Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6R8B	4754	2023-08-19	2019-04-01	3.1	3.54	—	3.5	0.012	1.34	4.0	0.07	14.76	0.01	2.211	7.77	3.12	4.0	95.7	0.2	-3.32	0.45	0.56	3.49	3.5	0.003	0.56	0.0	0.04	15.87	0.00	2.077	7.81	0.57	4.9	95.1	0.0	-0.56	1.21	0.64	0.78	3.48	26052	1688	8	0	4	0	12788	logfile
✔	7N3P	24143	2023-08-11	2021-06-01	3.65	3.97	—	3.9	0.003	0.58	0.0	0.04	18.98	0.00	2.224	8.05	0.00	2.2	97.8	0.0	1.68	0.77	0.79	2.64	3.9	0.003	0.57	0.0	0.03	19.82	0.00	2.146	13.31	0.54	2.5	97.5	0.0	1.57	1.14	0.78	0.82	2.32	9055	454	4	259	0	0	0	logfile
✔	7RCV	24407	2023-08-10	2021-07-08	2.01	1.78	—	1.9	0.024	2.38	0.0	0.11	20.31	0.01	1.915	13.94	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.007	0.98	0.0	0.06	19.24	0.01	1.984	13.17	1.79	3.0	97.0	0.0	0.41	0.91	0.81	0.84	5.30	54656	5544	114	0	228	1236	0	logfile
✔	7JVP	22509	2023-08-10	2020-08-22	2.9	3.02	—	3.0	0.005	0.97	0.0	0.07	8.77	0.01	2.208	5.98	0.00	1.3	98.7	0.0	2.55	0.62	0.76	2.94	3.0	0.003	0.57	0.0	0.04	15.53	0.00	2.140	11.54	2.35	2.3	97.7	0.0	0.84	0.82	0.64	0.84	2.81	8486	1041	6	0	12	0	0	logfile
✔	7VLT	32026	2023-08-11	2021-10-05	3.1	3.37	3.11	3.4	0.004	0.60	0.0	0.04	12.71	0.00	1.963	3.24	2.19	1.9	98.1	0.0	0.12	0.67	0.83	2.64	3.4	0.003	0.55	0.0	0.04	15.16	0.00	2.010	8.03	0.00	1.3	98.7	0.0	2.53	1.87	0.66	0.83	2.02	9024	1145	1	0	6	0	0	logfile
✔	6Si8	10208	2023-08-19	2019-08-09	3.4	3.84	—	3.8	0.010	1.11	0.0	0.07	14.59	0.01	2.250	3.94	2.45	8.3	91.3	0.4	-3.81	0.70	0.76	3.61	3.8	0.002	0.61	0.0	0.04	15.14	0.00	1.974	6.49	0.49	2.9	97.0	0.1	-0.84	0.84	0.73	0.81	3.50	26542	1700	8	0	4	0	13086	logfile
✔	6JBJ	9791	2023-08-11	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.15	0.01	2.206	10.64	0.00	9.1	90.9	0.0	-6.19	0.65	0.83	2.03	3.7	0.004	0.77	0.0	0.04	18.34	0.00	2.084	18.07	0.59	8.7	91.3	0.0	-2.08	0.61	0.65	0.82	1.17	9166	1130	4	0	2	0	0	logfile
✔	7S8U	24922	2023-08-09	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.10	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.004	0.86	0.0	0.05	16.32	0.01	2.069	18.36	0.88	9.6	89.9	0.5	-0.50	1.41	0.51	0.62	0.54	5210	667	1	0	0	0	0	logfile
✔	6RWK	10040	2023-08-17	2019-06-05	3.86	3.95	2.39	3.9	0.007	0.76	0.0	0.05	13.64	0.00	2.183	14.79	5.83	12.2	87.8	0.0	-3.93	0.53	0.87	3.51	3.9	0.004	0.87	0.0	0.05	16.68	0.01	2.109	16.90	0.62	9.5	90.5	0.0	-1.15	0.86	0.54	0.86	3.19	21760	2688	32	0	0	0	0	logfile
✔	8GYX	34379	2023-08-09	2022-09-24	3.7	3.91	3.72	3.9	0.007	1.36	0.0	0.07	15.99	0.01	2.208	6.07	0.30	0.8	99.2	0.0	1.06	0.50	0.76	2.38	3.9	0.004	0.67	0.0	0.04	15.90	0.00	1.447	11.17	0.60	2.1	97.9	0.0	2.78	1.28	0.53	0.79	2.23	6118	760	4	0	6	0	0	logfile
✔	7N3o	24142	2023-08-10	2021-06-01	3.8	4.01	—	3.9	0.003	0.59	0.0	0.04	17.14	0.00	2.285	8.30	1.35	3.6	96.4	0.0	1.09	0.71	0.66	1.57	3.9	0.007	0.82	0.0	0.04	18.82	0.01	2.095	24.75	0.81	5.4	94.6	0.0	0.02	0.92	0.76	0.77	1.65	8295	454	2	222	0	0	0	logfile
✔	6o1N	0593	2023-08-16	2019-02-21	2.9	3.21	—	3.8	0.011	1.37	12.0	0.07	11.02	0.01	1.856	9.13	1.51	6.4	93.1	0.5	-6.01	0.60	0.73	2.17	3.7	0.003	0.77	0.0	0.04	15.75	0.00	2.178	7.84	1.46	6.2	93.8	0.0	-1.53	0.99	0.58	0.73	1.67	19608	2448	4	0	0	0	0	logfile
✔	6YSi	10898	2023-08-21	2020-04-22	2.5	2.64	2.46	2.6	0.013	0.77	0.0	0.06	15.54	0.01	1.839	5.90	5.75	4.5	95.4	0.1	-2.34	0.83	0.88	3.75	2.6	0.007	0.71	0.0	0.04	15.68	0.01	1.691	6.66	3.77	4.0	96.0	0.0	-0.82	1.09	0.83	0.90	3.62	83855	3112	35	2800	166	0	0	logfile
✔	8GYW	34378	2023-08-09	2022-09-24	3.9	3.93	3.77	4.0	0.008	1.46	0.0	0.08	15.18	0.02	2.008	6.48	0.30	0.8	99.2	0.0	1.24	0.46	0.73	1.92	3.9	0.003	0.67	0.0	0.04	16.46	0.00	1.170	13.03	1.21	1.7	98.3	0.0	2.64	1.27	0.50	0.76	0.83	6076	760	4	0	6	0	0	logfile
✔	6FN4	4282	2023-08-12	2018-02-02	4.14	4.24	—	4.2	0.005	0.81	0.0	0.05	9.97	0.01	2.096	8.91	0.00	7.5	91.3	1.2	-2.94	0.68	0.75	—	4.2	0.004	0.70	0.0	0.04	12.54	0.00	2.154	10.55	0.00	5.2	94.7	0.1	-0.10	1.65	0.72	0.77	—	12702	1626	4	0	4	0	0	logfile
✔	6R8U	4761	2023-08-19	2019-04-02	3.0	3.51	—	3.4	0.011	1.28	4.0	0.08	15.14	0.01	2.242	7.03	3.60	8.6	91.4	0.0	-3.30	0.51	0.65	4.68	3.4	0.003	0.61	0.0	0.04	16.21	0.00	2.033	6.62	1.18	2.4	97.6	0.0	-1.02	1.26	0.66	0.81	4.39	26712	1700	8	0	4	0	13176	logfile
✔	5XSY	6770	2023-08-11	2017-06-15	4.0	4.10	3.89	4.0	0.011	1.55	12.0	0.08	15.04	0.02	1.735	31.93	7.45	6.6	91.8	1.5	-3.53	0.46	0.74	—	4.0	0.003	0.84	0.0	0.04	17.00	0.00	2.100	12.78	0.36	6.2	93.4	0.5	-0.23	0.99	0.53	0.79	—	10634	1312	7	0	16	0	0	logfile
✔	7VX8	32171	2023-08-11	2021-11-12	2.8	3.10	—	3.1	0.013	1.23	4.0	0.06	14.95	0.01	1.995	7.41	1.06	4.9	95.1	0.0	-3.11	0.68	0.84	4.23	3.1	0.003	0.60	0.0	0.04	17.36	0.00	2.011	5.14	1.17	2.7	97.3	0.0	0.00	0.43	0.64	0.83	3.44	9018	1120	4	0	4	0	0	logfile
✔	7VV0	32133	2023-08-09	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.09	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.002	0.59	0.0	0.04	15.22	0.00	2.238	6.31	0.84	3.0	97.0	0.0	2.30	1.26	0.64	0.80	1.65	2175	268	2	0	1	0	0	logfile
✔	5NGM	3640	2023-08-24	2017-03-18	2.9	3.05	—	3.0	0.006	0.86	0.0	0.05	17.23	0.01	0.270	7.58	0.81	8.3	91.7	0.0	-4.79	0.70	0.72	2.80	3.0	0.005	0.63	0.0	0.04	17.58	0.00	1.847	11.83	4.43	6.7	93.3	0.0	-1.89	0.66	0.78	0.85	2.33	140965	5610	57	4559	205	0	0	logfile

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