Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FHL	4259	2023-08-13	2018-01-15	3.3	3.44	3.10	3.4	0.018	1.59	0.0	0.08	13.07	0.02	1.986	2.06	0.00	5.5	92.3	2.2	-1.84	0.70	0.85	3.43	3.4	0.003	0.67	0.0	0.04	16.00	0.00	1.980	10.45	0.38	1.9	98.1	0.0	-0.15	1.32	0.67	0.85	2.58	14665	1855	10	0	15	0	0	logfile
✔	8EW2	28640	2023-08-11	2022-10-21	3.1	3.17	3.24	3.1	0.004	0.63	0.0	0.04	17.05	0.00	2.188	13.54	0.46	3.4	96.6	0.0	0.64	0.78	0.88	2.37	3.1	0.003	0.56	0.0	0.04	17.38	0.00	2.159	12.10	0.18	3.1	96.9	0.0	1.12	0.37	0.78	0.88	2.01	10340	1356	4	0	0	0	0	logfile
✔	7WUi	32836	2023-08-13	2022-02-08	3.1	2.72	—	3.1	0.007	1.11	0.0	0.07	13.96	0.01	2.221	25.88	0.29	4.3	95.7	0.0	-2.70	0.53	0.65	2.45	3.1	0.003	0.63	0.0	0.04	15.87	0.00	2.068	23.29	0.77	4.1	95.9	0.0	-1.08	1.15	0.56	0.73	2.31	9666	1225	7	0	0	0	0	logfile
✔	7AHH	11786	2023-08-12	2020-09-24	3.5	3.59	3.55	3.6	0.010	1.16	0.0	0.07	13.99	0.00	2.213	14.34	0.23	7.6	92.4	0.0	-1.56	0.70	0.79	2.43	3.6	0.003	0.70	0.0	0.04	15.62	0.00	2.150	8.31	0.45	3.7	96.3	0.0	0.75	0.66	0.70	0.81	2.18	12125	1562	7	0	4	0	0	logfile
✔	6XLK	22246	2023-08-09	2020-06-28	3.3	3.63	—	3.5	0.008	0.76	0.0	0.05	20.17	0.00	2.216	5.71	0.41	0.9	99.1	0.0	-2.26	0.78	0.84	2.91	3.5	0.003	0.53	0.0	0.04	20.59	0.00	2.270	8.09	0.41	1.5	98.5	0.0	0.58	0.43	0.79	0.85	2.20	5456	536	6	46	4	0	0	logfile
✔	8EG8	28110	2023-08-19	2022-09-12	3.3	3.16	3.27	3.2	0.005	0.60	0.0	0.04	14.89	0.00	1.992	5.42	0.00	5.5	94.5	0.0	-0.29	0.71	0.82	2.30	3.2	0.004	0.58	0.0	0.04	16.70	0.00	2.005	8.56	0.33	5.6	94.4	0.0	-0.01	0.35	0.72	0.85	2.01	26553	3219	10	67	5	0	0	logfile
✔	6LQJ	0947	2023-08-14	2020-01-13	3.24	3.40	3.06	3.4	0.007	0.74	0.0	0.05	16.29	0.00	2.216	11.27	5.34	9.1	90.9	0.0	-3.28	0.74	0.84	2.87	3.4	0.003	0.62	0.0	0.05	16.76	0.00	2.169	12.21	0.38	8.5	91.5	0.0	-0.64	0.46	0.73	0.85	2.73	17100	2214	18	0	0	0	0	logfile
✔	6E1M	8957	2023-08-11	2018-07-10	3.3	3.50	3.31	3.6	0.018	1.61	0.0	0.08	14.91	0.01	1.976	8.65	0.11	8.4	91.5	0.1	-5.95	0.50	0.74	3.94	3.6	0.003	0.75	0.0	0.04	15.56	0.00	2.157	11.12	0.78	4.7	95.3	0.0	-0.40	0.75	0.55	0.77	2.40	8913	1072	6	0	23	2	0	logfile
✔	6XLE	22241	2023-08-12	2020-06-28	2.74	2.85	—	2.8	0.003	0.49	0.0	0.04	10.00	0.00	2.095	5.07	0.07	1.4	98.6	0.0	-3.54	0.75	0.80	3.20	2.8	0.004	0.59	0.0	0.04	16.50	0.00	1.975	8.46	0.82	2.7	97.3	0.0	-0.38	1.32	0.79	0.87	3.32	12240	1502	6	0	6	0	0	logfile
✔	6oiS	20080	2023-08-12	2019-04-09	3.6	3.71	—	3.6	0.009	1.05	0.0	0.06	10.80	0.01	2.315	5.76	0.68	4.2	95.8	0.0	-2.46	0.78	0.81	3.12	3.6	0.003	0.62	0.0	0.04	14.52	0.00	2.109	8.55	0.34	2.7	97.3	0.0	1.42	2.26	0.79	0.83	2.60	10732	1365	6	0	0	0	0	logfile
✔	7DSQ	30841	2023-08-10	2020-12-31	3.4	3.49	—	3.5	0.010	1.19	0.0	0.49	15.84	0.01	2.292	5.94	0.89	8.8	90.3	0.9	-4.52	0.64	0.82	1.74	3.5	0.003	1.23	0.0	0.11	16.06	0.00	2.235	6.80	0.63	8.1	91.9	0.0	0.17	1.23	0.65	0.83	1.47	7507	935	7	0	11	15	0	logfile
✔	7CQK	30442	2023-08-10	2020-08-11	3.3	3.38	—	3.3	0.011	1.34	3.0	0.08	19.23	0.01	0.963	29.97	21.66	11.3	87.7	1.0	-5.35	0.70	0.84	2.60	3.3	0.002	0.67	0.0	0.04	16.86	0.00	2.227	5.71	0.11	4.8	95.1	0.1	-1.06	2.02	0.71	0.86	2.18	8859	1116	7	0	2	0	0	logfile
✔	7LYB	23591	2023-08-16	2021-03-06	3.28	3.92	3.31	3.6	0.006	0.73	0.0	0.04	26.17	0.00	1.330	8.91	0.00	4.7	95.3	0.0	-1.02	0.88	0.86	1.97	3.6	0.005	0.67	0.0	0.04	26.34	0.00	2.097	10.25	0.00	3.4	96.6	0.0	1.89	1.19	0.88	0.88	1.32	14699	1096	15	293	4	0	0	logfile
✔	7FFN	31569	2023-08-10	2021-07-23	3.0	3.15	—	3.1	0.007	0.95	0.0	0.06	9.73	0.01	1.924	5.72	0.53	6.6	93.3	0.1	-3.00	0.39	0.80	3.34	3.1	0.004	0.70	0.0	0.05	14.57	0.01	2.170	8.25	2.55	5.8	94.2	0.0	-0.56	2.02	0.41	0.88	3.17	8589	1112	6	0	1	0	0	logfile
✔	6oUL	20203	2023-08-21	2019-05-04	3.4	3.56	—	3.6	0.015	1.20	0.0	0.06	14.87	0.01	2.011	34.20	0.31	12.2	87.6	0.3	-4.17	0.68	0.79	2.67	3.6	0.004	0.66	0.0	0.04	17.76	0.00	2.102	10.89	0.28	6.1	93.9	0.1	-0.58	1.97	0.69	0.83	1.31	31927	3751	12	117	6	0	0	logfile
✔	6oMM	20126	2023-08-11	2019-04-19	3.17	3.31	—	3.3	0.005	0.93	0.0	0.06	9.85	0.01	2.222	4.84	0.00	3.1	96.9	0.0	-2.94	0.67	0.83	3.35	3.3	0.003	0.63	0.0	0.04	14.62	0.00	2.152	14.15	0.41	2.1	97.9	0.0	0.09	1.31	0.65	0.83	2.74	9134	1142	7	0	8	0	0	logfile
✔	6V5B	21051	2023-08-12	2019-12-04	3.7	4.57	—	4.4	0.007	1.10	1.0	0.06	16.38	0.01	1.972	10.05	0.50	11.7	88.2	0.2	-4.89	0.78	0.78	1.78	4.4	0.003	0.79	0.0	0.04	17.12	0.00	2.061	16.15	0.17	9.5	90.5	0.0	-1.87	1.35	0.79	0.79	1.42	12563	1341	5	78	3	0	0	logfile
✔	6NUS	0521	2023-08-10	2019-02-01	3.5	3.62	3.47	3.6	0.016	1.57	0.0	0.09	9.78	0.01	2.301	0.99	0.14	1.2	98.8	0.0	0.30	0.56	0.68	2.07	3.6	0.003	0.64	0.0	0.04	14.69	0.00	2.202	11.22	0.69	2.6	97.4	0.0	0.73	1.87	0.53	0.71	0.89	6632	827	3	0	2	0	0	logfile
✔	6YKP	10829	2023-08-11	2020-04-06	2.98	3.28	3.05	3.3	0.014	1.23	0.0	0.07	10.75	0.01	2.350	2.77	0.09	3.0	97.0	0.1	-6.56	0.59	0.85	4.85	3.3	0.003	0.72	0.0	0.04	15.78	0.00	2.237	7.57	1.67	2.1	97.8	0.1	0.88	1.11	0.60	0.86	2.92	10190	1326	9	0	0	7	0	logfile
✔	5BKG	9404	2023-08-13	2021-03-19	3.8	3.93	—	4.0	0.004	0.58	0.0	0.04	12.34	0.00	2.044	8.32	0.21	6.2	93.8	0.0	-3.60	0.68	0.82	2.85	4.0	0.003	0.70	0.0	0.05	15.62	0.00	2.210	11.60	0.27	4.4	95.6	0.0	-0.58	0.64	0.70	0.84	2.09	13509	1689	10	0	9	0	0	logfile

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