Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WWK	21938	2021-09-04	2020-05-09	3.0	2.39	3.00	3.2	0.013	0.84	2.0	0.07	13.59	0.02	1.963	4.74	1.65	4.1	95.8	0.1	-3.02	0.63	0.82	4.46	3.2	0.003	0.72	0.0	0.05	17.10	0.00	1.256	8.69	2.21	3.2	96.8	0.0	0.20	1.40	0.64	0.86	3.42	19698	2473	12	2	9	0	0	logfile
✔	7CX3	30490	2021-09-02	2020-09-01	2.8	3.05	—	3.0	0.006	0.67	0.0	0.05	12.64	0.00	2.109	7.86	0.00	4.0	96.0	0.0	-1.96	0.68	0.81	3.41	3.0	0.002	0.56	0.0	0.04	15.84	0.00	2.153	6.27	1.67	2.8	97.2	0.0	0.80	1.13	0.68	0.83	3.08	7923	1019	6	0	1	0	0	logfile
✔	6ZUo	11440	2021-09-05	2020-07-23	3.1	3.60	—	3.2	0.008	1.11	0.0	0.06	16.01	0.01	2.204	6.20	0.40	5.7	94.2	0.1	-4.11	0.67	0.80	1.80	3.2	0.006	0.80	0.0	0.04	17.44	0.01	1.504	21.57	0.69	5.3	94.7	0.0	-1.01	2.20	0.69	0.81	1.24	77098	5217	38	1665	3	0	0	logfile
✔	7CX4	30491	2021-09-02	2020-09-01	2.9	3.15	—	3.1	0.004	0.81	0.0	0.05	13.18	0.00	2.032	7.86	0.00	3.5	96.5	0.0	-1.78	0.66	0.80	3.58	3.1	0.002	0.60	0.0	0.04	16.48	0.00	2.161	7.09	2.39	2.8	97.2	0.0	0.53	1.15	0.68	0.82	2.63	7926	1020	6	0	1	0	0	logfile
✔	7CX2	30489	2021-09-02	2020-09-01	2.8	3.21	—	3.1	0.006	0.84	0.0	0.16	13.53	0.01	1.994	8.35	0.12	3.7	96.3	0.0	-2.13	0.69	0.82	3.34	3.2	0.003	0.61	0.0	0.04	16.20	0.00	2.119	6.50	0.83	2.0	98.0	0.0	0.85	1.18	0.68	0.82	3.22	7930	1020	6	0	1	1	0	logfile
✔	7LX5	23566	2021-09-02	2021-03-03	3.44	3.85	3.41	3.9	0.005	0.62	0.0	0.04	10.10	0.00	2.198	4.72	0.00	3.4	96.6	0.0	-0.46	0.71	0.81	3.26	3.9	0.006	0.89	0.0	0.04	16.03	0.01	2.170	11.20	0.54	3.8	96.2	0.0	-0.59	1.44	0.73	0.84	3.54	3485	448	3	0	0	0	0	logfile
✔	7LV9	23530	2021-09-02	2021-02-24	4.5	7.82	4.59	4.4	0.003	0.64	0.0	0.04	27.26	0.00	1.334	3.02	0.00	3.2	96.8	0.0	-3.35	0.82	0.66	—	4.5	0.005	0.69	0.0	0.04	29.78	0.00	2.098	23.53	0.00	3.2	96.8	0.0	0.82	3.69	0.89	0.87	—	8238	581	8	190	0	0	0	logfile
✔	7LMB	23439	2021-09-04	2021-02-05	3.8	3.98	—	3.9	0.004	0.63	0.0	0.04	17.20	0.00	2.160	11.64	0.06	6.7	93.3	0.0	-3.71	0.77	0.75	1.90	3.9	0.003	0.62	0.0	0.04	18.42	0.00	2.186	11.55	0.24	5.1	94.9	0.0	-0.29	0.70	0.78	0.76	1.23	18498	1837	9	162	1	0	0	logfile
✔	6ZV6	11441	2021-09-05	2020-07-24	2.9	3.51	—	3.2	0.008	1.07	0.0	0.05	15.86	0.01	2.116	5.49	0.48	5.7	94.2	0.1	-3.48	0.70	0.83	2.33	3.2	0.006	0.82	0.0	0.04	17.55	0.01	2.020	16.95	2.94	6.0	93.9	0.1	-0.88	1.66	0.71	0.84	1.79	76226	5048	38	1683	5	3	0	logfile
✔	7L1K	23110	2021-09-02	2020-12-14	3.16	3.38	3.16	3.4	0.011	1.31	5.0	0.24	14.90	0.01	2.317	5.55	0.75	9.8	89.9	0.3	-6.55	0.73	0.88	3.48	3.4	0.003	0.66	0.0	0.04	15.83	0.00	2.126	6.46	0.00	7.9	92.1	0.0	-1.69	0.97	0.76	0.89	2.63	7217	883	6	0	2	0	0	logfile
✔	7NS4	12560	2021-09-02	2021-03-05	3.9	3.81	3.79	3.8	0.006	0.79	0.0	0.05	14.40	0.00	2.116	9.07	0.00	10.8	89.2	0.0	-1.02	0.75	0.84	2.90	3.8	0.003	0.64	0.0	0.04	15.95	0.00	2.231	7.96	1.02	8.3	91.7	0.0	0.56	0.37	0.73	0.82	2.27	5465	698	4	0	2	0	0	logfile
✔	7D72	30599	2021-09-05	2020-10-02	3.4	3.58	—	3.5	0.013	1.11	4.0	0.07	17.23	0.01	1.640	10.07	8.56	4.9	94.8	0.2	-2.44	0.74	0.83	2.58	3.5	0.005	0.78	0.0	0.05	16.88	0.01	2.025	11.16	0.57	5.6	94.4	0.0	-0.69	1.68	0.75	0.85	2.55	35458	4505	27	0	15	6	0	logfile
✔	7CGB	30354	2021-09-03	2020-07-01	3.4	4.20	—	3.8	0.004	0.79	21.0	0.05	13.10	0.00	2.035	15.63	1.60	5.2	94.6	0.1	-1.64	0.59	0.80	1.16	3.8	0.003	0.69	0.0	0.04	14.79	0.00	2.111	15.11	0.47	5.3	94.6	0.0	-0.87	0.58	0.60	0.81	1.12	64834	8822	22	0	0	0	0	logfile
✔	7E23	30950	2021-09-02	2021-02-04	3.3	3.62	—	3.6	0.004	0.82	0.0	0.05	14.42	0.01	2.123	13.88	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.012	1.56	0.0	0.05	16.65	0.01	2.039	14.37	0.00	14.5	85.2	0.3	-2.92	1.16	0.70	0.78	1.76	3133	403	4	0	1	0	0	logfile
✔	7NHo	12335	2021-09-04	2021-02-11	2.66	3.46	—	3.3	0.014	2.20	1.0	0.43	19.52	0.02	1.974	2.65	1.77	5.4	94.4	0.1	-2.33	0.58	0.79	3.76	3.3	0.005	0.74	0.0	0.05	18.52	0.01	1.869	10.03	2.19	3.1	96.8	0.0	1.04	1.72	0.64	0.85	3.26	19800	2086	26	0	62	0	0	logfile
✔	7NHP	12336	2021-09-04	2021-02-11	2.72	3.44	—	3.4	0.012	2.19	0.0	0.29	19.08	0.01	1.924	5.95	1.36	5.8	93.8	0.3	-2.63	0.58	0.78	3.10	3.3	0.004	0.78	0.0	0.04	18.64	0.01	1.887	11.68	3.04	3.4	96.5	0.0	0.85	1.77	0.62	0.83	3.01	21839	2350	26	0	60	0	0	logfile
✔	7NHQ	12337	2021-09-04	2021-02-11	2.68	3.36	—	3.3	0.012	2.30	4.0	0.41	19.57	0.01	1.790	4.38	1.77	5.1	94.6	0.3	-2.58	0.59	0.77	3.11	3.3	0.003	0.74	0.0	0.04	18.33	0.00	1.830	10.43	3.26	2.9	97.1	0.0	1.04	1.77	0.63	0.83	3.11	20946	2237	27	0	60	0	0	logfile
✔	7LV8	23529	2021-09-03	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.28	0.00	1.334	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.003	0.57	0.0	0.03	27.68	0.00	2.245	9.01	0.00	2.0	98.0	0.0	2.30	0.65	0.72	0.81	1.11	10651	764	10	242	0	0	0	logfile
✔	7C1D	30269	2021-09-02	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	17.40	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.89	0.00	2.232	21.81	0.52	20.1	79.9	0.0	-4.46	2.84	0.42	0.76	2.27	2034	306	6	0	0	0	0	logfile
✔	7BGL	12183	2021-09-04	2021-01-07	2.2	2.57	2.32	2.5	0.007	0.65	0.0	0.08	19.44	0.00	1.980	29.57	2.50	7.3	92.7	0.0	0.56	0.73	0.86	3.07	2.5	0.004	0.64	0.0	0.05	16.86	0.00	2.150	8.50	3.42	7.8	92.2	0.0	-0.20	0.45	0.75	0.89	3.16	120484	15626	104	0	52	0	0	logfile

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