Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XLB	22238	2022-12-12	2020-06-28	3.8	4.01	—	3.8	0.002	0.43	0.0	0.04	13.65	0.00	2.235	7.33	0.00	2.0	98.0	0.0	-2.43	0.82	0.77	1.14	3.8	0.005	0.74	0.0	0.05	16.13	0.00	2.128	20.65	0.16	3.7	96.3	0.0	-0.32	0.88	0.84	0.82	1.36	11180	1380	4	0	0	0	0	logfile
✔	7F4G	31450	2022-12-15	2021-06-18	2.78	3.30	—	3.2	0.017	1.11	4.0	0.07	14.67	0.01	1.898	15.11	1.43	8.7	91.0	0.3	-3.97	0.69	0.81	3.30	3.2	0.003	0.68	0.0	0.04	16.83	0.00	2.133	12.01	2.79	5.2	94.8	0.0	-0.32	1.20	0.63	0.76	2.29	27957	3491	17	0	5	0	0	logfile
✔	7NQK	12528	2022-12-11	2021-03-01	3.5	3.75	3.51	3.6	0.005	0.84	0.0	0.05	14.92	0.00	2.035	16.48	0.90	8.6	91.4	0.0	-1.81	0.58	0.82	2.00	3.6	0.003	0.73	0.0	0.04	16.61	0.00	2.139	12.66	0.75	9.4	90.6	0.0	-0.76	0.46	0.58	0.81	1.79	6139	781	2	0	0	0	0	logfile
✔	7MBV	23748	2022-12-16	2021-04-01	2.8	3.34	—	3.0	0.003	0.58	0.0	0.04	12.62	0.01	2.280	7.21	0.00	2.3	97.7	0.0	1.48	0.77	0.82	3.83	3.1	0.005	0.57	0.0	0.04	14.55	0.00	2.278	5.90	1.45	2.6	97.4	0.0	2.06	0.46	0.74	0.90	3.52	30804	3984	8	0	24	0	0	logfile
✔	7AFN	11771	2022-12-14	2020-09-19	3.86	5.27	3.89	3.0	0.009	1.02	3.0	0.07	17.92	0.02	1.755	23.16	0.00	6.9	93.1	0.0	-1.93	0.90	0.83	0.72	3.0	0.004	0.77	0.0	0.04	17.02	0.01	1.840	27.30	0.65	3.5	96.5	0.0	0.06	1.73	0.91	0.88	0.72	18520	1108	11	456	12	0	0	logfile
✔	7AFD	11761	2022-12-14	2020-09-19	3.44	4.47	3.35	2.4	0.009	0.89	3.0	0.05	16.75	0.02	1.850	30.02	0.00	6.2	93.8	0.0	-2.70	0.89	0.85	0.96	2.3	0.003	0.73	0.0	0.03	16.71	0.01	1.892	22.99	0.76	5.3	94.6	0.1	-0.71	1.33	0.89	0.87	1.39	18531	1108	12	456	23	0	0	logfile
✔	7AFH	11765	2022-12-14	2020-09-19	3.59	4.69	6.66	2.8	0.009	0.89	2.0	0.05	16.84	0.02	1.752	32.84	0.00	7.5	92.5	0.0	-2.59	0.88	0.82	0.54	2.8	0.009	0.97	0.0	0.04	17.46	0.01	1.674	40.14	1.09	6.3	93.7	0.0	-1.48	1.30	0.89	0.86	0.91	18482	1103	11	456	12	0	0	logfile
✔	7AFK	11768	2022-12-14	2020-09-19	4.9	5.45	4.73	3.0	0.008	0.88	1.0	0.05	18.40	0.02	1.519	42.50	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	2.9	0.006	0.83	0.0	0.04	18.01	0.01	1.817	46.34	0.00	7.5	92.5	0.0	-1.52	0.78	0.88	0.85	—	18521	1108	11	456	13	0	0	logfile
✔	7AFA	11758	2022-12-14	2020-09-19	2.95	3.82	2.97	2.9	0.008	0.80	6.0	0.05	14.29	0.02	1.456	11.48	0.00	2.9	97.1	0.0	-1.10	0.86	0.88	1.92	2.9	0.007	0.87	0.0	0.04	15.41	0.01	1.832	21.15	3.16	4.3	95.7	0.0	-0.26	1.27	0.87	0.91	1.72	18482	1101	11	456	26	0	0	logfile
✔	7AFL	11769	2022-12-18	2020-09-19	4.2	5.13	4.56	3.0	0.010	1.08	6.0	0.06	17.44	0.01	1.852	43.80	0.00	6.0	94.0	0.0	-1.84	0.89	0.87	—	2.8	0.006	0.75	0.0	0.04	16.54	0.01	1.824	42.74	0.00	6.4	93.6	0.0	-1.43	0.72	0.89	0.88	—	34322	1487	15	1054	25	0	0	logfile
✔	7AFi	11766	2022-12-18	2020-09-19	3.53	4.65	3.55	2.4	0.011	0.99	8.0	0.06	16.69	0.01	1.836	33.85	0.00	9.0	91.0	0.0	-2.95	0.91	0.89	0.98	2.4	0.004	0.68	0.0	0.03	16.14	0.01	1.869	26.14	0.79	5.1	94.9	0.0	-1.01	1.29	0.91	0.89	0.80	33803	1387	14	1066	46	0	0	logfile
✔	7NAS	12246	2022-12-16	2021-01-25	3.31	4.38	7.71	2.7	0.009	0.80	3.0	0.05	15.55	0.01	1.629	26.01	0.00	8.1	91.9	0.0	-3.73	0.90	0.90	1.47	2.7	0.007	0.72	0.0	0.04	15.80	0.01	1.765	26.92	1.00	5.5	94.5	0.0	-1.16	1.21	0.90	0.91	1.31	32390	1454	15	974	43	0	0	logfile
✔	6XLD	22240	2022-12-12	2020-06-28	3.66	3.78	—	3.7	0.003	0.51	0.0	0.04	9.94	0.00	2.061	5.73	0.58	1.5	98.5	0.0	-3.76	0.77	0.75	1.85	3.7	0.002	0.61	0.0	0.04	14.50	0.00	1.951	10.18	0.00	3.1	96.9	0.0	-0.23	1.41	0.80	0.81	2.33	10992	1349	5	0	4	0	0	logfile
✔	7AF5	11753	2022-12-14	2020-09-19	2.96	3.21	2.95	2.9	0.008	0.74	2.0	0.05	14.96	0.02	1.876	10.32	0.00	4.6	95.4	0.0	-1.98	0.85	0.87	2.87	2.9	0.005	0.74	0.0	0.04	15.91	0.01	1.870	12.48	3.26	4.1	95.8	0.1	0.07	1.21	0.86	0.90	2.52	18531	1104	11	456	53	0	0	logfile
✔	7AFo	11772	2022-12-18	2020-09-19	3.93	5.33	3.93	3.2	0.014	1.98	7.0	0.10	16.54	0.04	1.857	2.04	0.71	4.2	95.8	0.0	-1.97	0.91	0.88	1.13	3.1	0.005	0.73	0.0	0.04	16.41	0.01	1.870	28.68	0.57	4.3	95.7	0.1	-1.13	2.54	0.91	0.89	0.51	34134	1691	16	971	20	0	0	logfile
✔	7AF8	11756	2022-12-14	2020-09-19	2.75	3.17	2.81	2.9	0.006	0.62	4.0	0.04	13.77	0.02	2.002	6.56	0.00	3.6	96.4	0.0	-0.93	0.84	0.87	2.54	2.9	0.006	0.73	0.0	0.04	15.21	0.01	1.879	10.79	3.80	4.5	95.4	0.1	0.95	0.51	0.86	0.90	2.40	18565	1109	11	456	52	0	0	logfile
✔	7AF3	11751	2022-12-14	2020-09-19	2.82	3.14	2.89	3.0	0.010	0.86	3.0	0.05	14.11	0.02	1.884	7.81	0.87	2.6	97.4	0.0	-0.44	0.82	0.88	2.69	3.0	0.003	0.67	0.0	0.03	15.41	0.01	1.955	9.25	3.03	2.8	97.1	0.1	0.62	0.57	0.83	0.90	2.44	18580	1111	11	456	52	0	0	logfile
✔	7o7F	12746	2022-12-12	2021-04-13	3.15	3.42	3.19	3.4	0.004	0.64	0.0	0.04	14.02	0.00	1.932	8.15	0.16	2.5	97.5	0.0	0.48	0.70	0.77	2.29	3.4	0.003	0.61	0.0	0.04	15.79	0.00	2.083	10.09	0.16	2.2	97.8	0.0	0.33	0.52	0.69	0.74	2.20	11170	1420	7	0	0	0	0	logfile
✔	7B9F	12103	2022-12-12	2020-12-14	3.0	3.81	—	3.5	0.008	1.01	1.0	0.06	12.03	0.01	2.247	4.16	0.00	3.4	96.6	0.0	-0.11	0.61	0.82	2.32	3.5	0.005	0.82	0.0	0.05	15.26	0.00	2.100	11.38	2.03	3.4	96.6	0.0	1.42	0.58	0.62	0.83	1.53	11270	1475	5	0	0	0	0	logfile
✔	7N1T	24122	2022-12-15	2021-05-28	3.11	2.80	—	2.2	0.013	1.78	13.0	0.11	14.50	0.01	1.917	6.19	0.96	6.0	93.3	0.7	-1.65	0.83	0.82	3.61	2.2	0.006	0.82	0.0	0.05	15.61	0.00	1.888	12.15	0.17	5.8	94.0	0.1	-0.31	1.00	0.84	0.85	2.94	27717	3345	39	0	114	0	0	logfile

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