Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6M1H	30047	2023-08-11	2020-02-26	3.6	3.71	—	3.6	0.007	0.96	0.0	0.06	15.34	0.01	1.782	9.47	0.21	6.1	93.9	0.0	-4.70	0.82	0.79	1.90	3.6	0.003	0.70	0.0	0.04	16.54	0.00	2.159	12.89	0.21	4.4	95.6	0.0	-1.46	1.68	0.81	0.78	1.02	9036	1139	6	0	0	0	0	logfile
✔	7CZ6	30507	2023-08-09	2020-09-07	4.1	4.04	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	61.25	0.00	8.1	91.9	0.0	-1.66	0.68	0.64	—	4.1	0.004	0.84	0.0	0.05	11.13	0.01	2.108	15.25	0.00	5.5	94.5	0.0	-2.13	0.91	0.65	0.72	—	4535	630	5	0	0	0	0	logfile
✔	7YoZ	33991	2023-08-11	2022-08-02	4.3	4.57	4.38	4.3	0.003	0.55	0.0	0.03	27.62	0.00	2.269	6.78	0.00	1.4	98.6	0.0	0.64	0.85	0.72	—	4.3	0.004	0.74	0.0	0.04	29.71	0.01	2.196	19.72	0.00	1.9	98.1	0.0	0.22	1.82	0.89	0.83	—	9752	594	10	242	0	0	0	logfile
✔	7JHY	22340	2023-08-14	2020-07-21	3.9	3.99	—	4.0	0.005	1.14	0.0	0.06	16.51	0.01	2.185	4.92	0.00	14.8	85.0	0.2	-2.88	0.53	0.68	1.32	4.0	0.003	0.82	0.0	0.04	17.99	0.01	2.162	12.58	0.54	14.6	85.4	0.0	-2.07	2.02	0.55	0.71	0.82	16597	2083	12	31	0	0	0	logfile
✔	6QK7	4571	2023-08-16	2019-01-28	3.3	3.70	3.35	3.4	0.004	0.75	0.0	0.06	10.67	0.01	1.993	6.24	0.44	9.2	90.8	0.0	-4.70	0.86	0.82	2.57	3.4	0.002	0.64	0.0	0.04	13.28	0.00	2.138	7.84	0.22	6.7	93.3	0.0	-1.45	2.78	0.87	0.87	1.84	20790	2592	5	0	2	0	0	logfile
✔	7RWJ	24717	2023-08-11	2021-08-20	3.5	3.71	—	3.7	0.008	1.17	4.0	0.07	14.92	0.01	2.258	9.32	1.35	5.1	94.6	0.3	-3.76	0.78	0.80	2.26	3.7	0.003	0.61	0.0	0.04	15.68	0.00	2.169	6.84	0.29	4.8	95.0	0.2	0.74	0.47	0.78	0.80	1.93	9906	1212	4	0	8	0	0	logfile
✔	5MZ6	3583	2023-08-10	2017-01-31	3.8	3.83	—	3.8	0.005	1.05	0.0	0.05	11.57	0.01	2.269	8.71	0.70	5.2	94.8	0.0	-5.37	0.65	0.71	2.07	3.8	0.003	0.77	0.0	0.04	15.97	0.00	2.095	15.48	0.58	3.3	96.7	0.0	-0.23	0.83	0.74	0.77	0.95	8401	1092	2	0	0	0	0	logfile
✔	7VEB	31945	2023-08-23	2021-09-08	4.2	4.27	—	4.2	0.011	1.37	0.0	0.05	13.69	0.00	2.165	8.06	0.74	2.6	97.4	0.0	0.70	0.82	0.85	—	4.2	0.003	0.81	0.0	0.04	15.03	0.00	2.071	17.24	0.03	2.7	97.3	0.1	0.85	2.12	0.80	0.81	—	35530	4537	51	0	36	0	0	logfile
✔	6WVL	21922	2023-08-19	2020-05-06	3.2	3.69	3.05	3.8	0.013	1.98	5.0	0.10	16.20	0.02	1.944	0.63	0.41	1.8	98.2	0.0	-1.96	0.44	0.48	0.43	3.6	0.004	0.67	0.0	0.04	17.33	0.00	1.796	12.42	0.41	3.4	96.6	0.0	-0.06	2.50	0.49	0.74	2.41	26744	1712	8	2	6	0	13046	logfile
✔	6J5V	0682	2023-08-11	2019-01-12	4.25	4.42	—	4.3	0.009	1.18	0.0	0.07	16.24	0.01	2.263	10.12	0.94	14.2	85.8	0.0	-4.88	0.83	0.81	—	4.3	0.003	0.82	0.0	0.05	14.36	0.00	2.118	16.43	0.00	11.8	88.2	0.0	-2.76	0.67	0.82	0.79	—	10529	1315	4	0	2	0	0	logfile
✔	7EVW	31340	2023-08-10	2021-05-23	3.22	2.90	—	3.2	0.004	0.76	0.0	0.05	15.55	0.01	2.207	7.34	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	2.23	3.2	0.004	0.71	0.0	0.04	17.42	0.00	2.042	13.05	0.65	4.7	95.3	0.0	0.29	2.43	0.59	0.74	2.14	8672	1094	5	0	0	0	0	logfile
✔	7ZZ2	15032	2023-08-09	2022-05-25	2.48	2.80	2.37	2.1	0.005	0.76	0.0	0.05	17.25	0.01	2.132	4.21	3.27	2.2	97.8	0.0	-0.30	0.90	0.89	3.91	2.2	0.004	0.53	0.0	0.04	17.30	0.00	2.024	6.31	3.05	1.9	98.1	0.0	1.11	0.23	0.90	0.90	3.84	4366	541	1	0	3	57	0	logfile
✔	6KUV	9888	2023-08-13	2019-09-02	4.1	4.13	—	4.1	0.003	0.79	0.0	0.05	10.91	0.01	2.206	6.18	0.28	7.4	92.5	0.2	-4.84	0.69	0.72	—	4.1	0.003	0.74	0.0	0.04	14.40	0.00	2.132	10.92	0.14	7.2	92.8	0.1	-1.10	2.92	0.73	0.76	—	13720	1640	5	23	0	0	0	logfile
✔	6TYi	20583	2023-08-11	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	15.89	0.00	1.796	11.31	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.003	0.54	0.0	0.03	17.18	0.00	2.214	6.38	0.32	2.6	97.4	0.0	3.07	1.18	0.61	0.77	1.34	9184	1186	11	0	4	0	0	logfile
✔	6WVM	21923	2023-08-19	2020-05-06	3.3	3.76	3.18	3.8	0.013	1.96	6.0	0.10	16.19	0.02	1.972	0.67	0.55	1.9	98.1	0.0	-1.87	0.45	0.49	0.62	3.6	0.003	0.67	0.0	0.04	17.24	0.00	1.730	11.49	0.55	2.9	97.1	0.0	0.10	2.54	0.54	0.78	2.44	26744	1712	8	2	6	0	13046	logfile
✔	7R6N	24283	2023-08-10	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	17.22	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.84	0.0	0.04	17.84	0.01	1.759	18.86	0.00	0.0	0.0	0.0	—	1.27	0.59	0.76	—	7588	0	1	354	12	0	0	logfile
✔	6TYS	20584	2023-08-14	2019-08-09	3.5	3.77	—	3.7	0.021	1.95	6.0	0.11	11.19	0.01	2.321	0.84	0.17	2.0	98.0	0.0	0.77	0.79	0.85	2.59	3.7	0.004	0.69	0.0	0.05	14.83	0.00	2.200	6.43	0.57	3.6	96.4	0.0	0.78	2.07	0.77	0.85	2.40	16059	2022	24	0	39	0	0	logfile
✔	6WKT	21708	2023-08-09	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.57	0.0	0.03	16.11	0.00	2.212	10.95	0.00	4.8	95.2	0.0	3.85	1.35	0.64	0.76	3.76	3152	424	4	0	0	0	0	logfile
✔	5ZAL	6905	2023-08-12	2018-02-07	4.7	4.44	—	3.8	0.008	1.44	1.0	0.07	12.67	0.01	2.215	19.06	0.97	16.1	83.2	0.7	-5.19	0.87	0.74	—	3.8	0.005	0.95	0.0	0.05	13.33	0.01	2.089	38.66	0.00	16.3	83.5	0.2	-3.24	1.62	0.84	0.60	—	12346	1389	3	58	0	0	0	logfile
✔	6XoW	22282	2023-08-10	2020-07-07	4.6	8.17	4.40	7.0	0.006	1.00	0.0	0.05	13.39	0.01	1.991	24.14	0.23	4.2	95.8	0.0	-0.98	0.87	0.72	—	7.0	0.003	0.72	0.0	0.04	13.41	0.00	2.180	17.36	0.23	3.1	96.9	0.0	0.65	0.79	0.91	0.81	—	7711	966	1	0	0	0	0	logfile

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