Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XR4	33407	2023-02-19	2022-05-09	3.4	3.26	3.35	3.4	0.007	0.94	0.0	0.05	14.23	0.00	2.304	10.91	0.29	2.1	97.9	0.0	1.68	0.73	0.85	1.65	3.4	0.003	0.54	0.0	0.04	15.09	0.00	2.237	10.24	0.19	1.3	98.7	0.0	3.19	1.07	0.71	0.85	1.38	10026	1278	6	0	27	0	0	logfile
✔	6UA2	20704	2023-02-28	2019-09-10	4.2	4.44	4.05	4.4	0.017	1.74	0.0	0.08	16.71	0.01	2.191	14.11	4.10	11.3	88.7	0.1	-4.76	0.65	0.78	—	4.4	0.003	0.92	0.0	0.05	14.43	0.01	2.104	22.04	0.00	8.5	91.4	0.0	-2.75	1.68	0.64	0.76	—	31660	4016	24	0	36	0	0	logfile
✔	7VHQ	32003	2023-02-22	2021-09-22	3.27	3.68	—	3.5	0.003	0.60	0.0	0.04	13.43	0.00	2.165	9.53	0.00	3.1	96.9	0.0	1.82	0.73	0.82	1.67	3.4	0.004	0.63	0.0	0.04	15.43	0.00	2.148	10.42	0.61	4.1	95.9	0.0	1.79	0.42	0.74	0.85	1.46	16650	2076	12	0	0	0	0	logfile
✔	7DMQ	30767	2023-02-19	2020-12-05	3.06	3.15	—	3.1	0.005	0.96	0.0	0.05	13.95	0.01	2.238	3.76	0.62	9.8	90.2	0.0	-5.19	0.70	0.73	2.74	3.1	0.003	0.66	0.0	0.04	16.42	0.00	2.117	10.38	0.25	10.2	89.8	0.0	-1.79	1.43	0.77	0.79	1.91	9444	937	3	88	0	0	0	logfile
✔	6P6W	20265	2023-02-18	2019-06-04	4.0	4.40	—	4.4	0.005	1.00	0.0	0.06	15.27	0.01	2.265	5.77	0.60	7.5	92.5	0.0	-5.12	0.72	0.74	—	4.4	0.004	1.01	0.0	0.05	17.40	0.00	2.172	21.71	0.96	7.0	93.0	0.0	-0.11	0.85	0.73	0.75	—	7468	916	4	0	0	0	0	logfile
✔	6NoG	0468	2023-02-23	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.004	0.63	0.0	0.03	26.62	0.00	2.153	11.24	0.32	2.2	97.8	0.0	1.84	1.76	0.86	0.85	0.51	14929	1124	12	292	0	0	0	logfile
✔	5YYS	6859	2023-02-24	2017-12-11	4.2	4.57	—	4.1	0.016	2.26	0.0	0.10	15.30	0.01	2.201	22.76	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.005	1.30	0.0	0.06	12.76	0.01	2.047	36.43	0.00	24.1	75.3	0.6	-3.96	1.66	0.87	0.73	—	24044	3244	4	0	0	0	0	logfile
✔	7D10	30542	2023-02-17	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.003	0.64	0.0	0.04	13.88	0.00	2.238	7.52	0.34	6.4	93.6	0.0	-1.75	1.20	0.63	0.83	2.64	6424	892	4	0	4	0	0	logfile
✔	6Qi8	4552	2023-02-21	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.85	0.0	0.04	17.56	0.00	2.143	15.66	0.19	7.7	92.3	0.0	-2.16	1.53	0.32	0.22	0.51	14789	1907	12	0	6	0	0	logfile
✔	6L7A	0841	2023-02-23	2019-11-01	3.38	3.58	—	3.5	0.005	0.84	0.0	0.05	14.70	0.01	2.395	4.54	0.42	5.1	94.9	0.0	-4.67	0.75	0.84	2.76	3.5	0.003	0.61	0.0	0.04	16.32	0.00	2.225	8.97	0.09	3.6	96.4	0.0	0.31	0.62	0.73	0.84	1.73	19701	2538	18	0	0	0	0	logfile
✔	6XMX	22265	2023-02-22	2020-07-01	3.7	3.86	3.66	3.8	0.012	1.12	0.0	0.06	16.36	0.01	2.154	7.37	0.89	1.7	98.3	0.0	-1.34	0.61	0.54	1.48	3.8	0.003	0.59	0.0	0.04	17.24	0.00	1.936	14.13	0.22	2.7	97.3	0.0	1.87	1.31	0.63	0.61	0.82	16014	976	16	0	8	0	7942	logfile
✔	6VX5	21430	2023-02-20	2020-02-21	3.03	3.58	—	3.5	0.006	0.80	0.0	0.05	14.27	0.00	2.348	4.97	0.00	3.3	96.7	0.0	-6.15	0.72	0.84	2.92	3.5	0.003	0.65	0.0	0.04	16.41	0.00	2.259	9.26	0.50	1.6	98.4	0.0	-0.38	1.27	0.67	0.80	2.34	13056	1575	6	0	1	0	0	logfile
✔	6RT0	4994	2023-02-17	2019-05-22	3.1	3.18	—	3.1	0.006	0.97	0.0	0.06	14.23	0.00	2.415	2.11	1.06	11.5	88.5	0.0	-3.76	0.71	0.84	6.51	3.1	0.009	0.89	0.0	0.06	16.41	0.00	2.255	5.41	0.43	17.4	82.6	0.0	-4.13	0.82	0.72	0.86	5.76	4925	735	10	0	0	0	0	logfile
✔	5BKJ	9406	2023-02-22	2021-03-19	3.5	3.68	—	3.7	0.006	0.81	0.0	0.06	14.99	0.00	2.251	4.94	1.09	4.1	95.9	0.0	-3.93	0.69	0.84	2.13	3.7	0.002	0.52	0.0	0.05	16.34	0.00	2.242	7.50	0.33	2.0	98.0	0.0	0.25	1.63	0.69	0.83	1.97	16939	2156	16	0	7	4	0	logfile
✔	7W0B	32237	2023-02-20	2021-11-18	3.33	3.61	—	3.5	0.003	0.60	0.0	0.04	14.32	0.00	2.049	11.71	0.00	5.0	94.9	0.1	0.14	0.84	0.79	1.45	3.5	0.003	0.63	0.0	0.04	16.03	0.00	2.154	12.02	0.14	4.4	95.5	0.1	0.34	0.46	0.84	0.79	1.67	12997	1602	2	0	0	0	0	logfile
✔	6HUJ	0279	2023-02-21	2018-10-08	3.04	3.16	3.04	3.1	0.005	0.86	0.0	0.06	8.71	0.01	2.265	4.61	0.00	4.0	96.0	0.0	-4.37	0.76	0.83	4.82	3.1	0.005	0.60	0.0	0.04	13.75	0.00	2.161	7.75	0.31	3.5	96.5	0.0	-0.11	0.65	0.76	0.87	4.18	15255	1812	15	0	35	0	0	logfile
✔	7L49	23158	2023-02-20	2020-12-18	3.1	3.16	—	3.1	0.005	0.95	0.0	0.06	18.53	0.01	2.220	6.19	0.00	8.6	91.4	0.0	-3.90	0.74	0.76	2.18	3.2	0.003	0.55	0.0	0.04	18.60	0.00	2.164	12.59	0.22	7.3	92.7	0.0	-0.56	1.17	0.76	0.82	2.70	12414	1041	8	191	4	0	0	logfile
✔	8AUR	15673	2023-02-17	2022-08-25	3.47	3.44	3.63	3.6	0.002	0.54	0.0	0.04	13.41	0.00	2.350	6.62	0.00	5.6	94.4	0.0	-1.30	0.72	0.82	2.41	3.5	0.004	0.66	0.0	0.04	16.10	0.00	2.233	7.09	0.00	9.4	90.5	0.1	-1.38	1.66	0.71	0.83	2.56	5409	699	3	0	0	0	0	logfile
✔	6W18	21503	2023-02-20	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.003	0.71	0.0	0.04	12.93	0.00	2.101	9.33	0.18	7.3	92.7	0.0	-1.63	1.34	0.77	0.71	—	13151	1837	9	0	3	0	0	logfile
✔	7BW4	30226	2023-02-18	2020-04-13	3.7	3.92	—	3.8	0.004	0.66	1.0	0.05	15.16	0.00	2.078	16.25	1.68	4.3	95.5	0.2	-2.50	0.77	0.77	1.82	3.8	0.003	0.74	0.0	0.05	16.62	0.00	2.197	15.13	0.53	4.8	95.1	0.1	-1.02	1.36	0.77	0.77	1.41	8605	1078	5	0	2	0	0	logfile

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