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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6RJU | 4906 | 2023-02-16 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 9.8 | 0.003 | 0.63 | 0.0 | 0.03 | 15.97 | 0.00 | 2.424 | 6.03 | 0.00 | 6.2 | 93.8 | 0.0 | -0.13 | 1.31 | 0.27 | 0.05 | 0.48 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7ABK | 11698 | 2023-02-16 | 2020-09-07 | 3.6 | 4.10 | 3.49 | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 16.30 | 0.00 | 2.315 | 5.67 | 1.23 | 1.5 | 98.5 | 0.0 | 0.91 | 0.28 | 0.87 | 1.10 | 3.9 | 0.004 | 0.67 | 0.0 | 0.03 | 19.79 | 0.00 | 2.278 | 6.30 | 2.47 | 2.1 | 97.9 | 0.0 | 4.42 | 1.32 | 0.28 | 0.86 | 1.35 | 1574 | 196 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiU | 26553 | 2023-02-16 | 2022-03-29 | 2.8 | 3.11 | 2.72 | 3.1 | 0.004 | 0.62 | 0.0 | 0.04 | 13.60 | 0.00 | 2.356 | 3.35 | 0.00 | 4.8 | 95.2 | 0.0 | -2.09 | 0.28 | 0.82 | 1.99 | 3.1 | 0.004 | 0.96 | 0.0 | 0.04 | 17.04 | 0.00 | 2.228 | 11.74 | 1.67 | 4.8 | 95.2 | 0.0 | -2.17 | 1.37 | 0.28 | 0.89 | 2.33 | 607 | 85 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U15 | 26278 | 2023-02-18 | 2022-02-19 | 3.0 | 3.14 | — | 3.3 | 0.006 | 1.18 | 0.0 | 0.12 | 17.37 | 0.01 | 1.886 | 12.16 | 3.44 | 3.8 | 96.2 | 0.0 | -6.51 | 0.26 | 0.64 | 1.55 | 3.2 | 0.004 | 0.77 | 0.0 | 0.11 | 17.01 | 0.00 | 1.892 | 13.92 | 4.76 | 18.8 | 81.2 | 0.0 | -5.30 | 1.49 | 0.28 | 0.71 | 2.28 | 6684 | 405 | 6 | 0 | 12 | 0 | 3255 | logfile |
✔ | 6FLQ | 4275 | 2023-02-27 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 14.73 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.8 | 0.009 | 1.33 | 0.0 | 0.06 | 17.55 | 0.01 | 1.844 | 30.47 | 0.70 | 13.4 | 86.4 | 0.2 | -2.72 | 2.16 | 0.28 | 0.24 | 0.30 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 7P3R | 13185 | 2023-02-18 | 2021-07-08 | 3.65 | 3.16 | 3.57 | 3.5 | 0.006 | 0.81 | 1.0 | 0.05 | 13.66 | 0.01 | 2.306 | 1.88 | 0.28 | 2.7 | 97.3 | 0.0 | -3.67 | 0.30 | 0.70 | 1.05 | 3.5 | 0.004 | 0.59 | 0.0 | 0.04 | 14.62 | 0.00 | 2.160 | 5.04 | 0.28 | 2.3 | 97.7 | 0.0 | 3.53 | 0.58 | 0.29 | 0.64 | 1.05 | 7738 | 1338 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HRE | 0259 | 2023-02-17 | 2018-09-26 | 3.2 | 2.74 | 2.87 | 3.3 | 0.019 | 1.47 | 0.0 | 0.11 | 13.34 | 0.01 | 2.474 | 6.01 | 0.00 | 12.0 | 88.0 | 0.0 | -4.17 | 0.32 | 0.80 | 4.40 | 2.8 | 0.005 | 0.88 | 0.0 | 0.05 | 17.64 | 0.00 | 2.152 | 9.22 | 0.25 | 8.4 | 91.6 | 0.0 | -3.58 | 0.82 | 0.29 | 0.78 | 3.78 | 3522 | 462 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2023-02-22 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.91 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.5 | 0.003 | 0.75 | 0.0 | 0.04 | 14.67 | 0.00 | 1.976 | 13.04 | 0.15 | 5.4 | 94.5 | 0.0 | -0.66 | 1.65 | 0.30 | 0.18 | 0.61 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 7QL4 | 14063 | 2023-02-18 | 2021-12-19 | 3.2 | 3.36 | 2.99 | 3.5 | 0.011 | 1.86 | 0.0 | 0.10 | 12.28 | 0.01 | 2.511 | 0.28 | 0.00 | 8.3 | 91.7 | 0.0 | -1.77 | 0.26 | 0.51 | 0.51 | 3.4 | 0.003 | 0.61 | 0.0 | 0.05 | 14.84 | 0.00 | 2.063 | 8.06 | 0.25 | 2.3 | 97.7 | 0.0 | -1.63 | 2.14 | 0.30 | 0.72 | 3.63 | 7074 | 456 | 6 | 0 | 0 | 0 | 3606 | logfile |
✔ | 7U11 | 26274 | 2023-02-17 | 2022-02-19 | 3.2 | 2.77 | — | 3.4 | 0.004 | 0.67 | 0.0 | 0.06 | 16.16 | 0.00 | 2.186 | 14.68 | 2.36 | 6.0 | 94.0 | 0.0 | -2.79 | 0.29 | 0.64 | 3.31 | 3.4 | 0.005 | 0.78 | 0.0 | 0.06 | 17.42 | 0.00 | 2.051 | 11.19 | 0.26 | 10.0 | 90.0 | 0.0 | -3.34 | 0.76 | 0.30 | 0.68 | 3.39 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7WHP | 32507 | 2023-02-22 | 2021-12-31 | 3.7 | 3.28 | — | 3.3 | 0.004 | 0.62 | 0.0 | 0.04 | 14.19 | 0.01 | 2.209 | 8.40 | 0.00 | 2.9 | 97.0 | 0.0 | -0.85 | 0.30 | 0.77 | 2.67 | 3.3 | 0.004 | 0.60 | 0.0 | 0.05 | 16.37 | 0.00 | 2.068 | 9.96 | 0.37 | 4.2 | 95.7 | 0.0 | -0.75 | 1.54 | 0.30 | 0.78 | 2.57 | 17038 | 2114 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6QJH | 4563 | 2023-02-16 | 2019-01-24 | 3.3 | 3.70 | 2.77 | 3.6 | 0.012 | 1.21 | 3.0 | 0.10 | 14.39 | 0.01 | 2.673 | 1.49 | 1.96 | 7.0 | 93.0 | 0.0 | -3.22 | 0.36 | 0.83 | 2.97 | 3.6 | 0.003 | 0.65 | 0.0 | 0.05 | 15.68 | 0.00 | 2.258 | 4.48 | 0.00 | 2.3 | 97.7 | 0.0 | -2.63 | 1.57 | 0.30 | 0.77 | 2.79 | 1302 | 177 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WNZ | 32636 | 2023-02-19 | 2022-01-20 | 3.4 | 3.47 | — | 4.0 | 0.003 | 0.52 | 0.0 | 0.05 | 10.39 | 0.00 | 2.177 | 6.80 | 0.00 | 6.3 | 93.7 | 0.0 | -3.33 | 0.51 | 0.70 | 4.51 | 4.0 | 0.003 | 0.62 | 0.0 | 0.05 | 12.17 | 0.00 | 2.055 | 11.33 | 0.21 | 10.0 | 90.0 | 0.0 | -5.42 | 0.50 | 0.31 | 0.66 | 5.59 | 9300 | 650 | 10 | 0 | 0 | 0 | 4780 | logfile |
✔ | 3KTT | 5148 | 2023-02-17 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 2.1 | 0.005 | 1.24 | 0.0 | 0.05 | 17.17 | 0.01 | 2.010 | 31.44 | 0.49 | 9.2 | 89.6 | 1.2 | -2.49 | 2.03 | 0.31 | 0.42 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R4R | 4727 | 2023-02-17 | 2019-03-23 | 3.4 | 3.01 | 1.77 | 3.8 | 0.008 | 1.43 | 0.0 | 0.08 | 10.87 | 0.01 | 2.308 | 6.73 | 0.00 | 12.0 | 88.0 | 0.0 | -5.16 | 0.32 | 0.64 | 5.08 | 3.6 | 0.005 | 0.81 | 0.0 | 0.05 | 16.69 | 0.00 | 2.109 | 15.14 | 0.68 | 9.1 | 90.9 | 0.0 | -4.84 | 3.88 | 0.31 | 0.68 | 3.65 | 4312 | 539 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RTN | 24684 | 2023-02-17 | 2021-08-13 | 3.4 | 3.47 | — | 3.5 | 0.004 | 0.63 | 0.0 | 0.04 | 14.58 | 0.00 | 2.298 | 6.03 | 0.00 | 6.1 | 93.9 | 0.0 | 0.60 | 0.31 | 0.74 | 3.40 | 3.5 | 0.002 | 0.55 | 0.0 | 0.04 | 16.40 | 0.00 | 2.267 | 7.60 | 0.18 | 4.3 | 95.7 | 0.0 | 1.41 | 0.36 | 0.31 | 0.77 | 2.79 | 6018 | 810 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K32 | 9907 | 2023-02-23 | 2019-05-16 | 3.2 | 3.73 | — | 3.8 | 0.009 | 1.22 | 1.0 | 0.07 | 11.49 | 0.01 | 1.345 | 10.20 | 1.25 | 6.3 | 93.3 | 0.3 | -4.88 | 0.28 | 0.72 | 1.49 | 3.7 | 0.005 | 0.80 | 0.0 | 0.05 | 16.31 | 0.00 | 1.315 | 12.68 | 0.61 | 5.9 | 94.1 | 0.1 | -1.36 | 1.63 | 0.31 | 0.82 | 2.34 | 61364 | 7723 | 10 | 8 | 6 | 0 | 0 | logfile |
✔ | 7V49 | 31704 | 2023-02-16 | 2021-08-12 | 3.4 | 3.45 | — | 4.1 | 0.007 | 1.01 | 0.0 | 0.06 | 13.70 | 0.00 | 2.279 | 22.06 | 0.00 | 39.7 | 60.3 | 0.0 | -7.67 | 0.33 | 0.73 | 5.03 | 4.1 | 0.003 | 0.73 | 0.0 | 0.05 | 14.81 | 0.00 | 2.500 | 7.22 | 0.00 | 13.2 | 86.8 | 0.0 | -5.75 | 1.27 | 0.31 | 0.69 | 4.86 | 1221 | 180 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QKH | 14042 | 2023-02-17 | 2021-12-17 | 3.17 | 3.37 | 2.07 | 3.5 | 0.011 | 2.48 | 5.0 | 0.19 | 15.22 | 0.01 | 2.470 | 1.29 | 0.00 | 14.6 | 85.4 | 0.0 | -3.56 | 0.37 | 0.74 | 3.98 | 3.5 | 0.003 | 0.96 | 0.0 | 0.22 | 15.30 | 0.00 | 2.124 | 7.42 | 0.00 | 5.2 | 94.8 | 0.0 | -2.68 | 2.29 | 0.32 | 0.70 | 4.11 | 3105 | 204 | 6 | 0 | 0 | 0 | 1593 | logfile |
✔ | 6DLU | 7957 | 2023-02-20 | 2018-06-02 | 3.75 | 3.84 | — | 3.8 | 0.009 | 0.94 | 0.0 | 0.05 | 9.95 | 0.00 | 1.944 | 12.48 | 0.23 | 5.7 | 94.3 | 0.0 | -2.78 | 0.31 | 0.77 | 1.09 | 3.7 | 0.002 | 0.69 | 0.0 | 0.04 | 13.94 | 0.00 | 1.984 | 8.44 | 0.30 | 4.4 | 95.6 | 0.0 | 0.08 | 2.39 | 0.32 | 0.81 | 1.17 | 11991 | 1481 | 4 | 0 | 4 | 0 | 0 | logfile |