Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FG2	31574	2023-04-21	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.004	0.76	0.0	0.05	14.45	0.00	2.118	18.43	0.00	13.3	86.4	0.3	-2.81	0.77	0.37	0.64	—	9342	1202	2	0	0	0	0	logfile
✔	7DNL	30787	2023-04-26	2020-12-09	4.19	4.89	—	4.7	0.005	1.03	0.0	0.06	14.88	0.01	1.747	6.63	0.57	7.3	92.6	0.1	-4.29	0.38	0.78	—	4.7	0.004	0.75	0.0	0.05	13.63	0.01	1.969	18.07	0.04	9.1	90.9	0.0	-2.49	0.75	0.38	0.79	—	21847	2769	7	0	0	0	0	logfile
✔	3J2P	5499	2023-04-21	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.56	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.89	0.0	0.04	17.84	0.00	1.911	69.53	1.47	18.7	77.9	3.4	-4.26	0.93	0.38	0.72	0.85	9890	1134	8	0	6	0	1086	logfile
✔	6L31	0816	2023-04-25	2019-10-07	4.18	4.92	—	4.8	0.007	1.26	7.0	0.07	16.23	0.01	1.738	16.77	2.27	11.7	88.0	0.3	-4.45	0.38	0.72	—	4.9	0.005	0.86	0.0	0.05	14.12	0.01	1.950	28.23	0.04	12.5	87.4	0.1	-3.26	2.40	0.38	0.72	—	20905	2670	6	0	0	0	0	logfile
✔	5VZL	8749	2023-04-23	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.64	0.0	0.04	15.49	0.00	1.241	12.10	0.08	5.0	95.0	0.0	-1.15	1.21	0.38	0.18	0.61	13915	1451	3	115	1	0	0	logfile
✔	6oGY	20059	2023-04-28	2019-04-03	3.4	3.58	—	3.7	0.006	0.79	0.0	0.05	15.76	0.01	2.283	3.56	0.18	3.8	96.1	0.0	-5.60	0.41	0.85	2.69	3.7	0.003	0.60	0.0	0.04	17.37	0.00	2.182	6.30	0.55	3.3	96.7	0.0	-2.25	1.16	0.38	0.85	2.09	74364	9081	13	6	1	0	0	logfile
✔	7DNH	30783	2023-04-26	2020-12-09	3.64	4.22	—	4.2	0.008	1.08	0.0	0.06	15.01	0.01	1.791	6.16	0.78	9.6	90.2	0.2	-4.48	0.39	0.79	2.34	4.2	0.005	0.80	0.0	0.05	16.29	0.01	2.142	15.00	0.66	9.0	91.0	0.0	-2.66	1.31	0.38	0.79	2.02	21788	2762	7	0	0	0	0	logfile
✔	7ELH	31183	2023-04-22	2021-04-11	3.3	3.97	—	3.7	0.006	0.82	1.0	0.05	12.97	0.00	1.043	9.19	0.21	3.9	96.1	0.1	0.36	0.35	0.69	3.16	3.6	0.003	0.51	0.0	0.04	14.69	0.00	1.859	28.25	0.29	3.7	96.3	0.0	1.24	1.15	0.38	0.89	2.53	114995	13378	27	310	1	0	3098	logfile
✔	6C4H	7340	2023-04-23	2018-01-12	3.1	3.33	—	3.3	0.011	1.20	1.0	0.11	16.63	0.05	1.913	7.67	6.80	5.3	94.7	0.0	-2.61	0.43	0.85	3.61	3.3	0.008	0.92	0.0	0.04	15.55	0.01	1.783	7.67	1.36	5.8	94.2	0.0	-2.30	0.39	0.39	0.85	4.75	15326	184	8	648	34	0	0	logfile
✔	6QD2	4517	2023-04-26	2018-12-31	4.8	4.92	5.85	4.9	0.006	0.86	0.0	0.04	9.04	0.01	2.025	6.53	0.00	11.6	88.4	0.0	-4.60	0.35	0.62	—	4.9	0.004	0.68	0.0	0.04	10.92	0.00	2.087	11.59	0.00	9.1	90.9	0.0	-1.48	1.09	0.39	0.65	—	21746	1420	5	0	2	0	11100	logfile
✔	7CG0	30348	2023-04-21	2020-06-30	3.2	3.51	—	3.5	0.003	0.53	0.0	0.04	11.23	0.00	1.992	8.37	2.56	3.0	97.0	0.0	3.52	0.37	0.79	1.26	3.5	0.003	0.69	0.0	0.04	16.05	0.00	2.053	11.09	0.88	2.7	97.3	0.0	2.95	0.86	0.39	0.83	1.21	10928	1412	21	0	75	0	0	logfile
✔	7ZSD	14930	2023-04-19	2022-05-06	3.29	3.62	3.56	3.6	0.003	0.60	0.0	0.05	14.29	0.00	2.226	9.82	0.00	7.0	93.0	0.0	-0.09	0.38	0.74	2.01	3.6	0.003	0.66	0.0	0.05	14.79	0.00	2.257	12.46	0.90	7.0	93.0	0.0	-0.57	0.39	0.39	0.78	1.13	2120	261	3	0	2	0	0	logfile
✔	7N5G	24189	2023-04-19	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	7MDX	23783	2023-04-21	2021-04-06	3.8	4.16	—	4.1	0.004	0.70	1.0	0.05	15.48	0.01	2.228	10.45	0.10	8.4	91.6	0.0	-1.27	0.39	0.72	0.93	4.1	0.003	0.78	0.0	0.05	17.54	0.00	2.075	13.98	0.59	9.2	90.8	0.1	-1.35	0.51	0.39	0.72	0.68	9513	1234	5	0	4	0	0	logfile
✔	3J7A	2660	2023-04-26	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.56	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.003	0.70	0.0	0.04	18.04	0.01	1.866	17.03	1.05	8.0	90.8	1.2	-1.89	2.71	0.40	0.77	1.02	68866	4106	35	1682	69	0	0	logfile
✔	7WHM	32504	2023-04-21	2021-12-31	2.7	2.86	—	2.8	0.006	0.64	0.0	0.05	13.85	0.00	2.155	6.30	0.00	3.1	96.9	0.0	0.15	0.43	0.87	4.68	2.8	0.003	0.51	0.0	0.04	15.95	0.00	2.260	5.62	0.56	2.3	97.7	0.0	1.45	1.11	0.40	0.84	3.69	9650	1214	1	0	0	0	0	logfile
✔	8BC1	15959	2023-04-20	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.004	0.81	0.0	0.04	15.72	0.01	2.131	15.98	2.25	4.8	95.2	0.0	0.67	1.04	0.40	0.54	1.03	8684	1054	4	0	6	0	0	logfile
✔	8FD5	29002	2023-04-19	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile
✔	6W2E	21526	2023-04-22	2020-03-05	4.4	4.45	—	4.4	0.006	1.04	1.0	0.06	10.30	0.01	1.618	7.99	0.68	4.5	95.1	0.4	-2.37	0.33	0.53	—	4.4	0.004	0.82	0.0	0.05	13.54	0.01	2.053	16.84	0.07	6.5	93.4	0.1	-1.20	1.37	0.40	0.75	—	62525	7943	19	0	0	0	0	logfile
✔	6X0V	21985	2023-04-19	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile

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