Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6K32	9907	2023-07-05	2019-05-16	3.2	3.73	—	3.8	0.009	1.22	1.0	0.07	11.49	0.01	1.345	10.22	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.004	0.78	0.0	0.05	16.38	0.00	1.254	13.10	0.77	5.7	94.2	0.0	-1.38	1.36	0.31	0.82	2.33	61364	7723	10	8	6	0	0	logfile
✔	6Qi8	4552	2023-07-07	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.85	0.0	0.04	17.56	0.00	2.143	15.66	0.19	7.7	92.3	0.0	-2.16	1.53	0.32	0.22	0.51	14789	1907	12	0	6	0	0	logfile
✔	5GAK	3227	2023-07-10	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.9	0.003	0.72	0.0	0.04	18.78	0.00	2.007	19.48	0.38	8.0	91.6	0.4	-2.15	1.90	0.32	0.21	0.08	128975	6434	50	3597	234	0	0	logfile
✔	8A1S	15086	2023-07-08	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	10.01	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.5	0.004	0.76	0.0	0.05	12.92	0.01	2.069	15.85	0.36	4.4	95.5	0.2	-1.00	1.62	0.32	0.20	—	67152	8528	32	0	32	0	0	logfile
✔	7ZFW	14704	2023-07-06	2022-04-01	3.8	4.62	3.46	3.0	0.006	0.83	0.0	0.05	17.92	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.009	0.90	0.0	0.04	20.26	0.01	1.952	38.01	0.00	0.0	0.0	0.0	—	2.55	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	7RTo	24685	2023-07-04	2021-08-13	3.8	3.83	—	3.8	0.004	0.82	0.0	0.05	14.32	0.00	2.200	8.55	0.16	5.6	94.4	0.0	1.09	0.32	0.76	2.41	3.8	0.002	0.64	0.0	0.04	16.57	0.00	2.236	7.92	0.16	5.3	94.7	0.0	1.56	0.51	0.33	0.78	1.86	6607	888	3	0	0	0	0	logfile
✔	7XMX	33307	2023-07-13	2022-04-27	3.62	3.63	3.44	22.0	0.012	1.30	7.0	0.09	12.55	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	20.0	0.003	0.70	0.0	0.04	14.46	0.00	2.060	11.54	0.19	5.7	94.2	0.1	-1.12	1.15	0.33	0.16	0.18	28727	3700	12	0	24	0	0	logfile
✔	8H9G	34566	2023-07-03	2022-10-25	2.95	3.31	3.17	3.3	0.008	0.77	0.0	0.05	14.93	0.01	2.278	10.74	0.00	5.8	94.2	0.0	-2.39	0.34	0.81	2.01	3.3	0.003	0.64	0.0	0.04	17.92	0.00	2.128	8.05	3.38	4.1	95.9	0.0	2.24	0.91	0.33	0.81	1.89	3381	421	3	0	0	0	0	logfile
✔	8DWJ	27756	2023-07-03	2022-08-01	3.9	3.19	3.82	3.1	0.005	1.05	0.0	0.06	15.49	0.01	2.218	13.71	0.33	5.9	94.1	0.0	-2.71	0.33	0.57	0.88	3.0	0.004	0.74	0.0	0.05	17.49	0.01	2.206	22.07	0.66	5.6	94.4	0.0	-1.64	2.56	0.33	0.58	0.80	3043	339	3	11	2	0	0	logfile
✔	5M3L	3434	2023-07-09	2016-10-15	3.8	2.49	—	3.8	0.013	1.53	7.0	0.08	12.48	0.01	1.442	10.31	0.59	7.4	91.5	1.1	-4.86	0.32	0.76	2.04	3.6	0.004	0.76	0.0	0.04	16.98	0.00	2.103	11.84	1.08	5.3	94.5	0.2	-0.26	0.89	0.34	0.75	1.29	19007	2394	27	0	12	0	0	logfile
✔	6YBV	10774	2023-07-04	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	17.69	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.004	0.84	0.0	0.05	18.35	0.00	2.023	19.92	0.80	11.9	87.9	0.1	-2.54	3.35	0.34	0.59	0.71	6731	769	5	78	0	0	0	logfile
✔	7PAG	13269	2023-07-03	2021-07-29	4.0	4.22	—	4.1	0.005	0.75	0.0	0.05	13.86	0.01	2.177	12.66	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.004	1.05	0.0	0.05	16.63	0.00	2.144	20.38	0.23	10.5	89.5	0.0	-3.28	1.36	0.34	0.68	—	4040	509	1	0	4	0	0	logfile
✔	8GWB	34308	2023-07-10	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.74	0.0	0.04	16.77	0.00	2.117	17.33	2.69	7.5	92.4	0.1	-1.54	1.60	0.34	0.15	0.46	21879	2655	16	54	10	7	0	logfile
✔	7TUi	26132	2023-07-13	2022-02-02	2.66	2.87	—	2.9	0.005	0.87	0.0	0.05	12.34	0.01	2.034	16.42	0.00	6.8	92.8	0.4	-2.00	0.35	0.69	2.57	2.9	0.003	0.68	0.0	0.04	15.92	0.00	2.085	14.18	1.33	6.1	93.6	0.3	-1.06	1.19	0.34	0.73	2.39	27380	3466	2	0	1	0	0	logfile
✔	7T4F	25675	2023-07-04	2021-12-09	2.7	3.13	2.69	3.1	0.004	0.70	0.0	0.05	14.61	0.00	2.228	4.75	2.44	0.3	99.7	0.0	0.54	0.33	0.71	4.04	3.1	0.003	0.52	0.0	0.05	15.29	0.00	2.217	4.40	1.41	0.6	99.4	0.0	0.30	0.37	0.34	0.80	4.44	7224	980	4	0	0	0	0	logfile
✔	6XTB	10618	2023-07-03	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	7ELL	31184	2023-07-05	2021-04-12	3.8	4.24	—	3.8	0.006	0.86	1.0	0.05	14.83	0.01	1.176	17.74	0.62	8.9	90.9	0.2	-2.13	0.35	0.86	1.77	3.8	0.005	0.77	0.0	0.05	15.99	0.00	2.030	12.91	0.40	4.8	95.1	0.1	-0.02	1.31	0.34	0.88	1.94	60584	7917	31	0	10	0	0	logfile
✔	6ZMS	11300	2023-07-06	2020-07-03	3.4	3.78	—	3.8	0.019	1.98	3.0	0.10	14.13	0.01	2.427	0.32	2.12	5.6	91.4	3.0	-2.88	0.40	0.72	1.84	3.7	0.004	0.64	0.0	0.04	15.70	0.00	2.031	5.57	0.14	6.2	93.4	0.4	-1.93	1.76	0.35	0.84	3.57	12570	818	4	0	0	0	6173	logfile
✔	7JQQ	22441	2023-07-13	2020-08-11	4.1	4.43	—	4.3	0.004	0.88	0.0	0.04	23.12	0.01	1.379	26.31	0.00	9.7	90.3	0.0	-2.31	0.35	0.57	—	4.3	0.003	0.78	0.0	0.04	22.83	0.00	1.952	22.64	0.00	9.6	90.4	0.0	-2.18	0.49	0.35	0.58	—	28416	1635	15	705	6	0	0	logfile
✔	6oEE	20020	2023-07-13	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	3.8	0.003	0.79	0.0	0.04	17.76	0.00	2.249	11.89	0.67	12.7	87.3	0.0	-1.07	0.97	0.35	0.75	0.82	28000	3402	14	0	0	0	0	logfile

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