Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NJW	12425	2022-07-04	2021-02-17	3.67	3.61	—	3.8	0.003	0.50	0.0	0.04	14.13	0.00	2.178	7.79	0.00	3.2	96.8	0.0	2.21	0.62	0.82	1.69	3.8	0.004	0.53	0.0	0.04	15.38	0.00	2.160	8.04	0.00	2.3	97.7	0.0	4.21	0.40	0.62	0.82	1.89	16426	1118	12	0	0	0	8337	logfile
✔	7oZo	13130	2022-07-03	2021-06-28	3.8	4.06	3.82	3.9	0.002	0.39	0.0	0.04	14.07	0.00	1.993	4.68	0.00	2.1	97.9	0.0	1.21	0.79	0.71	0.70	3.9	0.004	0.73	0.0	0.05	16.76	0.01	2.113	15.84	0.38	3.6	96.4	0.0	-0.09	1.26	0.82	0.78	0.89	54330	6774	32	0	10	0	0	logfile
✔	7NKB	12436	2022-07-04	2021-02-17	2.9	3.02	—	2.9	0.004	0.50	0.0	0.04	13.12	0.00	2.057	6.86	0.00	2.0	98.0	0.0	1.81	0.73	0.86	2.90	2.9	0.005	0.56	0.0	0.04	15.09	0.00	2.082	7.22	1.38	1.5	98.5	0.0	3.47	0.37	0.74	0.88	2.79	16769	1150	12	0	0	0	8429	logfile
✔	7NJV	12424	2022-07-04	2021-02-17	2.9	2.81	—	2.9	0.003	0.60	0.0	0.04	13.24	0.00	2.179	6.55	0.00	2.5	97.5	0.0	2.26	0.65	0.88	2.67	2.9	0.004	0.49	0.0	0.04	15.43	0.00	2.132	5.27	0.91	2.0	98.0	0.0	2.71	0.30	0.65	0.90	2.63	16463	1118	13	0	1	0	8337	logfile
✔	7NJY	12427	2022-07-04	2021-02-17	2.94	2.86	—	2.9	0.003	0.47	0.0	0.04	13.38	0.00	2.202	4.99	0.00	2.8	97.2	0.0	2.11	0.64	0.87	2.98	3.0	0.003	0.52	0.0	0.04	15.65	0.00	2.100	5.17	0.78	1.7	98.3	0.0	4.22	0.43	0.64	0.89	2.40	16426	1118	12	0	0	0	8337	logfile
✔	7NJT	12422	2022-07-04	2021-02-17	2.75	2.94	—	2.8	0.003	0.48	0.0	0.04	13.47	0.00	2.239	6.01	0.00	2.7	97.3	0.0	2.22	0.66	0.87	2.39	2.8	0.003	0.53	0.0	0.04	15.43	0.00	2.176	5.83	0.39	1.5	98.5	0.0	3.89	0.40	0.67	0.89	1.73	16475	1122	12	0	0	0	8352	logfile
✔	7EKQ	31173	2022-07-05	2021-04-06	3.6	3.09	—	3.0	0.003	0.71	0.0	0.05	13.22	0.01	2.280	4.25	0.14	3.4	96.6	0.0	-5.02	0.68	0.65	0.71	3.0	0.014	1.13	0.0	0.05	16.93	0.01	1.504	20.08	0.51	4.7	95.3	0.0	-1.26	2.14	0.72	0.73	0.81	27663	3583	19	0	0	0	0	logfile
✔	7NL9	12461	2022-07-04	2021-02-22	2.86	2.98	—	3.0	0.003	0.47	0.0	0.04	13.12	0.00	2.173	6.61	0.00	2.5	97.5	0.0	1.60	0.68	0.86	2.20	3.0	0.004	0.54	0.0	0.04	15.64	0.00	1.926	6.40	1.12	1.7	98.3	0.0	3.54	0.42	0.68	0.88	2.33	18756	1269	15	0	0	0	9500	logfile
✔	7NKN	12445	2022-07-04	2021-02-18	2.71	2.61	—	2.8	0.003	0.47	0.0	0.04	13.52	0.00	2.078	5.11	0.00	2.6	97.4	0.0	1.75	0.69	0.86	3.48	2.8	0.005	0.56	0.0	0.04	14.98	0.00	2.067	6.29	0.25	1.9	98.1	0.0	3.52	0.91	0.70	0.88	2.98	16846	1156	12	0	0	0	8457	logfile
✔	7VG2	31963	2022-07-03	2021-09-14	3.1	2.73	—	3.0	0.016	1.43	1.0	0.09	12.86	0.01	1.822	17.62	1.74	8.0	91.8	0.2	-3.84	0.72	0.79	3.83	3.0	0.003	0.64	0.0	0.04	13.95	0.01	2.162	14.88	0.27	6.5	93.5	0.0	0.08	1.24	0.70	0.78	2.20	8203	845	4	71	3	0	0	logfile
✔	7NKH	12439	2022-07-07	2021-02-18	2.78	2.86	—	2.8	0.002	0.50	0.0	0.04	14.54	0.00	2.013	3.97	0.00	2.1	97.8	0.1	1.32	0.84	0.88	4.82	2.8	0.004	0.51	0.0	0.04	15.32	0.00	1.731	4.04	0.21	2.1	97.9	0.1	1.28	0.23	0.84	0.89	4.67	45277	2959	18	0	11	16	22565	logfile
✔	7RZ9	24755	2022-07-05	2021-08-27	4.15	3.58	—	4.1	0.007	0.98	0.0	0.05	10.41	0.01	2.264	3.46	0.26	5.6	94.4	0.0	-5.15	0.68	0.80	—	4.1	0.003	0.60	0.0	0.04	13.18	0.00	2.187	8.49	0.07	3.7	96.3	0.0	0.05	1.16	0.69	0.79	—	27934	3550	4	0	0	0	0	logfile
✔	7NKJ	12441	2022-07-07	2021-02-18	2.17	2.16	—	2.1	0.005	0.59	0.0	0.05	16.78	0.00	1.958	2.92	1.05	1.8	98.2	0.1	1.04	0.80	0.89	6.04	2.1	0.004	0.55	0.0	0.04	16.76	0.00	1.766	2.97	1.05	1.6	98.3	0.1	1.18	0.12	0.80	0.90	5.92	45605	2945	20	0	11	516	22478	logfile
✔	7NK7	12432	2022-07-07	2021-02-17	2.11	2.13	—	2.1	0.006	0.63	0.0	0.05	16.46	0.00	2.121	3.65	0.88	1.8	98.1	0.1	1.07	0.80	0.89	5.91	2.1	0.003	0.55	0.0	0.04	16.33	0.00	1.838	3.54	0.84	1.8	98.1	0.1	1.33	0.22	0.81	0.91	5.74	45644	2954	20	0	11	459	22525	logfile
✔	7PG9	13389	2022-07-07	2021-08-13	3.7	4.05	—	3.7	0.003	0.63	0.0	0.04	7.81	0.00	2.144	8.65	0.02	2.9	97.0	0.1	-2.89	0.85	0.79	2.74	3.7	0.005	0.80	0.0	0.05	13.92	0.00	2.117	13.04	0.40	3.1	96.9	0.0	0.61	0.90	0.90	0.87	2.58	45326	6195	28	0	0	0	0	logfile
✔	7V77	31761	2022-07-05	2021-08-21	3.3	3.76	—	3.6	0.004	0.59	0.0	0.05	13.43	0.00	2.077	8.65	0.00	6.2	93.7	0.1	-0.49	0.77	0.77	2.10	3.6	0.006	0.68	0.0	0.05	15.08	0.00	2.113	9.75	0.48	7.1	92.8	0.1	-0.84	0.36	0.80	0.82	1.80	25293	3102	36	0	77	0	0	logfile
✔	7V9M	31825	2022-07-03	2021-08-26	3.29	2.28	—	2.1	0.004	0.65	0.0	0.05	13.19	0.01	2.195	4.89	0.23	4.4	95.6	0.0	-0.30	0.72	0.72	3.08	2.1	0.003	0.63	0.0	0.04	15.68	0.00	2.152	11.26	0.23	3.3	96.7	0.0	0.68	1.18	0.73	0.75	1.71	8138	1029	6	0	0	0	0	logfile
✔	7PN1	13545	2022-07-03	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.004	0.67	0.0	0.04	14.54	0.00	1.917	7.03	0.18	2.8	97.2	0.0	1.37	0.97	0.60	0.80	0.70	10384	657	1	0	0	0	5237	logfile
✔	7PMY	13544	2022-07-03	2021-09-04	3.8	4.01	3.75	3.9	0.002	0.46	0.0	0.04	9.15	0.00	2.008	5.43	1.40	2.0	97.9	0.2	0.55	0.66	0.79	2.91	3.9	0.003	0.54	0.0	0.04	12.30	0.00	2.002	8.10	0.18	4.0	96.0	0.0	0.63	0.79	0.65	0.80	2.08	10499	659	2	0	0	0	5276	logfile
✔	7EEQ	31080	2022-07-06	2021-03-19	3.96	3.15	—	3.0	0.006	0.98	0.0	0.06	10.42	0.01	2.316	4.10	0.17	12.0	88.0	0.0	-4.80	0.52	0.74	2.63	3.0	0.004	0.72	0.0	0.05	13.69	0.00	2.186	9.94	0.22	9.6	90.4	0.0	-3.24	1.16	0.53	0.76	2.87	34260	4488	24	0	0	0	0	logfile

• ← previous
• Page 4 of 392
• next →