Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5Li4	4052	2022-07-04	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.15	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	13.71	0.01	2.118	26.70	0.00	14.0	85.0	1.0	-3.83	4.19	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✔	7JQQ	22441	2022-07-06	2020-08-11	4.1	4.43	—	4.3	0.004	0.88	0.0	0.04	23.12	0.01	1.379	26.31	0.00	9.7	90.3	0.0	-2.31	0.35	0.57	—	4.3	0.004	0.84	0.0	0.04	23.06	0.01	1.872	25.07	0.00	9.0	91.0	0.0	-2.58	0.51	0.35	0.59	—	28416	1635	15	705	6	0	0	logfile
✔	6oEE	20020	2022-07-05	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	3.8	0.003	0.82	0.0	0.04	17.71	0.00	2.198	11.90	0.38	13.8	86.2	0.0	-1.28	0.99	0.35	0.75	0.95	28000	3402	14	0	0	0	0	logfile
✔	7NCK	12269	2022-07-03	2021-01-28	3.18	3.22	2.86	3.4	0.011	2.19	6.0	0.10	11.66	0.01	2.583	0.37	3.33	4.0	96.0	0.0	-2.54	0.39	0.71	4.89	3.4	0.002	0.57	0.0	0.06	15.96	0.00	2.157	6.82	0.74	3.0	97.0	0.0	-2.17	0.96	0.35	0.72	2.23	5430	384	6	0	0	0	2778	logfile
✔	7CN2	30414	2022-07-06	2020-07-29	3.43	3.94	—	4.0	0.006	1.06	5.0	0.06	15.71	0.01	1.385	8.84	4.47	7.9	91.5	0.6	-3.95	0.37	0.80	2.16	3.9	0.006	0.87	0.0	0.05	16.71	0.01	2.105	10.48	0.50	7.7	92.1	0.1	-2.06	0.70	0.35	0.79	2.12	32841	4233	18	0	0	0	0	logfile
✔	6ZMS	11300	2022-07-03	2020-07-03	3.4	3.78	—	3.8	0.019	1.98	3.0	0.10	14.13	0.01	2.427	0.32	2.12	5.6	91.4	3.0	-2.88	0.40	0.72	1.84	3.7	0.020	1.12	0.0	0.04	15.82	0.01	2.018	6.21	0.14	7.2	92.4	0.4	-2.00	1.77	0.35	0.84	3.47	12570	818	4	0	0	0	6173	logfile
✔	7N5F	24188	2022-07-02	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.35	0.77	3.26	3037	386	1	0	1	0	0	logfile
✔	6L4S	0833	2022-07-02	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.35	0.75	2.16	2268	330	6	0	0	0	0	logfile
✔	6M7D	30129	2022-07-03	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	13.84	0.00	2.157	15.64	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.003	0.53	0.0	0.04	16.07	0.00	2.239	8.74	1.46	1.5	98.5	0.0	2.10	0.84	0.35	0.87	3.01	3280	412	2	6	0	0	0	logfile
✔	7QJX	14025	2022-07-04	2021-12-17	2.99	3.05	3.00	2.8	0.014	2.56	5.0	0.24	13.83	0.02	2.532	0.29	0.00	1.7	98.2	0.1	-2.52	0.35	0.70	3.48	2.8	0.004	1.21	0.0	0.31	16.23	0.00	2.142	3.83	1.41	5.8	94.2	0.0	-3.64	2.47	0.36	0.78	3.29	13860	900	12	0	0	0	7056	logfile
✔	7QKG	14041	2022-07-02	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.60	0.0	0.05	13.51	0.00	2.262	5.27	0.00	2.6	97.4	0.0	-1.55	1.17	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	7QKJ	14044	2022-07-03	2021-12-17	3.26	3.08	3.11	3.2	0.012	2.04	12.0	0.16	11.59	0.01	2.510	0.78	0.00	9.9	90.1	0.0	-2.24	0.35	0.71	3.92	3.2	0.008	1.25	0.0	0.05	15.83	0.00	2.123	13.88	0.51	7.6	92.4	0.0	-2.75	1.10	0.36	0.85	2.87	6888	900	12	0	0	0	0	logfile
✔	6ZGA	11199	2022-07-05	2020-06-18	4.6	5.12	4.44	4.9	0.011	1.53	0.0	0.08	14.65	0.01	2.071	13.24	0.07	10.1	89.7	0.2	-3.01	0.41	0.70	—	4.9	0.004	0.76	0.0	0.04	13.79	0.01	2.038	21.42	0.00	7.2	92.7	0.1	-1.33	2.01	0.36	0.68	—	26963	3413	14	0	8	0	0	logfile
✔	5MPE	3535	2022-07-07	2016-12-16	4.5	4.55	—	4.5	0.034	3.32	297.0	0.19	17.16	0.03	1.158	3.98	2.25	5.2	92.6	2.2	-1.86	0.28	0.39	—	4.5	0.004	0.87	0.0	0.04	14.95	0.00	2.008	22.40	0.02	6.2	93.4	0.3	-1.12	2.47	0.36	0.68	—	40974	5142	13	0	0	0	0	logfile
✔	7QK5	14038	2022-07-03	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.67	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.64	0.0	0.05	18.34	0.01	2.238	4.68	2.74	3.7	96.3	0.0	-1.87	1.49	0.36	0.83	7.41	10485	666	18	0	36	0	5337	logfile
✔	7DA4	30622	2022-07-02	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.36	0.58	—	507	66	3	0	0	0	0	logfile
✔	6TQM	10555	2022-07-07	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.8	0.011	1.11	1.0	0.04	15.94	0.00	1.851	15.53	0.43	10.5	89.5	0.0	-3.67	1.07	0.36	0.21	0.31	39616	2578	6	0	4	0	19804	logfile
✔	6TJo	10512	2022-07-02	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.80	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.006	0.88	0.0	0.05	13.23	0.00	2.284	10.02	0.35	11.1	88.9	0.0	-3.87	1.40	0.36	0.79	3.90	2439	321	3	0	0	0	0	logfile
✔	7QJY	14026	2022-07-03	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.008	0.87	0.0	0.05	17.16	0.01	2.116	9.11	1.26	3.4	96.6	0.0	-2.45	3.42	0.36	0.84	4.60	3444	450	6	0	0	0	0	logfile
✔	7U16	26279	2022-07-03	2022-02-19	2.7	3.30	—	3.5	0.003	0.55	0.0	0.05	14.72	0.00	2.310	8.58	0.00	6.8	93.2	0.0	-2.67	0.29	0.68	2.62	3.5	0.004	0.57	0.0	0.06	16.80	0.00	2.186	8.14	0.79	5.8	94.2	0.0	-2.64	1.73	0.37	0.80	4.99	3456	405	6	0	12	0	0	logfile

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