Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RJU	4906	2023-02-16	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7ABK	11698	2023-02-16	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.004	0.67	0.0	0.03	19.79	0.00	2.278	6.30	2.47	2.1	97.9	0.0	4.42	1.32	0.28	0.86	1.35	1574	196	1	0	0	0	0	logfile
✔	7UiU	26553	2023-02-16	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.1	0.004	0.96	0.0	0.04	17.04	0.00	2.228	11.74	1.67	4.8	95.2	0.0	-2.17	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	7U15	26278	2023-02-18	2022-02-19	3.0	3.14	—	3.3	0.006	1.18	0.0	0.12	17.37	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.004	0.77	0.0	0.11	17.01	0.00	1.892	13.92	4.76	18.8	81.2	0.0	-5.30	1.49	0.28	0.71	2.28	6684	405	6	0	12	0	3255	logfile
✔	6FLQ	4275	2023-02-27	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.8	0.009	1.33	0.0	0.06	17.55	0.01	1.844	30.47	0.70	13.4	86.4	0.2	-2.72	2.16	0.28	0.24	0.30	30201	3868	10	91	3	0	0	logfile
✔	7P3R	13185	2023-02-18	2021-07-08	3.65	3.16	3.57	3.5	0.006	0.81	1.0	0.05	13.66	0.01	2.306	1.88	0.28	2.7	97.3	0.0	-3.67	0.30	0.70	1.05	3.5	0.004	0.59	0.0	0.04	14.62	0.00	2.160	5.04	0.28	2.3	97.7	0.0	3.53	0.58	0.29	0.64	1.05	7738	1338	4	0	0	0	0	logfile
✔	6HRE	0259	2023-02-17	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.01	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	2.8	0.005	0.88	0.0	0.05	17.64	0.00	2.152	9.22	0.25	8.4	91.6	0.0	-3.58	0.82	0.29	0.78	3.78	3522	462	6	0	0	0	0	logfile
✔	6Z5U	11082	2023-02-22	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.003	0.75	0.0	0.04	14.67	0.00	1.976	13.04	0.15	5.4	94.5	0.0	-0.66	1.65	0.30	0.18	0.61	17880	2334	14	0	4	0	0	logfile
✔	7QL4	14063	2023-02-18	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.003	0.61	0.0	0.05	14.84	0.00	2.063	8.06	0.25	2.3	97.7	0.0	-1.63	2.14	0.30	0.72	3.63	7074	456	6	0	0	0	3606	logfile
✔	7U11	26274	2023-02-17	2022-02-19	3.2	2.77	—	3.4	0.004	0.67	0.0	0.06	16.16	0.00	2.186	14.68	2.36	6.0	94.0	0.0	-2.79	0.29	0.64	3.31	3.4	0.005	0.78	0.0	0.06	17.42	0.00	2.051	11.19	0.26	10.0	90.0	0.0	-3.34	0.76	0.30	0.68	3.39	3456	405	6	0	12	0	0	logfile
✔	7WHP	32507	2023-02-22	2021-12-31	3.7	3.28	—	3.3	0.004	0.62	0.0	0.04	14.19	0.01	2.209	8.40	0.00	2.9	97.0	0.0	-0.85	0.30	0.77	2.67	3.3	0.004	0.60	0.0	0.05	16.37	0.00	2.068	9.96	0.37	4.2	95.7	0.0	-0.75	1.54	0.30	0.78	2.57	17038	2114	4	0	6	0	0	logfile
✔	6QJH	4563	2023-02-16	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.65	0.0	0.05	15.68	0.00	2.258	4.48	0.00	2.3	97.7	0.0	-2.63	1.57	0.30	0.77	2.79	1302	177	3	0	0	0	0	logfile
✔	7WNZ	32636	2023-02-19	2022-01-20	3.4	3.47	—	4.0	0.003	0.52	0.0	0.05	10.39	0.00	2.177	6.80	0.00	6.3	93.7	0.0	-3.33	0.51	0.70	4.51	4.0	0.003	0.62	0.0	0.05	12.17	0.00	2.055	11.33	0.21	10.0	90.0	0.0	-5.42	0.50	0.31	0.66	5.59	9300	650	10	0	0	0	4780	logfile
✔	3KTT	5148	2023-02-17	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.005	1.24	0.0	0.05	17.17	0.01	2.010	31.44	0.49	9.2	89.6	1.2	-2.49	2.03	0.31	0.42	—	3855	513	1	0	0	0	0	logfile
✔	6R4R	4727	2023-02-17	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.6	0.005	0.81	0.0	0.05	16.69	0.00	2.109	15.14	0.68	9.1	90.9	0.0	-4.84	3.88	0.31	0.68	3.65	4312	539	7	0	0	0	0	logfile
✔	7RTN	24684	2023-02-17	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.002	0.55	0.0	0.04	16.40	0.00	2.267	7.60	0.18	4.3	95.7	0.0	1.41	0.36	0.31	0.77	2.79	6018	810	3	0	0	0	0	logfile
✔	6K32	9907	2023-02-23	2019-05-16	3.2	3.73	—	3.8	0.009	1.22	1.0	0.07	11.49	0.01	1.345	10.20	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.005	0.80	0.0	0.05	16.31	0.00	1.315	12.68	0.61	5.9	94.1	0.1	-1.36	1.63	0.31	0.82	2.34	61364	7723	10	8	6	0	0	logfile
✔	7V49	31704	2023-02-16	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.73	0.0	0.05	14.81	0.00	2.500	7.22	0.00	13.2	86.8	0.0	-5.75	1.27	0.31	0.69	4.86	1221	180	3	0	0	0	0	logfile
✔	7QKH	14042	2023-02-17	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	1.29	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	3.5	0.003	0.96	0.0	0.22	15.30	0.00	2.124	7.42	0.00	5.2	94.8	0.0	-2.68	2.29	0.32	0.70	4.11	3105	204	6	0	0	0	1593	logfile
✔	6DLU	7957	2023-02-20	2018-06-02	3.75	3.84	—	3.8	0.009	0.94	0.0	0.05	9.95	0.00	1.944	12.48	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.002	0.69	0.0	0.04	13.94	0.00	1.984	8.44	0.30	4.4	95.6	0.0	0.08	2.39	0.32	0.81	1.17	11991	1481	4	0	4	0	0	logfile

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