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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8oLG | 16957 | 2024-03-10 | 2023-03-30 | 4.2 | 3.16 | 3.54 | 4.2 | 0.002 | 0.41 | 0.0 | 0.05 | 9.55 | 0.00 | 2.261 | 9.57 | 0.00 | 13.5 | 86.5 | 0.0 | -4.82 | 0.25 | 0.63 | — | 4.2 | 0.004 | 0.80 | 0.0 | 0.05 | 15.39 | 0.00 | 2.337 | 19.49 | 0.00 | 19.5 | 80.5 | 0.0 | -4.20 | 1.59 | 0.29 | 0.65 | — | 1490 | 195 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P3R | 13185 | 2024-03-11 | 2021-07-08 | 3.65 | 3.16 | 3.57 | 3.5 | 0.006 | 0.81 | 1.0 | 0.05 | 13.66 | 0.01 | 2.306 | 1.88 | 0.28 | 2.7 | 97.3 | 0.0 | -3.67 | 0.30 | 0.70 | 1.05 | 3.5 | 0.004 | 0.58 | 0.0 | 0.04 | 14.87 | 0.00 | 2.161 | 4.97 | 5.90 | 2.3 | 97.7 | 0.0 | 3.51 | 0.55 | 0.29 | 0.64 | 1.05 | 7738 | 1338 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8X63 | 38078 | 2024-03-10 | 2023-11-20 | 3.2 | 4.09 | 3.72 | 4.5 | 0.005 | 0.74 | 1.0 | 0.05 | 15.26 | 0.01 | 2.411 | 9.43 | 0.81 | 8.0 | 92.0 | 0.0 | -0.11 | 0.13 | 0.13 | 0.69 | 4.1 | 0.004 | 0.74 | 0.0 | 0.04 | 17.26 | 0.01 | 2.293 | 9.87 | 2.85 | 7.6 | 92.4 | 0.0 | -0.32 | 1.25 | 0.29 | 0.45 | 0.26 | 2252 | 270 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8RB5 | 19026 | 2024-03-11 | 2023-12-03 | 3.3 | 3.79 | 3.44 | 3.7 | 0.012 | 1.72 | 0.0 | 0.08 | 14.63 | 0.01 | 2.585 | 0.34 | 0.64 | 2.2 | 97.8 | 0.0 | -2.05 | 0.29 | 0.74 | 1.91 | 3.7 | 0.002 | 0.55 | 0.0 | 0.03 | 17.49 | 0.00 | 2.233 | 8.44 | 1.71 | 2.4 | 97.6 | 0.0 | 2.04 | 1.43 | 0.30 | 0.80 | 2.10 | 8772 | 540 | 3 | 0 | 0 | 0 | 4422 | logfile |
✔ | 5JXL | 8179 | 2024-03-15 | 2016-05-13 | 3.5 | 3.48 | — | 3.6 | 0.008 | 1.39 | 0.0 | 0.06 | 9.65 | 0.00 | 1.795 | 18.18 | 0.15 | 8.7 | 89.0 | 2.2 | -2.06 | 0.30 | 0.77 | 1.70 | 3.5 | 0.004 | 0.79 | 0.0 | 0.05 | 15.97 | 0.00 | 2.116 | 13.37 | 5.70 | 7.6 | 92.1 | 0.4 | -1.65 | 1.50 | 0.30 | 0.83 | 2.03 | 69993 | 9361 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WHP | 32507 | 2024-03-17 | 2021-12-31 | 3.7 | 3.28 | — | 3.3 | 0.004 | 0.62 | 0.0 | 0.04 | 15.13 | 0.01 | 2.209 | 8.40 | 0.00 | 2.9 | 97.0 | 0.0 | -0.85 | 0.30 | 0.77 | 2.67 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 16.53 | 0.00 | 2.068 | 8.54 | 2.76 | 2.6 | 97.3 | 0.0 | -0.46 | 1.53 | 0.30 | 0.77 | 2.41 | 17038 | 2114 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2024-03-17 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 12.69 | 0.01 | 0.901 | 4.89 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.5 | 0.003 | 0.74 | 0.0 | 0.04 | 14.85 | 0.00 | 1.975 | 14.50 | 1.99 | 5.6 | 94.4 | 0.0 | -0.84 | 1.64 | 0.30 | 0.20 | 0.61 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2024-03-10 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 3.9 | 0.003 | 0.66 | 0.0 | 0.03 | 15.97 | 0.00 | 2.278 | 7.54 | 1.01 | 7.0 | 93.0 | 0.0 | -0.88 | 1.30 | 0.30 | 0.04 | 1.02 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 6K32 | 9907 | 2024-03-12 | 2019-05-16 | 3.2 | 3.73 | — | 3.8 | 0.009 | 1.22 | 1.0 | 0.07 | 11.62 | 0.01 | 1.345 | 10.22 | 1.25 | 6.3 | 93.3 | 0.3 | -4.88 | 0.28 | 0.72 | 1.49 | 3.7 | 0.005 | 0.79 | 0.0 | 0.05 | 16.47 | 0.00 | 1.292 | 12.86 | 4.47 | 6.1 | 93.9 | 0.1 | -1.34 | 1.61 | 0.31 | 0.83 | 2.37 | 61364 | 7723 | 10 | 8 | 6 | 0 | 0 | logfile |
✔ | 7V49 | 31704 | 2024-03-10 | 2021-08-12 | 3.4 | 3.45 | — | 4.1 | 0.007 | 1.01 | 0.0 | 0.06 | 13.70 | 0.00 | 2.279 | 22.06 | 0.00 | 39.7 | 60.3 | 0.0 | -7.67 | 0.33 | 0.73 | 5.03 | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 14.90 | 0.00 | 2.443 | 8.42 | 4.88 | 14.9 | 85.1 | 0.0 | -5.73 | 1.14 | 0.31 | 0.69 | 5.16 | 1221 | 180 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Q9J | 18283 | 2024-03-11 | 2023-08-20 | 2.96 | 2.81 | 3.01 | 2.7 | 0.011 | 1.86 | 0.0 | 0.09 | 10.83 | 0.01 | 2.532 | 0.00 | 0.00 | 1.2 | 98.8 | 0.0 | -1.24 | 0.26 | 0.75 | 6.29 | 2.9 | 0.003 | 0.55 | 0.0 | 0.05 | 15.41 | 0.00 | 2.295 | 1.76 | 0.26 | 2.3 | 97.7 | 0.0 | -1.65 | 0.91 | 0.31 | 0.84 | 6.15 | 6822 | 438 | 6 | 0 | 0 | 0 | 3480 | logfile |
✔ | 6QJH | 4563 | 2024-03-10 | 2019-01-24 | 3.3 | 3.70 | 2.77 | 3.6 | 0.012 | 1.21 | 3.0 | 0.10 | 14.39 | 0.01 | 2.673 | 1.49 | 1.96 | 7.0 | 93.0 | 0.0 | -3.22 | 0.36 | 0.83 | 2.97 | 3.6 | 0.003 | 0.62 | 0.0 | 0.05 | 15.47 | 0.00 | 2.267 | 2.99 | 3.27 | 3.5 | 96.5 | 0.0 | -2.60 | 1.52 | 0.31 | 0.78 | 2.54 | 1302 | 177 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W6P | 32331 | 2024-03-11 | 2021-12-02 | 3.47 | 3.79 | — | 9.6 | 0.004 | 0.70 | 0.0 | 0.04 | 13.78 | 0.00 | 2.196 | 14.60 | 0.11 | 7.0 | 93.0 | 0.0 | -0.94 | 0.22 | 0.11 | 0.18 | 8.7 | 0.003 | 0.66 | 0.0 | 0.04 | 15.30 | 0.00 | 2.211 | 13.58 | 2.11 | 5.7 | 94.3 | 0.0 | -0.69 | 1.89 | 0.31 | 0.25 | 0.29 | 8408 | 1083 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7RTN | 24684 | 2024-03-10 | 2021-08-13 | 3.4 | 3.47 | — | 3.5 | 0.004 | 0.63 | 0.0 | 0.04 | 14.58 | 0.00 | 2.298 | 6.03 | 0.00 | 6.1 | 93.9 | 0.0 | 0.60 | 0.31 | 0.74 | 3.40 | 3.5 | 0.002 | 0.54 | 0.0 | 0.04 | 16.48 | 0.00 | 2.169 | 7.69 | 3.06 | 4.5 | 95.5 | 0.0 | 1.51 | 0.35 | 0.31 | 0.78 | 2.75 | 6018 | 810 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Yo3 | 33980 | 2024-03-14 | 2022-08-01 | 3.1 | 2.47 | 2.93 | 2.9 | 0.004 | 0.67 | 0.0 | 0.05 | 13.95 | 0.01 | 2.207 | 9.01 | 0.21 | 3.7 | 96.3 | 0.0 | 0.21 | 0.26 | 0.61 | 1.96 | 2.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.63 | 0.00 | 2.123 | 8.96 | 2.98 | 3.3 | 96.7 | 0.0 | -0.08 | 0.86 | 0.31 | 0.74 | 2.65 | 8961 | 1144 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 8Q8S | 18259 | 2024-03-15 | 2023-08-18 | 2.68 | 2.07 | 2.67 | 2.3 | 0.011 | 2.11 | 3.0 | 0.10 | 9.52 | 0.01 | 2.513 | 0.47 | 0.00 | 7.2 | 92.8 | 0.0 | -1.68 | 0.30 | 0.74 | 5.06 | 2.2 | 0.003 | 0.68 | 0.0 | 0.05 | 16.25 | 0.01 | 2.024 | 5.56 | 1.35 | 5.4 | 94.6 | 0.0 | -2.75 | 1.86 | 0.31 | 0.79 | 4.99 | 10611 | 684 | 9 | 0 | 0 | 0 | 5409 | logfile |
✔ | 7QL4 | 14063 | 2024-03-11 | 2021-12-19 | 3.2 | 3.36 | 2.99 | 3.5 | 0.011 | 1.86 | 0.0 | 0.10 | 12.28 | 0.01 | 2.511 | 0.28 | 0.00 | 8.3 | 91.7 | 0.0 | -1.77 | 0.26 | 0.51 | 0.51 | 3.4 | 0.005 | 1.22 | 0.0 | 0.05 | 15.22 | 0.01 | 2.037 | 8.35 | 2.78 | 2.5 | 97.5 | 0.0 | -2.02 | 3.12 | 0.31 | 0.75 | 3.50 | 7074 | 456 | 6 | 0 | 0 | 0 | 3606 | logfile |
✔ | 3KTT | 5148 | 2024-03-10 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 2.1 | 0.005 | 1.19 | 0.0 | 0.06 | 17.22 | 0.01 | 2.007 | 33.74 | 4.89 | 10.6 | 88.3 | 1.2 | -2.44 | 1.71 | 0.31 | 0.42 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R4R | 4727 | 2024-03-10 | 2019-03-23 | 3.4 | 3.01 | 1.77 | 3.8 | 0.008 | 1.43 | 0.0 | 0.08 | 10.87 | 0.01 | 2.308 | 6.73 | 0.00 | 12.0 | 88.0 | 0.0 | -5.16 | 0.32 | 0.64 | 5.08 | 3.6 | 0.005 | 0.82 | 0.0 | 0.05 | 16.86 | 0.00 | 2.092 | 17.18 | 6.35 | 9.1 | 90.9 | 0.0 | -4.83 | 1.37 | 0.32 | 0.68 | 4.07 | 4312 | 539 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DLU | 7957 | 2024-03-15 | 2018-06-02 | 3.75 | 3.84 | — | 3.8 | 0.009 | 0.95 | 0.0 | 0.05 | 11.14 | 0.00 | 1.944 | 12.48 | 0.23 | 5.7 | 94.3 | 0.0 | -2.78 | 0.31 | 0.77 | 1.09 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.25 | 0.00 | 1.958 | 9.11 | 1.44 | 4.4 | 95.6 | 0.0 | 0.01 | 2.17 | 0.32 | 0.82 | 1.56 | 11991 | 1481 | 4 | 0 | 4 | 0 | 0 | logfile |