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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6K32 | 9907 | 2023-07-05 | 2019-05-16 | 3.2 | 3.73 | — | 3.8 | 0.009 | 1.22 | 1.0 | 0.07 | 11.49 | 0.01 | 1.345 | 10.22 | 1.25 | 6.3 | 93.3 | 0.3 | -4.88 | 0.28 | 0.72 | 1.49 | 3.7 | 0.004 | 0.78 | 0.0 | 0.05 | 16.38 | 0.00 | 1.254 | 13.10 | 0.77 | 5.7 | 94.2 | 0.0 | -1.38 | 1.36 | 0.31 | 0.82 | 2.33 | 61364 | 7723 | 10 | 8 | 6 | 0 | 0 | logfile |
✔ | 6Qi8 | 4552 | 2023-07-07 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.27 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | 9.9 | 0.003 | 0.85 | 0.0 | 0.04 | 17.56 | 0.00 | 2.143 | 15.66 | 0.19 | 7.7 | 92.3 | 0.0 | -2.16 | 1.53 | 0.32 | 0.22 | 0.51 | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2023-07-10 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 20.85 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 18.78 | 0.00 | 2.007 | 19.48 | 0.38 | 8.0 | 91.6 | 0.4 | -2.15 | 1.90 | 0.32 | 0.21 | 0.08 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2023-07-08 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 10.01 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 12.92 | 0.01 | 2.069 | 15.85 | 0.36 | 4.4 | 95.5 | 0.2 | -1.00 | 1.62 | 0.32 | 0.20 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 7ZFW | 14704 | 2023-07-06 | 2022-04-01 | 3.8 | 4.62 | 3.46 | 3.0 | 0.006 | 0.83 | 0.0 | 0.05 | 17.92 | 0.03 | 2.266 | 2.77 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.32 | 0.81 | — | 3.0 | 0.009 | 0.90 | 0.0 | 0.04 | 20.26 | 0.01 | 1.952 | 38.01 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.55 | 0.33 | 0.85 | — | 13188 | 0 | 1 | 615 | 0 | 0 | 0 | logfile |
✔ | 7RTo | 24685 | 2023-07-04 | 2021-08-13 | 3.8 | 3.83 | — | 3.8 | 0.004 | 0.82 | 0.0 | 0.05 | 14.32 | 0.00 | 2.200 | 8.55 | 0.16 | 5.6 | 94.4 | 0.0 | 1.09 | 0.32 | 0.76 | 2.41 | 3.8 | 0.002 | 0.64 | 0.0 | 0.04 | 16.57 | 0.00 | 2.236 | 7.92 | 0.16 | 5.3 | 94.7 | 0.0 | 1.56 | 0.51 | 0.33 | 0.78 | 1.86 | 6607 | 888 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XMX | 33307 | 2023-07-13 | 2022-04-27 | 3.62 | 3.63 | 3.44 | 22.0 | 0.012 | 1.30 | 7.0 | 0.09 | 12.55 | 0.01 | 1.407 | 4.82 | 1.34 | 6.6 | 93.3 | 0.1 | -0.95 | 0.29 | 0.01 | 0.23 | 20.0 | 0.003 | 0.70 | 0.0 | 0.04 | 14.46 | 0.00 | 2.060 | 11.54 | 0.19 | 5.7 | 94.2 | 0.1 | -1.12 | 1.15 | 0.33 | 0.16 | 0.18 | 28727 | 3700 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 8H9G | 34566 | 2023-07-03 | 2022-10-25 | 2.95 | 3.31 | 3.17 | 3.3 | 0.008 | 0.77 | 0.0 | 0.05 | 14.93 | 0.01 | 2.278 | 10.74 | 0.00 | 5.8 | 94.2 | 0.0 | -2.39 | 0.34 | 0.81 | 2.01 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 17.92 | 0.00 | 2.128 | 8.05 | 3.38 | 4.1 | 95.9 | 0.0 | 2.24 | 0.91 | 0.33 | 0.81 | 1.89 | 3381 | 421 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DWJ | 27756 | 2023-07-03 | 2022-08-01 | 3.9 | 3.19 | 3.82 | 3.1 | 0.005 | 1.05 | 0.0 | 0.06 | 15.49 | 0.01 | 2.218 | 13.71 | 0.33 | 5.9 | 94.1 | 0.0 | -2.71 | 0.33 | 0.57 | 0.88 | 3.0 | 0.004 | 0.74 | 0.0 | 0.05 | 17.49 | 0.01 | 2.206 | 22.07 | 0.66 | 5.6 | 94.4 | 0.0 | -1.64 | 2.56 | 0.33 | 0.58 | 0.80 | 3043 | 339 | 3 | 11 | 2 | 0 | 0 | logfile |
✔ | 5M3L | 3434 | 2023-07-09 | 2016-10-15 | 3.8 | 2.49 | — | 3.8 | 0.013 | 1.53 | 7.0 | 0.08 | 12.48 | 0.01 | 1.442 | 10.31 | 0.59 | 7.4 | 91.5 | 1.1 | -4.86 | 0.32 | 0.76 | 2.04 | 3.6 | 0.004 | 0.76 | 0.0 | 0.04 | 16.98 | 0.00 | 2.103 | 11.84 | 1.08 | 5.3 | 94.5 | 0.2 | -0.26 | 0.89 | 0.34 | 0.75 | 1.29 | 19007 | 2394 | 27 | 0 | 12 | 0 | 0 | logfile |
✔ | 6YBV | 10774 | 2023-07-04 | 2020-03-17 | 3.8 | 3.86 | 4.60 | 3.6 | 0.008 | 1.47 | 0.0 | 0.07 | 17.69 | 0.01 | 2.202 | 9.58 | 6.67 | 6.1 | 93.4 | 0.5 | -2.26 | 0.34 | 0.56 | 1.26 | 3.6 | 0.004 | 0.84 | 0.0 | 0.05 | 18.35 | 0.00 | 2.023 | 19.92 | 0.80 | 11.9 | 87.9 | 0.1 | -2.54 | 3.35 | 0.34 | 0.59 | 0.71 | 6731 | 769 | 5 | 78 | 0 | 0 | 0 | logfile |
✔ | 7PAG | 13269 | 2023-07-03 | 2021-07-29 | 4.0 | 4.22 | — | 4.1 | 0.005 | 0.75 | 0.0 | 0.05 | 13.86 | 0.01 | 2.177 | 12.66 | 0.00 | 6.3 | 93.7 | 0.0 | -1.70 | 0.30 | 0.60 | — | 4.2 | 0.004 | 1.05 | 0.0 | 0.05 | 16.63 | 0.00 | 2.144 | 20.38 | 0.23 | 10.5 | 89.5 | 0.0 | -3.28 | 1.36 | 0.34 | 0.68 | — | 4040 | 509 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 8GWB | 34308 | 2023-07-10 | 2022-09-16 | 2.75 | 2.95 | 2.85 | 25.0 | 0.009 | 1.07 | 1.0 | 0.05 | 16.02 | 0.01 | 1.556 | 16.84 | 2.25 | 7.5 | 92.3 | 0.2 | -2.40 | 0.29 | 0.01 | 0.23 | 25.0 | 0.003 | 0.74 | 0.0 | 0.04 | 16.77 | 0.00 | 2.117 | 17.33 | 2.69 | 7.5 | 92.4 | 0.1 | -1.54 | 1.60 | 0.34 | 0.15 | 0.46 | 21879 | 2655 | 16 | 54 | 10 | 7 | 0 | logfile |
✔ | 7TUi | 26132 | 2023-07-13 | 2022-02-02 | 2.66 | 2.87 | — | 2.9 | 0.005 | 0.87 | 0.0 | 0.05 | 12.34 | 0.01 | 2.034 | 16.42 | 0.00 | 6.8 | 92.8 | 0.4 | -2.00 | 0.35 | 0.69 | 2.57 | 2.9 | 0.003 | 0.68 | 0.0 | 0.04 | 15.92 | 0.00 | 2.085 | 14.18 | 1.33 | 6.1 | 93.6 | 0.3 | -1.06 | 1.19 | 0.34 | 0.73 | 2.39 | 27380 | 3466 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7T4F | 25675 | 2023-07-04 | 2021-12-09 | 2.7 | 3.13 | 2.69 | 3.1 | 0.004 | 0.70 | 0.0 | 0.05 | 14.61 | 0.00 | 2.228 | 4.75 | 2.44 | 0.3 | 99.7 | 0.0 | 0.54 | 0.33 | 0.71 | 4.04 | 3.1 | 0.003 | 0.52 | 0.0 | 0.05 | 15.29 | 0.00 | 2.217 | 4.40 | 1.41 | 0.6 | 99.4 | 0.0 | 0.30 | 0.37 | 0.34 | 0.80 | 4.44 | 7224 | 980 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XTB | 10618 | 2023-07-03 | 2020-01-15 | 4.3 | 4.32 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 8.68 | 0.00 | 2.369 | 3.00 | 0.00 | 15.6 | 84.4 | 0.0 | -4.66 | 0.32 | 0.43 | — | 4.1 | 0.005 | 1.12 | 0.0 | 0.05 | 9.13 | 0.00 | 2.119 | 10.22 | 0.00 | 25.1 | 74.9 | 0.0 | -5.72 | 2.48 | 0.34 | 0.65 | — | 1161 | 235 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ELL | 31184 | 2023-07-05 | 2021-04-12 | 3.8 | 4.24 | — | 3.8 | 0.006 | 0.86 | 1.0 | 0.05 | 14.83 | 0.01 | 1.176 | 17.74 | 0.62 | 8.9 | 90.9 | 0.2 | -2.13 | 0.35 | 0.86 | 1.77 | 3.8 | 0.005 | 0.77 | 0.0 | 0.05 | 15.99 | 0.00 | 2.030 | 12.91 | 0.40 | 4.8 | 95.1 | 0.1 | -0.02 | 1.31 | 0.34 | 0.88 | 1.94 | 60584 | 7917 | 31 | 0 | 10 | 0 | 0 | logfile |
✔ | 6ZMS | 11300 | 2023-07-06 | 2020-07-03 | 3.4 | 3.78 | — | 3.8 | 0.019 | 1.98 | 3.0 | 0.10 | 14.13 | 0.01 | 2.427 | 0.32 | 2.12 | 5.6 | 91.4 | 3.0 | -2.88 | 0.40 | 0.72 | 1.84 | 3.7 | 0.004 | 0.64 | 0.0 | 0.04 | 15.70 | 0.00 | 2.031 | 5.57 | 0.14 | 6.2 | 93.4 | 0.4 | -1.93 | 1.76 | 0.35 | 0.84 | 3.57 | 12570 | 818 | 4 | 0 | 0 | 0 | 6173 | logfile |
✔ | 7JQQ | 22441 | 2023-07-13 | 2020-08-11 | 4.1 | 4.43 | — | 4.3 | 0.004 | 0.88 | 0.0 | 0.04 | 23.12 | 0.01 | 1.379 | 26.31 | 0.00 | 9.7 | 90.3 | 0.0 | -2.31 | 0.35 | 0.57 | — | 4.3 | 0.003 | 0.78 | 0.0 | 0.04 | 22.83 | 0.00 | 1.952 | 22.64 | 0.00 | 9.6 | 90.4 | 0.0 | -2.18 | 0.49 | 0.35 | 0.58 | — | 28416 | 1635 | 15 | 705 | 6 | 0 | 0 | logfile |
✔ | 6oEE | 20020 | 2023-07-13 | 2019-03-27 | 3.8 | 3.96 | — | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 17.19 | 0.01 | 2.159 | 9.17 | 3.57 | 14.9 | 85.1 | 0.0 | -4.60 | 0.35 | 0.74 | 0.83 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 17.76 | 0.00 | 2.249 | 11.89 | 0.67 | 12.7 | 87.3 | 0.0 | -1.07 | 0.97 | 0.35 | 0.75 | 0.82 | 28000 | 3402 | 14 | 0 | 0 | 0 | 0 | logfile |