Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Qi8	4552	2023-11-16	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.85	0.0	0.04	17.56	0.00	2.143	15.66	0.19	7.7	92.3	0.0	-2.16	1.53	0.32	0.22	0.51	14789	1907	12	0	6	0	0	logfile
✔	6QJP	4565	2023-11-13	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.004	0.77	0.0	0.05	12.80	0.00	2.338	11.00	0.00	4.3	95.7	0.0	-3.48	1.60	0.32	0.73	4.73	816	105	3	0	0	0	0	logfile
✔	6DLU	7957	2023-11-15	2018-06-02	3.75	3.84	—	3.8	0.009	0.95	0.0	0.05	9.95	0.00	1.944	12.48	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.003	0.64	0.0	0.04	13.80	0.00	1.956	8.82	0.08	4.9	95.1	0.0	0.13	2.20	0.32	0.81	1.20	11991	1481	4	0	4	0	0	logfile
✔	7U10	26273	2023-11-13	2022-02-19	3.0	3.45	—	4.3	0.004	0.64	0.0	0.05	14.04	0.00	2.230	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.2	0.003	0.63	0.0	0.06	16.54	0.00	2.217	9.82	2.91	5.5	94.5	0.0	-3.08	2.75	0.32	0.71	3.20	3429	405	6	0	12	0	0	logfile
✔	8A1S	15086	2023-11-16	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	10.01	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.5	0.004	0.76	0.0	0.05	12.92	0.01	2.069	15.85	0.36	4.4	95.5	0.2	-1.00	1.62	0.32	0.20	—	67152	8528	32	0	32	0	0	logfile
✔	7QKH	14042	2023-11-13	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	1.29	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	3.5	0.003	0.96	0.0	0.22	15.30	0.00	2.124	7.42	0.00	5.2	94.8	0.0	-2.68	2.29	0.32	0.70	4.11	3105	204	6	0	0	0	1593	logfile
✔	8Q9o	18287	2023-11-14	2023-08-20	3.1	3.14	2.95	3.1	0.012	1.87	0.0	0.09	11.25	0.01	2.518	0.28	3.03	3.0	97.0	0.0	-1.40	0.32	0.80	5.39	3.1	0.003	0.59	0.0	0.05	13.90	0.00	2.051	4.41	0.25	2.7	97.3	0.0	-1.16	3.55	0.32	0.81	5.30	7032	450	6	0	0	0	3588	logfile
✔	8DWJ	27756	2023-11-13	2022-08-01	3.9	3.19	3.82	3.1	0.005	1.05	0.0	0.06	15.49	0.01	2.218	13.71	0.33	5.9	94.1	0.0	-2.71	0.33	0.57	0.88	3.1	0.003	0.72	0.0	0.05	17.63	0.01	2.225	19.40	0.00	6.8	93.2	0.0	-1.57	2.76	0.32	0.57	0.80	3043	339	3	11	2	0	0	logfile
✔	8H9G	34566	2023-11-13	2022-10-25	2.95	3.31	3.17	3.3	0.008	0.77	0.0	0.05	14.93	0.01	2.278	10.74	0.00	5.8	94.2	0.0	-2.39	0.34	0.81	2.01	3.3	0.003	0.64	0.0	0.04	17.92	0.00	2.128	8.05	3.38	4.1	95.9	0.0	2.24	0.91	0.33	0.81	1.89	3381	421	3	0	0	0	0	logfile
✔	8JMT	36426	2023-11-13	2023-06-05	3.3	3.55	3.41	3.7	0.003	0.74	0.0	0.04	14.38	0.00	2.204	8.56	0.00	3.5	96.5	0.0	-0.01	0.35	0.59	1.38	3.7	0.004	0.65	0.0	0.04	16.13	0.00	2.238	11.67	0.00	4.0	96.0	0.0	1.51	1.16	0.33	0.61	0.92	1894	234	1	0	0	0	0	logfile
✔	8Q7T	18233	2023-11-15	2023-08-17	3.0	2.38	2.99	3.1	0.011	1.80	0.0	0.09	12.35	0.01	2.480	0.10	0.18	2.4	97.6	0.0	-1.65	0.27	0.65	4.83	3.0	0.003	0.57	0.0	0.05	16.68	0.00	2.070	5.56	2.29	2.7	97.3	0.0	-1.43	1.53	0.33	0.82	4.46	10083	654	9	0	0	0	5136	logfile
✔	5GAK	3227	2023-11-18	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.003	0.83	0.0	0.04	19.62	0.01	1.977	24.30	0.53	9.4	90.1	0.4	-2.72	1.99	0.33	0.25	0.07	128975	6434	50	3597	234	0	0	logfile
✔	6L4S	0833	2023-11-13	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.005	0.79	0.0	0.05	15.37	0.00	2.237	13.28	0.88	10.1	89.9	0.0	-3.47	3.12	0.33	0.72	1.68	2268	330	6	0	0	0	0	logfile
✔	6QJM	4564	2023-11-13	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.57	0.0	0.05	13.66	0.00	2.146	4.49	0.00	5.1	94.9	0.0	-2.42	1.59	0.33	0.73	2.58	846	111	3	0	0	0	0	logfile
✔	7ZFW	14704	2023-11-15	2022-04-01	3.8	4.62	3.46	3.0	0.006	0.83	0.0	0.05	17.97	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.008	0.86	0.0	0.04	20.23	0.01	1.951	37.51	0.00	0.0	0.0	0.0	—	2.54	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	7U13	26276	2023-11-13	2022-02-19	2.9	3.67	—	4.2	0.018	2.43	0.0	0.07	16.46	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.005	1.02	0.0	0.06	17.50	0.00	2.138	20.90	3.94	11.8	88.2	0.0	-4.59	6.73	0.33	0.57	1.35	3456	405	6	0	12	0	0	logfile
✔	7NCK	12269	2023-11-13	2021-01-28	3.18	3.22	2.86	3.4	0.011	2.19	6.0	0.10	11.66	0.01	2.583	0.37	3.33	4.0	96.0	0.0	-2.54	0.39	0.71	4.89	3.4	0.003	0.58	0.0	0.05	15.74	0.00	2.151	7.19	0.37	4.3	95.7	0.0	-2.05	0.92	0.33	0.71	2.63	5430	384	6	0	0	0	2778	logfile
✔	7XMX	33307	2023-11-20	2022-04-27	3.62	3.63	3.44	22.0	0.012	1.30	7.0	0.09	12.55	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	20.0	0.003	0.70	0.0	0.04	14.46	0.00	2.060	11.54	0.19	5.7	94.2	0.1	-1.12	1.15	0.33	0.16	0.18	28727	3700	12	0	24	0	0	logfile
✔	7RTo	24685	2023-11-14	2021-08-13	3.8	3.83	—	3.8	0.004	0.82	0.0	0.05	14.32	0.00	2.200	8.55	0.16	5.6	94.4	0.0	1.09	0.32	0.76	2.41	3.8	0.002	0.64	0.0	0.04	16.57	0.00	2.236	7.92	0.16	5.3	94.7	0.0	1.56	0.51	0.33	0.78	1.86	6607	888	3	0	0	0	0	logfile
✔	6TJo	10512	2023-11-13	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.003	0.74	0.0	0.05	12.71	0.00	2.308	6.81	0.00	5.4	94.6	0.0	-3.46	1.41	0.34	0.75	4.46	2439	321	3	0	0	0	0	logfile

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