Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MJP	23881	2023-02-21	2021-04-20	4.2	4.40	—	4.3	0.007	1.11	0.0	0.07	7.09	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.59	0.0	0.04	5.47	0.00	2.285	0.87	0.00	6.8	93.2	0.0	-0.36	0.44	0.56	0.69	—	14163	2818	10	0	8	0	0	logfile
✔	4V19	2787	2023-02-27	2014-09-25	3.4	3.44	—	3.4	0.009	1.32	0.0	0.05	20.28	0.05	1.860	9.75	6.97	3.8	96.1	0.1	-2.85	0.76	0.88	2.04	3.4	0.003	1.00	0.0	0.04	19.43	0.01	1.122	8.45	0.58	3.5	96.5	0.1	0.02	1.52	0.76	0.87	2.12	69409	4361	42	1583	171	204	0	logfile
✔	6PES	20331	2023-02-17	2019-06-20	3.6	3.82	—	4.0	0.009	0.70	0.0	0.06	12.87	0.01	2.432	11.45	0.00	12.3	87.7	0.0	-1.79	0.38	0.78	1.73	4.0	0.004	0.61	0.0	0.05	14.62	0.00	2.275	9.16	0.24	7.5	92.5	0.0	-2.54	0.55	0.43	0.82	2.73	4040	590	10	0	0	0	0	logfile
✔	7WTG	32785	2023-02-17	2022-02-04	3.8	3.93	—	3.9	0.006	1.20	0.0	0.07	14.44	0.01	2.297	4.61	0.00	9.1	90.9	0.0	-2.94	0.67	0.73	2.60	3.9	0.003	0.77	0.0	0.05	15.85	0.01	2.100	12.76	0.56	9.3	90.5	0.2	-2.41	0.66	0.70	0.76	1.80	3318	425	3	0	0	0	0	logfile
✔	7LXB	23569	2023-02-21	2021-03-03	3.26	3.63	—	3.7	0.009	1.43	0.0	0.05	20.27	0.01	2.203	22.95	0.58	13.9	85.5	0.6	-2.03	0.76	0.73	1.37	3.7	0.003	0.76	0.0	0.05	20.60	0.00	2.111	17.36	0.30	8.8	91.1	0.1	-1.19	0.49	0.77	0.74	0.82	54280	6928	32	8	16	0	0	logfile
✔	5ZR1	6941	2023-02-24	2018-04-21	3.0	3.18	—	3.1	0.007	1.04	2.0	0.06	15.46	0.01	2.050	4.08	0.65	4.3	95.7	0.0	-5.16	0.77	0.84	3.94	3.1	0.005	0.65	0.0	0.04	18.51	0.00	1.851	7.81	2.34	3.8	96.2	0.0	-0.31	1.59	0.75	0.86	3.09	22260	2509	11	82	6	0	0	logfile
✔	7SQR	25391	2023-02-22	2021-11-06	3.4	4.22	3.33	3.9	0.003	0.63	0.0	0.04	13.78	0.00	2.185	6.82	0.00	3.1	96.9	0.0	1.05	0.85	0.83	2.86	3.9	0.003	0.56	0.0	0.04	15.09	0.00	2.122	7.17	0.22	4.4	95.6	0.0	0.69	0.46	0.85	0.84	3.00	17272	2216	12	0	0	0	0	logfile
✔	6i1X	0326	2023-02-22	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.003	0.77	0.0	0.05	16.37	0.00	2.134	17.07	0.28	4.8	95.0	0.2	-0.88	1.06	0.65	0.60	0.83	54915	7290	15	0	0	0	0	logfile
✔	7JZ6	22530	2023-02-23	2020-09-01	2.53	2.20	—	2.2	0.009	1.04	8.0	0.11	19.13	0.01	1.219	8.05	11.17	7.8	92.2	0.0	-3.03	0.58	0.65	2.78	2.2	0.003	0.62	0.0	0.04	19.08	0.00	2.177	5.78	5.84	2.8	97.2	0.0	0.25	1.59	0.57	0.66	2.47	20842	2646	12	0	4	18	0	logfile
✔	6SSX	10307	2023-02-17	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	3.0	0.008	0.80	0.0	0.06	16.95	0.00	2.222	13.38	4.47	13.2	86.8	0.0	-5.14	0.77	0.65	0.86	4.75	4900	730	10	0	0	0	0	logfile
✔	7Wo0	32637	2023-02-20	2022-01-20	2.7	2.93	2.56	2.9	0.007	0.91	0.0	0.06	15.45	0.01	2.538	5.18	0.00	3.2	96.8	0.0	-3.84	0.55	0.81	5.89	2.9	0.003	0.53	0.0	0.05	16.81	0.00	2.366	4.02	0.30	2.6	97.4	0.0	-2.18	0.66	0.54	0.85	5.28	12964	910	14	0	0	0	6622	logfile
✔	6PDT	20309	2023-02-27	2019-06-19	3.8	3.95	—	3.9	0.022	2.06	0.0	0.21	11.05	0.01	1.771	0.92	0.00	1.9	97.7	0.4	0.40	0.73	0.73	1.74	3.9	0.003	0.94	0.0	0.04	14.66	0.00	1.789	10.46	0.17	5.8	94.2	0.1	0.67	2.29	0.76	0.78	1.40	31364	2000	8	0	12	0	15636	logfile
✔	7EJE	31160	2023-02-18	2021-04-02	3.98	4.18	—	4.0	0.009	1.30	0.0	0.05	15.13	0.00	1.454	41.99	4.44	4.9	92.8	2.3	-2.37	0.58	0.73	1.42	4.0	0.003	0.76	0.0	0.04	18.40	0.00	1.958	16.31	0.40	4.0	95.0	1.0	0.33	4.28	0.63	0.84	1.58	7602	933	8	18	6	0	0	logfile
✔	7D43	30568	2023-02-27	2020-09-22	4.3	4.40	—	4.3	0.006	0.99	0.0	0.05	14.62	0.01	2.018	28.45	0.31	18.3	81.6	0.1	-6.11	0.83	0.79	—	4.3	0.005	0.79	0.0	0.05	13.78	0.00	2.083	20.44	0.00	12.6	87.3	0.0	-2.75	1.57	0.83	0.78	—	31009	4347	14	0	0	0	0	logfile
✔	7MiU	23865	2023-02-22	2021-04-17	2.6	2.58	—	2.6	0.015	2.02	4.0	0.12	14.40	0.01	1.966	4.76	2.22	4.3	95.1	0.7	-1.19	0.64	0.79	4.31	2.6	0.003	0.63	0.0	0.04	17.59	0.00	2.063	8.61	1.37	1.8	98.2	0.0	0.31	1.25	0.67	0.84	2.90	17412	2172	8	0	12	0	0	logfile
✔	6VBW	21146	2023-02-26	2019-12-19	3.2	3.31	—	3.3	0.011	1.19	2.0	0.07	14.36	0.01	2.057	12.06	1.96	8.5	91.4	0.1	-4.69	0.75	0.79	3.46	3.3	0.003	0.63	0.0	0.04	16.75	0.00	2.133	9.76	0.37	6.4	93.5	0.0	-1.58	1.31	0.79	0.85	2.45	29087	3343	15	107	4	0	0	logfile
✔	6F2D	4173	2023-02-20	2017-11-24	4.2	4.27	4.05	4.1	0.010	1.19	0.0	0.05	9.30	0.01	2.023	26.29	0.51	16.3	83.0	0.7	-6.32	0.71	0.72	—	4.1	0.003	0.89	0.0	0.04	12.97	0.01	2.156	12.99	0.00	7.5	91.9	0.6	0.19	2.03	0.75	0.77	—	12541	1629	10	0	0	0	0	logfile
✔	7Y5A	33614	2023-02-24	2022-06-16	3.5	4.25	3.40	3.6	0.003	0.60	0.0	0.04	14.47	0.00	1.986	6.54	0.04	2.7	97.3	0.0	0.45	0.90	0.85	1.38	3.6	0.002	0.54	0.0	0.04	15.88	0.00	1.944	7.00	0.16	2.6	97.4	0.0	0.64	0.29	0.90	0.85	1.23	23975	3164	12	0	10	0	0	logfile
✔	7M62	23687	2023-02-16	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.2	0.006	1.03	0.0	0.06	15.73	0.00	2.059	31.10	2.22	26.0	74.0	0.0	-4.94	2.76	0.57	0.68	2.84	2380	320	10	0	10	0	0	logfile
✔	6N3B	9350	2023-02-17	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.004	0.84	0.0	0.04	16.35	0.01	2.292	25.40	1.13	9.6	90.4	0.0	-5.16	1.50	0.42	0.70	1.16	2735	385	10	0	0	0	0	logfile

• ← previous
• Page 7 of 353
• next →