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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6R8B | 4754 | 2023-08-19 | 2019-04-01 | 3.1 | 3.54 | — | 3.5 | 0.012 | 1.34 | 4.0 | 0.07 | 14.76 | 0.01 | 2.211 | 7.77 | 3.12 | 4.0 | 95.7 | 0.2 | -3.32 | 0.45 | 0.56 | 3.49 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 15.87 | 0.00 | 2.077 | 7.81 | 0.57 | 4.9 | 95.1 | 0.0 | -0.56 | 1.21 | 0.64 | 0.78 | 3.48 | 26052 | 1688 | 8 | 0 | 4 | 0 | 12788 | logfile |
✔ | 7N3P | 24143 | 2023-08-11 | 2021-06-01 | 3.65 | 3.97 | — | 3.9 | 0.003 | 0.58 | 0.0 | 0.04 | 18.98 | 0.00 | 2.224 | 8.05 | 0.00 | 2.2 | 97.8 | 0.0 | 1.68 | 0.77 | 0.79 | 2.64 | 3.9 | 0.003 | 0.57 | 0.0 | 0.03 | 19.82 | 0.00 | 2.146 | 13.31 | 0.54 | 2.5 | 97.5 | 0.0 | 1.57 | 1.14 | 0.78 | 0.82 | 2.32 | 9055 | 454 | 4 | 259 | 0 | 0 | 0 | logfile |
✔ | 7RCV | 24407 | 2023-08-10 | 2021-07-08 | 2.01 | 1.78 | — | 1.9 | 0.024 | 2.38 | 0.0 | 0.11 | 20.31 | 0.01 | 1.915 | 13.94 | 1.99 | 2.6 | 97.4 | 0.0 | 0.92 | 0.78 | 0.79 | 5.10 | 1.9 | 0.007 | 0.98 | 0.0 | 0.06 | 19.24 | 0.01 | 1.984 | 13.17 | 1.79 | 3.0 | 97.0 | 0.0 | 0.41 | 0.91 | 0.81 | 0.84 | 5.30 | 54656 | 5544 | 114 | 0 | 228 | 1236 | 0 | logfile |
✔ | 7JVP | 22509 | 2023-08-10 | 2020-08-22 | 2.9 | 3.02 | — | 3.0 | 0.005 | 0.97 | 0.0 | 0.07 | 8.77 | 0.01 | 2.208 | 5.98 | 0.00 | 1.3 | 98.7 | 0.0 | 2.55 | 0.62 | 0.76 | 2.94 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 15.53 | 0.00 | 2.140 | 11.54 | 2.35 | 2.3 | 97.7 | 0.0 | 0.84 | 0.82 | 0.64 | 0.84 | 2.81 | 8486 | 1041 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7VLT | 32026 | 2023-08-11 | 2021-10-05 | 3.1 | 3.37 | 3.11 | 3.4 | 0.004 | 0.60 | 0.0 | 0.04 | 12.71 | 0.00 | 1.963 | 3.24 | 2.19 | 1.9 | 98.1 | 0.0 | 0.12 | 0.67 | 0.83 | 2.64 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 15.16 | 0.00 | 2.010 | 8.03 | 0.00 | 1.3 | 98.7 | 0.0 | 2.53 | 1.87 | 0.66 | 0.83 | 2.02 | 9024 | 1145 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 6Si8 | 10208 | 2023-08-19 | 2019-08-09 | 3.4 | 3.84 | — | 3.8 | 0.010 | 1.11 | 0.0 | 0.07 | 14.59 | 0.01 | 2.250 | 3.94 | 2.45 | 8.3 | 91.3 | 0.4 | -3.81 | 0.70 | 0.76 | 3.61 | 3.8 | 0.002 | 0.61 | 0.0 | 0.04 | 15.14 | 0.00 | 1.974 | 6.49 | 0.49 | 2.9 | 97.0 | 0.1 | -0.84 | 0.84 | 0.73 | 0.81 | 3.50 | 26542 | 1700 | 8 | 0 | 4 | 0 | 13086 | logfile |
✔ | 6JBJ | 9791 | 2023-08-11 | 2019-01-25 | 3.6 | 3.75 | — | 3.7 | 0.008 | 1.04 | 0.0 | 0.06 | 16.15 | 0.01 | 2.206 | 10.64 | 0.00 | 9.1 | 90.9 | 0.0 | -6.19 | 0.65 | 0.83 | 2.03 | 3.7 | 0.004 | 0.77 | 0.0 | 0.04 | 18.34 | 0.00 | 2.084 | 18.07 | 0.59 | 8.7 | 91.3 | 0.0 | -2.08 | 0.61 | 0.65 | 0.82 | 1.17 | 9166 | 1130 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7S8U | 24922 | 2023-08-09 | 2021-09-19 | 3.7 | 3.97 | — | 3.9 | 0.008 | 1.19 | 1.0 | 0.07 | 14.00 | 0.01 | 2.243 | 13.10 | 4.56 | 8.3 | 90.5 | 1.2 | -1.14 | 0.48 | 0.59 | 0.59 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 16.32 | 0.01 | 2.069 | 18.36 | 0.88 | 9.6 | 89.9 | 0.5 | -0.50 | 1.41 | 0.51 | 0.62 | 0.54 | 5210 | 667 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RWK | 10040 | 2023-08-17 | 2019-06-05 | 3.86 | 3.95 | 2.39 | 3.9 | 0.007 | 0.76 | 0.0 | 0.05 | 13.64 | 0.00 | 2.183 | 14.79 | 5.83 | 12.2 | 87.8 | 0.0 | -3.93 | 0.53 | 0.87 | 3.51 | 3.9 | 0.004 | 0.87 | 0.0 | 0.05 | 16.68 | 0.01 | 2.109 | 16.90 | 0.62 | 9.5 | 90.5 | 0.0 | -1.15 | 0.86 | 0.54 | 0.86 | 3.19 | 21760 | 2688 | 32 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GYX | 34379 | 2023-08-09 | 2022-09-24 | 3.7 | 3.91 | 3.72 | 3.9 | 0.007 | 1.36 | 0.0 | 0.07 | 15.99 | 0.01 | 2.208 | 6.07 | 0.30 | 0.8 | 99.2 | 0.0 | 1.06 | 0.50 | 0.76 | 2.38 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 15.90 | 0.00 | 1.447 | 11.17 | 0.60 | 2.1 | 97.9 | 0.0 | 2.78 | 1.28 | 0.53 | 0.79 | 2.23 | 6118 | 760 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7N3o | 24142 | 2023-08-10 | 2021-06-01 | 3.8 | 4.01 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 17.14 | 0.00 | 2.285 | 8.30 | 1.35 | 3.6 | 96.4 | 0.0 | 1.09 | 0.71 | 0.66 | 1.57 | 3.9 | 0.007 | 0.82 | 0.0 | 0.04 | 18.82 | 0.01 | 2.095 | 24.75 | 0.81 | 5.4 | 94.6 | 0.0 | 0.02 | 0.92 | 0.76 | 0.77 | 1.65 | 8295 | 454 | 2 | 222 | 0 | 0 | 0 | logfile |
✔ | 6o1N | 0593 | 2023-08-16 | 2019-02-21 | 2.9 | 3.21 | — | 3.8 | 0.011 | 1.37 | 12.0 | 0.07 | 11.02 | 0.01 | 1.856 | 9.13 | 1.51 | 6.4 | 93.1 | 0.5 | -6.01 | 0.60 | 0.73 | 2.17 | 3.7 | 0.003 | 0.77 | 0.0 | 0.04 | 15.75 | 0.00 | 2.178 | 7.84 | 1.46 | 6.2 | 93.8 | 0.0 | -1.53 | 0.99 | 0.58 | 0.73 | 1.67 | 19608 | 2448 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YSi | 10898 | 2023-08-21 | 2020-04-22 | 2.5 | 2.64 | 2.46 | 2.6 | 0.013 | 0.77 | 0.0 | 0.06 | 15.54 | 0.01 | 1.839 | 5.90 | 5.75 | 4.5 | 95.4 | 0.1 | -2.34 | 0.83 | 0.88 | 3.75 | 2.6 | 0.007 | 0.71 | 0.0 | 0.04 | 15.68 | 0.01 | 1.691 | 6.66 | 3.77 | 4.0 | 96.0 | 0.0 | -0.82 | 1.09 | 0.83 | 0.90 | 3.62 | 83855 | 3112 | 35 | 2800 | 166 | 0 | 0 | logfile |
✔ | 8GYW | 34378 | 2023-08-09 | 2022-09-24 | 3.9 | 3.93 | 3.77 | 4.0 | 0.008 | 1.46 | 0.0 | 0.08 | 15.18 | 0.02 | 2.008 | 6.48 | 0.30 | 0.8 | 99.2 | 0.0 | 1.24 | 0.46 | 0.73 | 1.92 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 16.46 | 0.00 | 1.170 | 13.03 | 1.21 | 1.7 | 98.3 | 0.0 | 2.64 | 1.27 | 0.50 | 0.76 | 0.83 | 6076 | 760 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6FN4 | 4282 | 2023-08-12 | 2018-02-02 | 4.14 | 4.24 | — | 4.2 | 0.005 | 0.81 | 0.0 | 0.05 | 9.97 | 0.01 | 2.096 | 8.91 | 0.00 | 7.5 | 91.3 | 1.2 | -2.94 | 0.68 | 0.75 | — | 4.2 | 0.004 | 0.70 | 0.0 | 0.04 | 12.54 | 0.00 | 2.154 | 10.55 | 0.00 | 5.2 | 94.7 | 0.1 | -0.10 | 1.65 | 0.72 | 0.77 | — | 12702 | 1626 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6R8U | 4761 | 2023-08-19 | 2019-04-02 | 3.0 | 3.51 | — | 3.4 | 0.011 | 1.28 | 4.0 | 0.08 | 15.14 | 0.01 | 2.242 | 7.03 | 3.60 | 8.6 | 91.4 | 0.0 | -3.30 | 0.51 | 0.65 | 4.68 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 16.21 | 0.00 | 2.033 | 6.62 | 1.18 | 2.4 | 97.6 | 0.0 | -1.02 | 1.26 | 0.66 | 0.81 | 4.39 | 26712 | 1700 | 8 | 0 | 4 | 0 | 13176 | logfile |
✔ | 5XSY | 6770 | 2023-08-11 | 2017-06-15 | 4.0 | 4.10 | 3.89 | 4.0 | 0.011 | 1.55 | 12.0 | 0.08 | 15.04 | 0.02 | 1.735 | 31.93 | 7.45 | 6.6 | 91.8 | 1.5 | -3.53 | 0.46 | 0.74 | — | 4.0 | 0.003 | 0.84 | 0.0 | 0.04 | 17.00 | 0.00 | 2.100 | 12.78 | 0.36 | 6.2 | 93.4 | 0.5 | -0.23 | 0.99 | 0.53 | 0.79 | — | 10634 | 1312 | 7 | 0 | 16 | 0 | 0 | logfile |
✔ | 7VX8 | 32171 | 2023-08-11 | 2021-11-12 | 2.8 | 3.10 | — | 3.1 | 0.013 | 1.23 | 4.0 | 0.06 | 14.95 | 0.01 | 1.995 | 7.41 | 1.06 | 4.9 | 95.1 | 0.0 | -3.11 | 0.68 | 0.84 | 4.23 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 17.36 | 0.00 | 2.011 | 5.14 | 1.17 | 2.7 | 97.3 | 0.0 | 0.00 | 0.43 | 0.64 | 0.83 | 3.44 | 9018 | 1120 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7VV0 | 32133 | 2023-08-09 | 2021-11-04 | 3.5 | 3.69 | — | 3.7 | 0.010 | 1.49 | 1.0 | 0.09 | 14.09 | 0.01 | 2.007 | 11.04 | 2.93 | 4.5 | 95.5 | 0.0 | -3.44 | 0.65 | 0.80 | 1.76 | 3.7 | 0.002 | 0.59 | 0.0 | 0.04 | 15.22 | 0.00 | 2.238 | 6.31 | 0.84 | 3.0 | 97.0 | 0.0 | 2.30 | 1.26 | 0.64 | 0.80 | 1.65 | 2175 | 268 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 5NGM | 3640 | 2023-08-24 | 2017-03-18 | 2.9 | 3.05 | — | 3.0 | 0.006 | 0.86 | 0.0 | 0.05 | 17.23 | 0.01 | 0.270 | 7.58 | 0.81 | 8.3 | 91.7 | 0.0 | -4.79 | 0.70 | 0.72 | 2.80 | 3.0 | 0.005 | 0.63 | 0.0 | 0.04 | 17.58 | 0.00 | 1.847 | 11.83 | 4.43 | 6.7 | 93.3 | 0.0 | -1.89 | 0.66 | 0.78 | 0.85 | 2.33 | 140965 | 5610 | 57 | 4559 | 205 | 0 | 0 | logfile |