Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iFZ	9659	2022-05-14	2018-09-21	3.58	3.57	—	3.5	0.008	1.15	2.0	0.07	16.35	0.01	1.258	12.63	0.96	10.7	88.8	0.5	-5.16	0.72	0.80	2.37	3.5	0.005	0.88	0.0	0.04	17.56	0.00	1.532	15.97	0.21	8.4	91.5	0.1	-2.23	1.66	0.72	0.79	2.02	19185	2254	11	62	1	0	0	logfile
✔	6HRF	0260	2022-05-12	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	8.66	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.58	0.00	2.181	9.08	0.25	6.7	93.3	0.0	-3.41	3.72	0.37	0.78	3.35	3522	462	6	0	0	0	0	logfile
✔	6oiS	20080	2022-05-13	2019-04-09	3.6	3.71	—	3.6	0.009	1.05	0.0	0.06	10.80	0.01	2.315	5.76	0.68	4.2	95.8	0.0	-2.46	0.78	0.81	3.12	3.6	0.003	0.62	0.0	0.04	14.60	0.00	2.118	8.97	0.34	2.6	97.4	0.0	1.37	2.26	0.79	0.83	2.68	10732	1365	6	0	0	0	0	logfile
✔	6RZA	10060	2022-05-13	2019-06-13	4.5	4.56	4.30	4.5	0.009	1.85	16.0	0.11	17.44	0.01	2.089	9.66	6.90	4.4	94.9	0.6	-2.20	0.60	0.71	—	4.5	0.003	0.74	0.0	0.04	14.93	0.01	1.935	20.45	0.00	4.6	95.3	0.1	-0.64	2.78	0.60	0.70	—	14908	1867	9	2	6	0	0	logfile
✔	6GC8	4383	2022-05-16	2018-04-17	3.8	4.18	—	3.9	0.002	0.57	0.0	0.03	12.93	0.00	2.129	3.91	0.16	6.3	93.5	0.2	-4.04	0.71	0.60	0.92	3.9	0.005	0.72	0.0	0.04	15.79	0.01	1.574	21.78	0.32	9.0	90.9	0.1	-2.06	1.97	0.82	0.78	0.65	88884	3090	42	3016	6	42	0	logfile
✔	6GC7	4382	2022-05-12	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.14	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.003	0.60	0.0	0.03	15.02	0.00	1.979	22.87	0.07	8.8	91.1	0.1	-1.90	1.64	0.91	0.86	—	54410	1738	17	1901	0	0	0	logfile
✔	6GC6	4381	2022-05-13	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.32	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.009	0.78	0.0	0.04	15.63	0.01	1.997	33.40	0.06	10.2	89.7	0.1	-2.20	2.13	0.91	0.86	—	61404	2118	19	2092	0	0	0	logfile
✔	6KiV	9999	2022-05-16	2019-07-20	4.0	4.16	—	4.0	0.007	0.89	0.0	0.05	22.53	0.01	2.263	5.31	0.00	9.6	90.4	0.0	-3.80	0.75	0.75	—	4.0	0.003	0.68	0.0	0.04	24.16	0.00	2.058	13.11	0.19	6.4	93.6	0.0	-1.62	0.86	0.77	0.78	—	20719	1865	16	290	1	0	0	logfile
✔	6GBZ	4378	2022-05-16	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.85	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.004	0.68	0.0	0.04	15.70	0.01	1.977	17.94	0.96	9.8	90.1	0.1	-1.94	0.85	0.78	0.77	0.96	86401	3074	29	2908	0	0	0	logfile
✔	6KiW	0693	2022-05-15	2019-07-20	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	22.54	0.01	2.182	4.42	0.00	9.1	90.9	0.0	-3.96	0.70	0.74	—	4.0	0.009	0.89	0.0	0.04	23.89	0.01	1.876	13.74	0.13	7.8	92.2	0.0	-1.53	0.72	0.72	0.76	—	20225	1809	16	289	1	0	0	logfile
✔	6KiU	9998	2022-05-16	2019-07-20	3.2	3.29	—	3.2	0.007	0.85	0.0	0.05	21.97	0.01	2.178	3.27	0.00	6.6	93.4	0.0	-3.67	0.72	0.78	2.19	3.2	0.004	0.63	0.0	0.04	23.45	0.00	2.113	8.48	0.13	3.7	96.3	0.0	-0.97	1.26	0.72	0.80	1.78	20503	1839	16	290	1	0	0	logfile
✔	6GC4	4380	2022-05-15	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.16	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.008	0.82	0.0	0.04	15.48	0.01	1.125	27.99	0.04	10.7	89.1	0.2	-2.52	0.87	0.80	0.79	—	80165	2836	26	2705	0	0	0	logfile
✔	6KiX	0694	2022-05-15	2019-07-20	4.1	4.17	—	4.1	0.006	0.83	0.0	0.05	22.57	0.01	2.219	3.46	0.00	8.6	91.4	0.0	-3.74	0.71	0.73	—	4.1	0.003	0.61	0.0	0.04	22.95	0.00	2.169	10.59	0.07	5.8	94.2	0.0	-1.33	0.82	0.73	0.76	—	19900	1763	15	290	1	0	0	logfile
✔	6CVM	7770	2022-05-17	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.92	0.0	0.07	10.17	0.01	2.053	3.98	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	2.3	0.005	0.63	0.0	0.05	13.84	0.00	1.973	6.97	0.69	2.2	97.8	0.0	0.70	0.37	0.85	0.94	6.94	37062	4084	12	0	20	4194	0	logfile
✔	5LKH	4068	2022-05-17	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.004	0.83	0.0	0.04	15.55	0.01	2.085	26.64	0.22	6.6	93.4	0.0	-0.75	2.06	0.50	0.56	0.33	37345	4740	5	0	0	0	0	logfile
✔	5LKi	4068	2022-05-12	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.63	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.003	0.82	0.0	0.04	15.10	0.00	2.086	15.11	0.39	6.9	92.7	0.4	0.29	0.82	0.63	0.80	1.58	55415	7135	5	0	0	0	0	logfile
✔	6RQJ	4983	2022-05-13	2019-05-15	3.5	4.14	3.49	3.7	0.006	0.74	0.0	0.11	14.34	0.00	2.041	11.21	0.06	6.9	92.9	0.2	-4.28	0.84	0.75	2.30	3.8	0.003	0.64	0.0	0.04	15.37	0.00	2.181	11.01	0.24	5.3	94.7	0.0	-0.71	0.49	0.89	0.85	2.06	14971	1899	6	0	2	0	0	logfile
✔	6R6B	4734	2022-05-13	2019-03-26	3.5	4.29	3.51	3.9	0.010	1.36	1.0	0.07	12.49	0.01	1.771	6.90	1.97	8.6	91.1	0.4	-5.15	0.70	0.70	2.25	3.9	0.004	1.07	0.0	0.05	15.94	0.01	2.108	18.62	0.31	7.1	92.9	0.1	-0.67	4.27	0.73	0.85	0.89	11416	1452	10	0	0	0	0	logfile
✔	6R69	4733	2022-05-13	2019-03-26	3.65	4.14	3.57	3.7	0.005	0.90	0.0	0.04	14.42	0.01	2.191	13.18	0.15	9.8	89.8	0.4	-3.99	0.75	0.76	0.73	3.8	0.004	0.94	0.0	0.05	16.08	0.01	2.138	14.95	0.36	7.6	92.3	0.1	0.08	0.94	0.76	0.83	0.86	12541	1629	10	0	0	0	0	logfile
✔	5FTN	3299	2022-05-16	2016-01-14	3.3	2.95	—	2.9	0.012	1.27	0.0	0.07	10.98	0.01	2.234	22.51	0.32	7.4	91.7	1.0	-4.38	0.62	0.80	3.11	2.9	0.004	0.78	0.0	0.05	15.58	0.01	1.863	11.68	0.53	8.8	90.6	0.5	-0.70	1.29	0.63	0.79	2.27	34956	4422	12	0	24	0	0	logfile

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