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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NMC | 0446 | 2023-04-22 | 2019-01-10 | 4.24 | 4.55 | — | 4.2 | 0.014 | 1.16 | 6.0 | 0.07 | 16.40 | 0.01 | 2.015 | 20.07 | 2.45 | 10.2 | 89.4 | 0.4 | -4.23 | 0.86 | 0.76 | — | 4.2 | 0.005 | 0.77 | 0.0 | 0.04 | 14.53 | 0.00 | 1.850 | 22.51 | 0.07 | 8.7 | 91.3 | 0.0 | -1.07 | 1.84 | 0.89 | 0.85 | — | 12808 | 1480 | 8 | 25 | 2 | 6 | 0 | logfile |
✔ | 7MiJ | 23853 | 2023-04-26 | 2021-04-17 | 1.98 | 1.95 | — | 2.0 | 0.010 | 1.38 | 4.0 | 0.05 | 19.92 | 0.01 | 2.320 | 3.08 | 0.18 | 2.8 | 97.2 | 0.0 | -3.96 | 0.75 | 0.81 | 5.48 | 2.0 | 0.002 | 0.51 | 0.0 | 0.04 | 18.05 | 0.00 | 2.213 | 4.43 | 0.92 | 2.6 | 97.4 | 0.0 | 1.38 | 1.08 | 0.75 | 0.80 | 4.57 | 23010 | 2556 | 12 | 0 | 38 | 328 | 0 | logfile |
✔ | 7BSU | 30167 | 2023-04-21 | 2020-03-31 | 3.2 | 3.35 | — | 3.3 | 0.006 | 0.60 | 0.0 | 0.04 | 17.87 | 0.01 | 1.626 | 31.07 | 7.59 | 7.6 | 92.4 | 0.0 | -6.52 | 0.59 | 0.85 | 3.64 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 16.94 | 0.00 | 2.009 | 8.46 | 0.39 | 4.4 | 95.6 | 0.0 | -1.79 | 0.95 | 0.64 | 0.89 | 3.52 | 9325 | 1138 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 6HiZ | 0233 | 2023-04-28 | 2018-08-31 | 3.08 | 3.20 | 3.05 | 3.1 | 0.009 | 1.39 | 0.0 | 0.06 | 18.08 | 0.01 | 1.866 | 11.16 | 12.80 | 3.2 | 96.7 | 0.1 | -2.90 | 0.89 | 0.91 | 2.63 | 3.1 | 0.002 | 0.58 | 0.0 | 0.04 | 16.93 | 0.00 | 1.989 | 8.25 | 0.16 | 3.3 | 96.7 | 0.0 | 1.26 | 0.78 | 0.87 | 0.89 | 2.62 | 76845 | 9056 | 33 | 143 | 19 | 3 | 0 | logfile |
✔ | 6SUE | 10312 | 2023-04-20 | 2019-09-13 | 3.4 | 3.48 | 3.43 | 3.3 | 0.021 | 1.72 | 5.0 | 0.10 | 10.89 | 0.01 | 2.214 | 1.22 | 0.01 | 2.1 | 97.7 | 0.3 | 0.31 | 0.86 | 0.81 | 2.68 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 14.76 | 0.00 | 2.069 | 11.07 | 0.24 | 3.6 | 96.4 | 0.1 | 0.81 | 1.39 | 0.87 | 0.84 | 2.24 | 108270 | 13628 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P92 | 13258 | 2023-04-21 | 2021-07-23 | 2.7 | 2.17 | 2.57 | 2.3 | 0.003 | 0.56 | 1.0 | 0.04 | 14.12 | 0.00 | 1.985 | 4.69 | 0.18 | 3.7 | 96.3 | 0.0 | 0.23 | 0.52 | 0.78 | 3.78 | 2.4 | 0.002 | 0.52 | 0.0 | 0.04 | 17.07 | 0.00 | 2.196 | 5.77 | 1.20 | 2.7 | 97.3 | 0.0 | 0.75 | 1.88 | 0.51 | 0.78 | 3.47 | 10436 | 1322 | 9 | 0 | 12 | 157 | 0 | logfile |
✔ | 6GAZ | 4369 | 2023-04-27 | 2018-04-13 | 3.1 | 3.24 | 3.10 | 3.2 | 0.008 | 1.21 | 0.0 | 0.05 | 17.12 | 0.01 | 1.895 | 11.50 | 9.58 | 3.6 | 96.3 | 0.1 | -3.26 | 0.84 | 0.89 | 2.20 | 3.2 | 0.004 | 0.66 | 0.0 | 0.04 | 16.90 | 0.00 | 1.884 | 11.95 | 0.30 | 4.1 | 95.9 | 0.1 | 0.56 | 2.89 | 0.83 | 0.88 | 2.05 | 73172 | 6270 | 48 | 1048 | 152 | 5 | 0 | logfile |
✔ | 7F8N | 31490 | 2023-04-24 | 2021-07-02 | 3.4 | 3.52 | 3.33 | 3.5 | 0.012 | 1.08 | 0.0 | 0.04 | 16.48 | 0.01 | 2.219 | 10.34 | 2.55 | 4.7 | 95.3 | 0.0 | -0.91 | 0.62 | 0.81 | 2.45 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 14.77 | 0.00 | 2.171 | 12.84 | 0.16 | 4.2 | 95.8 | 0.0 | -0.12 | 0.45 | 0.60 | 0.84 | 1.98 | 18522 | 2163 | 14 | 0 | 49 | 0 | 0 | logfile |
✔ | 7SYF | 25524 | 2023-04-22 | 2021-11-24 | 4.2 | 3.03 | 3.92 | 2.2 | 0.013 | 1.86 | 8.0 | 0.10 | 14.32 | 0.01 | 2.460 | 1.62 | 1.31 | 3.9 | 96.1 | 0.0 | -1.56 | 0.67 | 0.61 | — | 2.2 | 0.003 | 0.78 | 0.0 | 0.04 | 13.94 | 0.00 | 1.993 | 16.84 | 0.08 | 3.1 | 96.9 | 0.0 | 0.80 | 1.17 | 0.68 | 0.63 | — | 11108 | 1391 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NKQ | 12446 | 2023-04-21 | 2021-02-18 | 2.98 | 3.25 | — | 3.1 | 0.004 | 0.49 | 0.0 | 0.04 | 13.52 | 0.00 | 2.018 | 7.16 | 0.00 | 2.7 | 97.3 | 0.0 | 1.39 | 0.81 | 0.81 | 2.98 | 3.1 | 0.003 | 0.48 | 0.0 | 0.04 | 15.71 | 0.00 | 2.008 | 6.87 | 1.05 | 2.3 | 97.7 | 0.0 | 2.27 | 0.33 | 0.82 | 0.84 | 2.51 | 10621 | 714 | 8 | 0 | 0 | 0 | 5312 | logfile |
✔ | 6YE4 | 10789 | 2023-04-21 | 2020-03-24 | 3.2 | 3.33 | 3.07 | 3.3 | 0.026 | 1.69 | 0.0 | 0.10 | 14.61 | 0.01 | 2.373 | 3.02 | 0.00 | 0.9 | 99.1 | 0.0 | -3.36 | 0.73 | 0.88 | 2.50 | 3.3 | 0.003 | 0.49 | 0.0 | 0.03 | 16.29 | 0.00 | 2.376 | 4.96 | 0.00 | 2.4 | 97.6 | 0.0 | 3.87 | 0.94 | 0.65 | 0.85 | 1.22 | 9140 | 1180 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 7X92 | 33064 | 2023-04-20 | 2022-03-15 | 4.1 | 5.14 | 4.05 | 4.5 | 0.005 | 0.74 | 1.0 | 0.06 | 14.75 | 0.01 | 2.106 | 12.50 | 0.27 | 14.5 | 85.5 | 0.0 | -2.53 | 0.77 | 0.69 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.05 | 13.28 | 0.00 | 1.994 | 19.37 | 0.00 | 14.3 | 85.2 | 0.5 | -2.95 | 1.21 | 0.78 | 0.76 | — | 6529 | 426 | 4 | 0 | 2 | 0 | 3171 | logfile |
✔ | 7ZDi | 14650 | 2023-04-21 | 2022-03-29 | 2.9 | 3.06 | 2.82 | 3.1 | 0.013 | 2.74 | 0.0 | 0.04 | 16.49 | 0.01 | 2.378 | 3.63 | 0.00 | 0.9 | 99.1 | 0.0 | 1.10 | 0.64 | 0.84 | 5.30 | 3.1 | 0.005 | 1.48 | 0.0 | 0.04 | 16.61 | 0.00 | 2.159 | 5.01 | 0.37 | 1.0 | 99.0 | 0.0 | 3.01 | 0.30 | 0.69 | 0.87 | 4.42 | 10284 | 976 | 38 | 0 | 42 | 0 | 0 | logfile |
✔ | 6o72 | 0638 | 2023-04-28 | 2019-03-07 | 3.0 | 3.18 | — | 3.2 | 0.009 | 1.20 | 0.0 | 0.06 | 15.63 | 0.01 | 2.062 | 8.40 | 0.00 | 7.4 | 92.6 | 0.0 | -6.25 | 0.63 | 0.80 | 2.52 | 3.2 | 0.004 | 0.78 | 0.0 | 0.04 | 17.76 | 0.00 | 2.173 | 13.34 | 2.18 | 6.9 | 93.1 | 0.0 | -0.08 | 0.76 | 0.63 | 0.81 | 2.09 | 28592 | 3432 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7MCA | 23755 | 2023-04-27 | 2021-04-01 | 3.6 | 3.75 | 3.58 | 3.8 | 0.007 | 0.98 | 0.0 | 0.06 | 19.21 | 0.01 | 1.053 | 8.11 | 0.75 | 8.2 | 91.7 | 0.1 | -5.13 | 0.77 | 0.79 | 2.32 | 3.7 | 0.005 | 0.70 | 0.0 | 0.04 | 20.09 | 0.00 | 1.910 | 11.17 | 0.71 | 9.2 | 90.8 | 0.0 | -2.25 | 1.98 | 0.77 | 0.81 | 2.15 | 24692 | 2760 | 13 | 100 | 8 | 0 | 0 | logfile |
✔ | 7NJ0 | 12368 | 2023-04-23 | 2021-02-14 | 3.6 | 3.25 | — | 3.6 | 0.005 | 0.66 | 0.0 | 0.04 | 13.21 | 0.00 | 2.196 | 6.69 | 0.00 | 8.9 | 91.1 | 0.0 | -2.82 | 0.74 | 0.83 | 2.02 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.94 | 0.00 | 2.097 | 7.55 | 0.32 | 4.8 | 95.1 | 0.1 | 0.62 | 0.65 | 0.76 | 0.82 | 1.20 | 14330 | 1818 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6C0W | 7326 | 2023-04-22 | 2018-01-02 | 4.0 | 4.10 | 3.87 | 4.0 | 0.006 | 0.81 | 0.0 | 0.05 | 27.80 | 0.01 | 2.107 | 4.25 | 0.00 | 4.9 | 95.1 | 0.0 | -4.19 | 0.80 | 0.83 | — | 4.0 | 0.005 | 0.71 | 0.0 | 0.04 | 28.54 | 0.00 | 1.993 | 13.39 | 1.40 | 4.5 | 95.5 | 0.0 | 0.60 | 1.28 | 0.80 | 0.84 | — | 13122 | 925 | 11 | 278 | 0 | 0 | 0 | logfile |
✔ | 7F5V | 31468 | 2023-04-25 | 2021-06-22 | 3.6 | 4.00 | 3.42 | 3.9 | 0.005 | 0.69 | 0.0 | 0.04 | 13.93 | 0.00 | 2.076 | 16.85 | 0.18 | 6.9 | 93.0 | 0.1 | -4.69 | 0.75 | 0.80 | 1.04 | 3.9 | 0.005 | 0.72 | 0.0 | 0.04 | 15.92 | 0.00 | 2.060 | 17.19 | 0.27 | 7.0 | 93.0 | 0.0 | -1.42 | 1.22 | 0.74 | 0.79 | 0.49 | 20912 | 2760 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KGD | 22866 | 2023-04-26 | 2020-10-16 | 3.64 | 3.23 | — | 3.3 | 0.006 | 1.01 | 12.0 | 0.07 | 14.68 | 0.01 | 1.997 | 9.86 | 1.44 | 2.1 | 97.9 | 0.0 | 0.77 | 0.57 | 0.71 | 1.02 | 3.3 | 0.003 | 0.69 | 0.0 | 0.04 | 16.25 | 0.00 | 2.178 | 10.79 | 0.27 | 2.0 | 98.0 | 0.0 | 1.02 | 0.53 | 0.58 | 0.72 | 0.97 | 23580 | 3060 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6YTF | 10915 | 2023-04-24 | 2020-04-24 | 3.0 | 3.05 | 2.90 | 3.0 | 0.010 | 0.92 | 0.0 | 0.05 | 18.00 | 0.01 | 1.898 | 15.26 | 11.09 | 8.7 | 91.0 | 0.2 | -4.10 | 0.71 | 0.71 | 1.43 | 3.0 | 0.005 | 0.78 | 0.0 | 0.04 | 17.16 | 0.01 | 1.845 | 14.09 | 7.45 | 7.8 | 92.0 | 0.2 | -0.95 | 1.18 | 0.73 | 0.74 | 1.32 | 16906 | 852 | 12 | 477 | 25 | 0 | 0 | logfile |