Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TJo	10512	2021-11-01	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.005	0.80	0.0	0.05	13.25	0.00	2.326	9.01	0.71	9.5	90.5	0.0	-3.63	1.42	0.36	0.78	4.13	2439	321	3	0	0	0	0	logfile
✔	7CN2	30414	2021-11-04	2020-07-29	3.43	3.94	—	4.0	0.006	1.06	5.0	0.06	15.71	0.01	1.385	8.81	4.47	7.9	91.5	0.6	-3.95	0.37	0.80	2.16	3.9	0.009	1.04	2.0	0.05	16.81	0.01	1.819	16.36	0.08	10.0	89.8	0.2	-2.31	0.74	0.36	0.80	2.11	32841	4233	18	0	0	0	0	logfile
✔	5MPE	3535	2021-11-05	2016-12-16	4.5	4.55	—	4.5	0.034	3.32	297.0	0.19	17.16	0.03	1.158	3.96	2.25	5.2	92.6	2.2	-1.86	0.28	0.39	—	4.5	0.009	1.02	2.0	0.04	14.96	0.00	1.628	21.40	0.00	5.4	94.3	0.3	-0.57	2.52	0.36	0.68	—	40974	5142	13	0	0	0	0	logfile
✔	6ZMS	11300	2021-11-02	2020-07-03	3.4	3.78	—	3.8	0.019	1.98	3.0	0.10	14.13	0.01	2.427	0.32	2.12	5.6	91.4	3.0	-2.88	0.40	0.72	1.84	3.7	0.021	1.12	0.0	0.04	15.75	0.01	1.995	5.49	0.14	6.8	92.8	0.4	-1.95	1.78	0.36	0.84	3.82	12570	818	4	0	0	0	6173	logfile
✔	6QJQ	4566	2021-11-01	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.2	0.005	0.83	0.0	0.05	14.21	0.00	2.290	9.97	0.69	6.7	93.3	0.0	-3.08	2.14	0.37	0.75	1.88	1218	162	6	0	0	0	0	logfile
✔	5L4K	4002	2021-11-04	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.02	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.009	0.98	1.0	0.04	17.27	0.01	1.850	16.28	0.44	8.4	91.2	0.5	-1.56	1.82	0.37	0.70	0.30	79649	5000	12	0	0	0	39990	logfile
✔	7FG2	31574	2021-11-01	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.59	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.003	0.74	0.0	0.05	14.24	0.00	2.172	15.89	0.19	12.8	86.9	0.3	-2.50	0.88	0.37	0.63	—	9342	1202	2	0	0	0	0	logfile
✔	5H0R	9564	2021-11-02	2016-10-06	3.9	3.72	—	3.7	0.008	0.81	0.0	0.05	10.30	0.00	1.744	19.89	0.28	8.5	91.4	0.1	-4.11	0.33	0.70	1.99	3.7	0.007	0.95	0.0	0.04	15.23	0.01	2.021	18.96	0.35	6.1	93.7	0.2	-0.92	1.21	0.37	0.76	2.01	15037	1656	4	84	0	0	0	logfile
✔	6CU7	7618	2021-11-01	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.4	0.003	0.67	0.0	0.05	14.26	0.00	2.181	15.38	0.48	14.5	85.5	0.0	-4.70	2.56	0.37	0.72	1.43	4140	600	10	0	0	0	0	logfile
✔	7C1D	30269	2021-11-01	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.002	0.60	0.0	0.05	14.80	0.00	2.276	14.22	0.52	11.6	88.4	0.0	-4.18	2.84	0.38	0.72	2.37	2034	306	6	0	0	0	0	logfile
✔	4V1A	2787	2021-11-04	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.17	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.005	0.81	0.0	0.04	16.88	0.01	1.598	11.69	0.21	3.9	96.0	0.1	0.77	1.93	0.38	0.77	1.70	31917	3843	24	0	94	0	0	logfile
✔	7DNL	30787	2021-11-03	2020-12-09	4.19	4.89	—	4.7	0.005	1.03	0.0	0.06	14.88	0.01	1.747	6.63	0.57	7.3	92.6	0.1	-4.29	0.38	0.78	—	4.7	0.004	0.73	0.0	0.05	13.63	0.01	2.138	17.54	0.00	7.7	92.3	0.0	-2.17	0.77	0.38	0.78	—	21847	2769	7	0	0	0	0	logfile
✔	6oGY	20059	2021-11-04	2019-04-03	3.4	3.58	—	3.7	0.006	0.79	0.0	0.05	15.72	0.01	2.283	3.56	0.18	3.8	96.1	0.0	-5.60	0.41	0.85	2.69	3.7	0.004	0.59	0.0	0.04	17.38	0.00	2.159	6.56	0.48	3.4	96.6	0.0	-2.11	1.17	0.38	0.85	2.14	74364	9081	13	6	1	0	0	logfile
✔	5WK5	8855	2021-11-06	2017-07-24	4.2	4.02	—	4.0	0.010	1.08	0.0	0.05	9.64	0.01	1.909	5.08	0.00	9.8	90.2	0.0	-2.83	0.34	0.73	—	4.0	0.004	0.63	0.0	0.04	14.17	0.00	1.957	19.11	0.00	9.0	91.0	0.0	1.52	1.24	0.38	0.74	—	161786	11029	41	0	0	0	80606	logfile
✔	5AN9	3145	2021-11-05	2015-09-06	3.3	3.29	—	3.3	0.007	1.22	5.0	0.10	17.04	0.01	1.192	3.54	2.32	9.1	88.0	2.9	-3.68	0.38	0.81	1.98	3.3	0.007	0.84	1.0	0.04	17.23	0.01	2.091	13.14	1.04	7.6	91.8	0.6	-2.46	1.56	0.38	0.77	1.27	39693	1905	11	1162	0	0	0	logfile
✔	6HRF	0260	2021-11-01	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.006	0.87	0.0	0.05	17.03	0.00	2.269	10.06	1.00	8.0	92.0	0.0	-3.37	3.76	0.38	0.78	3.64	3522	462	6	0	0	0	0	logfile
✔	6L31	0816	2021-11-03	2019-10-07	4.18	4.92	—	4.8	0.007	1.26	7.0	0.07	16.23	0.01	1.738	16.77	2.27	11.7	88.0	0.3	-4.45	0.38	0.72	—	4.8	0.009	0.99	1.0	0.05	14.11	0.01	2.111	23.07	0.09	10.5	89.5	0.0	-2.87	2.44	0.38	0.71	—	20905	2670	6	0	0	0	0	logfile
✔	7ELH	31183	2021-11-02	2021-04-11	3.3	3.97	—	3.7	0.006	0.82	1.0	0.05	12.97	0.00	1.043	9.11	0.21	3.9	96.1	0.1	0.36	0.35	0.69	3.16	3.6	0.004	0.54	0.0	0.04	14.79	0.00	1.881	29.32	0.45	4.3	95.7	0.0	1.17	1.17	0.39	0.89	2.64	114995	13378	27	310	1	0	3098	logfile
✔	7DNH	30783	2021-11-03	2020-12-09	3.64	4.22	—	4.2	0.008	1.08	0.0	0.06	15.01	0.01	1.791	6.14	0.78	9.6	90.2	0.2	-4.48	0.39	0.79	2.34	4.2	0.006	0.95	0.0	0.05	16.30	0.01	1.999	16.28	0.16	7.8	92.2	0.0	-2.59	1.32	0.39	0.79	2.02	21788	2762	7	0	0	0	0	logfile
✔	5VZL	8749	2021-11-02	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.011	1.14	1.0	0.04	15.64	0.00	1.217	12.59	0.25	5.7	94.3	0.0	-1.15	1.41	0.39	0.20	0.37	13915	1451	3	115	1	0	0	logfile

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