Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K90	22737	2023-04-28	2020-09-27	3.24	3.51	—	3.5	0.005	0.73	11.0	0.06	14.21	0.00	1.169	15.04	1.22	5.0	94.6	0.3	-4.00	0.65	0.77	2.77	3.5	0.004	0.65	0.0	0.05	15.72	0.00	2.090	9.93	0.29	5.2	94.6	0.1	-1.44	1.22	0.66	0.83	2.88	28863	3711	12	0	33	0	0	logfile
✔	7M6E	23693	2023-04-29	2021-03-25	3.3	3.62	—	3.7	0.010	1.37	4.0	0.09	13.02	0.01	2.022	6.21	1.03	4.7	95.2	0.1	-0.48	0.63	0.72	1.45	3.7	0.004	0.71	0.0	0.05	15.20	0.00	2.125	12.82	0.56	4.9	95.1	0.0	-0.45	0.65	0.63	0.77	1.74	29796	3795	14	0	35	0	0	logfile
✔	7APK	11857	2023-04-27	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.07	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.007	0.80	0.0	0.04	13.05	0.00	2.079	13.91	0.12	6.6	93.3	0.1	0.97	1.14	0.50	0.44	0.92	72697	9893	30	0	74	0	0	logfile
✔	7AK6	11811	2023-04-23	2020-09-29	3.82	3.51	3.79	3.7	0.006	0.71	0.0	1.04	14.83	0.00	1.892	11.06	0.00	10.1	89.9	0.0	-4.80	0.64	0.78	2.19	3.5	0.008	1.63	0.0	0.31	16.78	0.00	2.072	10.20	0.17	4.6	95.4	0.0	0.01	1.32	0.66	0.80	1.64	65323	8061	60	0	21	0	0	logfile
✔	7UDU	26460	2023-04-23	2022-03-20	4.15	4.18	4.07	4.1	0.004	0.67	0.0	0.05	14.26	0.00	2.186	10.92	0.06	6.0	94.0	0.0	-0.29	0.55	0.65	—	4.1	0.003	0.73	0.0	0.04	14.65	0.00	1.892	13.07	0.18	5.3	94.7	0.0	-0.38	1.44	0.65	0.80	—	15711	1966	9	0	8	0	0	logfile
✔	7o9W	12765	2023-04-22	2021-04-17	3.5	2.85	—	3.4	0.006	0.86	0.0	0.07	16.93	0.01	2.149	18.99	4.42	4.7	95.2	0.1	-3.00	0.49	0.70	1.18	3.4	0.004	0.64	0.0	0.04	17.10	0.00	2.106	9.75	0.22	4.1	95.9	0.0	0.08	0.95	0.50	0.69	1.09	12618	1614	4	0	2	0	0	logfile
✔	6W6P	21562	2023-04-28	2020-03-17	2.9	2.21	—	1.7	0.010	1.07	0.0	0.06	16.55	0.01	1.989	6.48	16.52	12.1	87.6	0.3	-4.00	0.77	0.84	2.96	1.6	0.004	0.72	0.0	0.04	16.11	0.01	1.971	5.86	8.23	8.7	91.2	0.1	-1.86	1.60	0.79	0.86	2.56	133554	5058	51	4378	4	0	0	logfile
✔	7TNW	26021	2023-04-28	2022-01-21	3.1	2.85	—	2.9	0.014	1.82	21.0	0.13	13.93	0.01	2.197	5.99	1.81	7.7	91.5	0.8	-1.73	0.85	0.84	3.50	2.2	0.004	0.80	0.0	0.05	15.47	0.00	2.022	9.44	0.41	5.5	94.5	0.0	-0.27	1.06	0.86	0.84	2.83	27846	3357	39	0	111	0	0	logfile
✔	7B93	12095	2023-04-24	2020-12-14	3.04	3.13	3.09	3.0	0.006	0.81	0.0	1.03	14.70	0.00	1.904	7.73	0.03	4.1	95.9	0.0	-3.26	0.76	0.85	4.00	3.0	0.008	1.59	0.0	0.31	15.82	0.00	1.949	8.00	0.14	3.1	96.9	0.0	0.99	1.17	0.77	0.88	3.14	67492	8235	67	0	35	0	0	logfile
✔	7NiU	12365	2023-04-23	2021-02-14	4.2	3.68	—	3.5	0.008	1.01	0.0	0.05	15.90	0.01	2.110	34.12	1.67	14.7	85.0	0.2	-5.18	0.57	0.58	—	3.5	0.003	0.69	0.0	0.04	14.73	0.00	2.133	14.43	0.18	5.9	94.1	0.0	-1.65	1.64	0.57	0.57	—	15495	2015	6	0	2	0	0	logfile
✔	7NVW	12615	2023-04-26	2021-03-16	4.3	4.32	4.26	4.2	0.002	0.45	0.0	0.04	15.45	0.00	1.971	6.64	0.00	4.4	95.6	0.0	0.80	0.71	0.66	—	4.2	0.003	0.70	0.0	0.04	15.77	0.00	2.146	15.97	0.00	4.7	95.2	0.0	-0.42	1.05	0.73	0.68	—	23647	2814	17	42	35	0	0	logfile
✔	8AVX	15686	2023-04-20	2022-08-27	3.5	3.71	3.49	3.7	0.008	1.38	0.0	0.08	17.79	0.01	2.316	1.69	4.23	4.5	95.2	0.2	-4.05	0.69	0.67	0.44	3.6	0.003	0.73	0.0	0.04	17.86	0.00	2.183	9.87	0.40	3.7	96.3	0.0	-0.65	1.50	0.71	0.68	1.09	7427	961	4	0	2	0	0	logfile
✔	7NVX	12616	2023-04-26	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.65	0.00	1.971	6.61	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.004	0.72	0.0	0.04	18.10	0.00	0.904	15.84	0.32	5.1	94.8	0.0	-0.66	0.93	0.72	0.67	1.17	23663	2796	18	50	35	0	0	logfile
✔	7FEB	31551	2023-04-26	2021-07-19	2.11	2.54	—	2.6	0.004	0.65	0.0	0.05	15.91	0.01	2.211	11.24	0.30	1.5	98.5	0.0	0.07	0.75	0.82	3.11	2.6	0.004	0.65	0.0	0.05	16.54	0.01	2.050	9.13	2.83	1.5	98.5	0.0	0.44	1.95	0.75	0.85	3.22	24075	3024	9	0	0	0	0	logfile
✔	6LAR	0862	2023-04-26	2019-11-13	3.7	4.08	—	4.0	0.007	0.99	0.0	0.05	15.43	0.01	1.858	20.21	5.47	13.2	86.4	0.4	-4.82	0.65	0.76	0.98	4.0	0.003	0.78	0.0	0.04	15.86	0.00	2.160	12.49	0.43	8.6	91.4	0.0	-0.58	1.21	0.64	0.76	0.54	22448	3020	10	0	0	0	0	logfile
✔	7RU4	24696	2023-04-20	2021-08-16	3.3	3.64	3.27	3.4	0.023	1.89	0.0	0.11	9.85	0.01	2.362	0.60	0.55	3.1	96.9	0.0	0.06	0.75	0.80	3.98	3.4	0.003	0.75	0.0	0.05	15.37	0.00	2.181	10.06	0.27	6.0	94.0	0.0	-0.88	1.41	0.76	0.82	2.84	3382	428	5	0	4	0	0	logfile
✔	8F74	28894	2023-04-23	2022-11-18	3.1	3.55	3.19	3.5	0.005	0.72	0.0	0.04	16.78	0.00	2.206	5.81	0.06	2.6	97.4	0.0	0.91	0.63	0.80	1.72	3.5	0.003	0.51	0.0	0.04	16.27	0.00	2.212	8.13	0.29	2.6	97.4	0.0	1.88	1.14	0.65	0.82	1.37	16008	1881	18	0	15	6	0	logfile
✔	7RU1	24693	2023-04-27	2021-08-16	2.8	3.31	2.92	3.2	0.021	1.78	0.0	0.12	10.24	0.01	2.402	0.79	0.00	3.0	97.0	0.0	0.58	0.80	0.82	5.05	3.2	0.003	0.62	0.0	0.04	14.60	0.00	2.178	5.09	1.56	3.5	96.4	0.1	0.18	1.21	0.78	0.82	4.40	26493	3294	18	0	54	0	0	logfile
✔	8BA0	15937	2023-04-23	2022-10-10	3.68	3.40	3.98	2.4	0.007	0.83	0.0	0.84	14.16	0.01	1.823	11.05	0.00	8.0	92.0	0.0	-1.67	0.76	0.79	1.68	2.4	0.007	1.40	0.0	0.26	15.92	0.00	2.057	14.40	0.16	5.6	94.4	0.0	-0.14	1.16	0.76	0.79	1.23	65912	8136	56	0	22	0	0	logfile
✔	8GWF	34311	2023-04-26	2022-09-17	3.39	3.99	3.49	3.6	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.84	0.76	1.55	3.6	0.003	0.66	0.0	0.04	17.00	0.00	2.124	13.47	0.31	7.9	91.9	0.2	-1.35	1.46	0.86	0.83	1.64	21955	2668	13	52	9	1	0	logfile

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