Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NMC	0446	2023-04-22	2019-01-10	4.24	4.55	—	4.2	0.014	1.16	6.0	0.07	16.40	0.01	2.015	20.07	2.45	10.2	89.4	0.4	-4.23	0.86	0.76	—	4.2	0.005	0.77	0.0	0.04	14.53	0.00	1.850	22.51	0.07	8.7	91.3	0.0	-1.07	1.84	0.89	0.85	—	12808	1480	8	25	2	6	0	logfile
✔	7MiJ	23853	2023-04-26	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	19.92	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.002	0.51	0.0	0.04	18.05	0.00	2.213	4.43	0.92	2.6	97.4	0.0	1.38	1.08	0.75	0.80	4.57	23010	2556	12	0	38	328	0	logfile
✔	7BSU	30167	2023-04-21	2020-03-31	3.2	3.35	—	3.3	0.006	0.60	0.0	0.04	17.87	0.01	1.626	31.07	7.59	7.6	92.4	0.0	-6.52	0.59	0.85	3.64	3.3	0.003	0.68	0.0	0.04	16.94	0.00	2.009	8.46	0.39	4.4	95.6	0.0	-1.79	0.95	0.64	0.89	3.52	9325	1138	4	0	7	0	0	logfile
✔	6HiZ	0233	2023-04-28	2018-08-31	3.08	3.20	3.05	3.1	0.009	1.39	0.0	0.06	18.08	0.01	1.866	11.16	12.80	3.2	96.7	0.1	-2.90	0.89	0.91	2.63	3.1	0.002	0.58	0.0	0.04	16.93	0.00	1.989	8.25	0.16	3.3	96.7	0.0	1.26	0.78	0.87	0.89	2.62	76845	9056	33	143	19	3	0	logfile
✔	6SUE	10312	2023-04-20	2019-09-13	3.4	3.48	3.43	3.3	0.021	1.72	5.0	0.10	10.89	0.01	2.214	1.22	0.01	2.1	97.7	0.3	0.31	0.86	0.81	2.68	3.3	0.003	0.64	0.0	0.04	14.76	0.00	2.069	11.07	0.24	3.6	96.4	0.1	0.81	1.39	0.87	0.84	2.24	108270	13628	6	0	0	0	0	logfile
✔	7P92	13258	2023-04-21	2021-07-23	2.7	2.17	2.57	2.3	0.003	0.56	1.0	0.04	14.12	0.00	1.985	4.69	0.18	3.7	96.3	0.0	0.23	0.52	0.78	3.78	2.4	0.002	0.52	0.0	0.04	17.07	0.00	2.196	5.77	1.20	2.7	97.3	0.0	0.75	1.88	0.51	0.78	3.47	10436	1322	9	0	12	157	0	logfile
✔	6GAZ	4369	2023-04-27	2018-04-13	3.1	3.24	3.10	3.2	0.008	1.21	0.0	0.05	17.12	0.01	1.895	11.50	9.58	3.6	96.3	0.1	-3.26	0.84	0.89	2.20	3.2	0.004	0.66	0.0	0.04	16.90	0.00	1.884	11.95	0.30	4.1	95.9	0.1	0.56	2.89	0.83	0.88	2.05	73172	6270	48	1048	152	5	0	logfile
✔	7F8N	31490	2023-04-24	2021-07-02	3.4	3.52	3.33	3.5	0.012	1.08	0.0	0.04	16.48	0.01	2.219	10.34	2.55	4.7	95.3	0.0	-0.91	0.62	0.81	2.45	3.5	0.003	0.57	0.0	0.04	14.77	0.00	2.171	12.84	0.16	4.2	95.8	0.0	-0.12	0.45	0.60	0.84	1.98	18522	2163	14	0	49	0	0	logfile
✔	7SYF	25524	2023-04-22	2021-11-24	4.2	3.03	3.92	2.2	0.013	1.86	8.0	0.10	14.32	0.01	2.460	1.62	1.31	3.9	96.1	0.0	-1.56	0.67	0.61	—	2.2	0.003	0.78	0.0	0.04	13.94	0.00	1.993	16.84	0.08	3.1	96.9	0.0	0.80	1.17	0.68	0.63	—	11108	1391	1	0	0	0	0	logfile
✔	7NKQ	12446	2023-04-21	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.003	0.48	0.0	0.04	15.71	0.00	2.008	6.87	1.05	2.3	97.7	0.0	2.27	0.33	0.82	0.84	2.51	10621	714	8	0	0	0	5312	logfile
✔	6YE4	10789	2023-04-21	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.49	0.0	0.03	16.29	0.00	2.376	4.96	0.00	2.4	97.6	0.0	3.87	0.94	0.65	0.85	1.22	9140	1180	10	0	5	0	0	logfile
✔	7X92	33064	2023-04-20	2022-03-15	4.1	5.14	4.05	4.5	0.005	0.74	1.0	0.06	14.75	0.01	2.106	12.50	0.27	14.5	85.5	0.0	-2.53	0.77	0.69	—	4.5	0.003	0.66	0.0	0.05	13.28	0.00	1.994	19.37	0.00	14.3	85.2	0.5	-2.95	1.21	0.78	0.76	—	6529	426	4	0	2	0	3171	logfile
✔	7ZDi	14650	2023-04-21	2022-03-29	2.9	3.06	2.82	3.1	0.013	2.74	0.0	0.04	16.49	0.01	2.378	3.63	0.00	0.9	99.1	0.0	1.10	0.64	0.84	5.30	3.1	0.005	1.48	0.0	0.04	16.61	0.00	2.159	5.01	0.37	1.0	99.0	0.0	3.01	0.30	0.69	0.87	4.42	10284	976	38	0	42	0	0	logfile
✔	6o72	0638	2023-04-28	2019-03-07	3.0	3.18	—	3.2	0.009	1.20	0.0	0.06	15.63	0.01	2.062	8.40	0.00	7.4	92.6	0.0	-6.25	0.63	0.80	2.52	3.2	0.004	0.78	0.0	0.04	17.76	0.00	2.173	13.34	2.18	6.9	93.1	0.0	-0.08	0.76	0.63	0.81	2.09	28592	3432	8	0	28	0	0	logfile
✔	7MCA	23755	2023-04-27	2021-04-01	3.6	3.75	3.58	3.8	0.007	0.98	0.0	0.06	19.21	0.01	1.053	8.11	0.75	8.2	91.7	0.1	-5.13	0.77	0.79	2.32	3.7	0.005	0.70	0.0	0.04	20.09	0.00	1.910	11.17	0.71	9.2	90.8	0.0	-2.25	1.98	0.77	0.81	2.15	24692	2760	13	100	8	0	0	logfile
✔	7NJ0	12368	2023-04-23	2021-02-14	3.6	3.25	—	3.6	0.005	0.66	0.0	0.04	13.21	0.00	2.196	6.69	0.00	8.9	91.1	0.0	-2.82	0.74	0.83	2.02	3.6	0.003	0.61	0.0	0.04	15.94	0.00	2.097	7.55	0.32	4.8	95.1	0.1	0.62	0.65	0.76	0.82	1.20	14330	1818	4	0	1	0	0	logfile
✔	6C0W	7326	2023-04-22	2018-01-02	4.0	4.10	3.87	4.0	0.006	0.81	0.0	0.05	27.80	0.01	2.107	4.25	0.00	4.9	95.1	0.0	-4.19	0.80	0.83	—	4.0	0.005	0.71	0.0	0.04	28.54	0.00	1.993	13.39	1.40	4.5	95.5	0.0	0.60	1.28	0.80	0.84	—	13122	925	11	278	0	0	0	logfile
✔	7F5V	31468	2023-04-25	2021-06-22	3.6	4.00	3.42	3.9	0.005	0.69	0.0	0.04	13.93	0.00	2.076	16.85	0.18	6.9	93.0	0.1	-4.69	0.75	0.80	1.04	3.9	0.005	0.72	0.0	0.04	15.92	0.00	2.060	17.19	0.27	7.0	93.0	0.0	-1.42	1.22	0.74	0.79	0.49	20912	2760	4	0	0	0	0	logfile
✔	7KGD	22866	2023-04-26	2020-10-16	3.64	3.23	—	3.3	0.006	1.01	12.0	0.07	14.68	0.01	1.997	9.86	1.44	2.1	97.9	0.0	0.77	0.57	0.71	1.02	3.3	0.003	0.69	0.0	0.04	16.25	0.00	2.178	10.79	0.27	2.0	98.0	0.0	1.02	0.53	0.58	0.72	0.97	23580	3060	6	0	6	0	0	logfile
✔	6YTF	10915	2023-04-24	2020-04-24	3.0	3.05	2.90	3.0	0.010	0.92	0.0	0.05	18.00	0.01	1.898	15.26	11.09	8.7	91.0	0.2	-4.10	0.71	0.71	1.43	3.0	0.005	0.78	0.0	0.04	17.16	0.01	1.845	14.09	7.45	7.8	92.0	0.2	-0.95	1.18	0.73	0.74	1.32	16906	852	12	477	25	0	0	logfile

• ← previous
• Page 4 of 372
• next →