | -3.43 | 0.71 | 0.62 | — | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 12.93 | 0.00 | 2.101 | 9.33 | 0.18 | 7.3 | 92.7 | 0.0 | -1.63 | 1.34 | 0.77 | 0.71 | — | 13151 | 1837 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 7BW4 | 30226 | 2023-02-18 | 2020-04-13 | 3.7 | 3.92 | — | 3.8 | 0.004 | 0.66 | 1.0 | 0.05 | 15.16 | 0.00 | 2.078 | 16.25 | 1.68 | 4.3 | 95.5 | 0.2 | -2.50 | 0.77 | 0.77 | 1.82 | 3.8 | 0.003 | 0.74 | 0.0 | 0.05 | 16.62 | 0.00 | 2.197 | 15.13 | 0.53 | 4.8 | 95.1 | 0.1 | -1.02 | 1.36 | 0.77 | 0.77 | 1.41 | 8605 | 1078 | 5 | 0 | 2 | 0 | 0 | logfile |