Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZFW	14704	2022-12-13	2022-04-01	3.8	4.62	3.46	3.0	0.007	0.80	0.0	0.05	17.76	0.03	2.266	2.77	0.00	0.0	0.0	0.0	—	0.32	0.81	—	3.0	0.009	0.88	0.0	0.04	20.35	0.01	1.947	37.81	0.00	0.0	0.0	0.0	—	2.54	0.33	0.85	—	13188	0	1	615	0	0	0	logfile
✔	6QJM	4564	2022-12-11	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.58	0.0	0.06	13.83	0.00	2.178	4.49	0.00	5.1	94.9	0.0	-2.27	1.60	0.33	0.74	3.53	846	111	3	0	0	0	0	logfile
✔	7NCK	12269	2022-12-11	2021-01-28	3.18	3.22	2.86	3.4	0.011	2.19	6.0	0.10	11.66	0.01	2.583	0.37	3.33	4.0	96.0	0.0	-2.54	0.39	0.71	4.89	3.4	0.004	0.62	0.0	0.05	15.96	0.00	2.139	7.56	0.00	4.3	95.7	0.0	-2.28	0.93	0.34	0.71	2.63	5430	384	6	0	0	0	2778	logfile
✔	7QKZ	14058	2022-12-11	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.57	0.01	2.238	12.41	0.00	1.2	98.8	0.0	-0.68	5.09	0.34	0.64	6.83	1701	99	9	0	0	0	891	logfile
✔	5M3L	3434	2022-12-14	2016-10-15	3.8	2.49	—	3.8	0.013	1.53	7.0	0.08	12.48	0.01	1.442	10.31	0.59	7.4	91.5	1.1	-4.86	0.32	0.76	2.04	3.6	0.004	0.77	0.0	0.04	17.17	0.00	2.042	11.90	0.54	5.4	94.5	0.2	-0.45	0.91	0.34	0.75	1.48	19007	2394	27	0	12	0	0	logfile
✔	7U14	26277	2022-12-11	2022-02-19	4.5	4.22	—	4.6	0.006	0.90	0.0	0.06	18.13	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.006	0.96	0.0	0.07	15.68	0.00	2.175	21.37	0.00	14.8	85.2	0.0	-4.22	1.65	0.34	0.63	—	3456	405	6	0	12	0	0	logfile
✔	5Li4	4052	2022-12-14	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.0	0.004	1.00	0.0	0.05	13.63	0.01	2.096	28.96	0.00	14.1	84.7	1.2	-3.67	4.17	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✔	6XTB	10618	2022-12-11	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	7ELL	31184	2022-12-12	2021-04-12	3.8	4.24	—	3.8	0.006	0.86	1.0	0.05	14.83	0.01	1.176	17.75	0.62	8.9	90.9	0.2	-2.13	0.35	0.86	1.77	3.8	0.004	0.75	0.0	0.05	15.96	0.00	2.039	12.22	0.34	4.4	95.5	0.1	-0.01	1.31	0.34	0.88	1.98	60584	7917	31	0	10	0	0	logfile
✔	6YBV	10774	2022-12-11	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	17.69	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.004	0.88	0.0	0.05	18.62	0.00	2.034	20.85	0.00	11.0	88.9	0.1	-2.87	3.37	0.34	0.60	0.70	6731	769	5	78	0	0	0	logfile
✔	7XMX	33307	2022-12-16	2022-04-27	3.62	3.63	3.44	22.0	0.011	1.29	7.0	0.09	12.50	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	20.0	0.004	0.73	0.0	0.05	14.45	0.00	2.073	13.41	0.38	6.3	93.6	0.1	-1.25	1.16	0.34	0.17	0.17	28727	3700	12	0	24	0	0	logfile
✔	6M7D	30129	2022-12-11	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	13.84	0.00	2.157	15.64	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.003	0.53	0.0	0.04	15.81	0.00	2.240	9.20	2.62	1.2	98.8	0.0	1.93	0.83	0.34	0.89	2.88	3280	412	2	6	0	0	0	logfile
✔	7QKK	14045	2022-12-11	2021-12-17	2.8	2.31	2.82	3.2	0.012	2.17	4.0	0.12	13.17	0.02	2.483	1.98	0.00	9.5	90.5	0.0	-3.44	0.37	0.77	4.39	3.2	0.003	0.69	0.0	0.05	17.34	0.00	2.154	11.04	1.52	6.3	93.7	0.0	-3.55	2.17	0.34	0.78	3.12	3537	228	3	0	0	0	1803	logfile
✔	7QJZ	14027	2022-12-11	2021-12-17	3.4	3.37	3.42	3.5	0.011	2.09	0.0	0.10	13.72	0.01	2.490	0.58	0.00	5.3	94.4	0.2	-3.28	0.40	0.74	4.32	3.5	0.003	0.71	0.0	0.05	14.98	0.00	2.231	6.83	0.26	4.2	95.8	0.0	-2.74	3.99	0.35	0.74	4.05	3378	444	6	0	0	0	0	logfile
✔	7UN5	26613	2022-12-11	2022-04-08	3.13	3.63	3.08	3.6	0.004	0.72	0.0	0.04	14.46	0.00	2.387	12.34	0.51	7.0	93.0	0.0	-3.83	0.40	0.80	4.50	3.6	0.005	0.75	0.0	0.05	15.16	0.00	2.232	12.34	0.77	10.3	89.7	0.0	-3.94	0.50	0.35	0.74	4.69	4380	620	10	0	0	0	0	logfile
✔	6oEE	20020	2022-12-15	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	3.8	0.003	0.81	0.0	0.04	17.76	0.00	2.240	11.08	0.51	12.9	87.1	0.0	-1.11	0.99	0.35	0.75	0.70	28000	3402	14	0	0	0	0	logfile
✔	7oZG	13123	2022-12-11	2021-06-28	3.3	3.21	2.71	3.6	0.023	1.83	0.0	0.10	12.75	0.01	2.254	17.09	0.00	8.7	91.3	0.0	-4.01	0.40	0.73	3.72	3.7	0.006	0.80	0.0	0.05	15.38	0.00	2.315	16.60	0.82	15.5	84.5	0.0	-4.68	3.41	0.35	0.68	4.71	4960	730	10	0	0	0	0	logfile
✔	6ZMS	11300	2022-12-12	2020-07-03	3.4	3.78	—	3.8	0.019	1.98	3.0	0.10	14.13	0.01	2.427	0.32	2.12	5.6	91.4	3.0	-2.88	0.40	0.72	1.84	3.7	0.004	0.66	0.0	0.04	15.69	0.00	2.021	6.05	0.56	6.8	92.8	0.4	-2.03	1.77	0.35	0.84	3.67	12570	818	4	0	0	0	6173	logfile
✔	6L4S	0833	2022-12-11	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.35	0.74	2.16	2268	330	6	0	0	0	0	logfile
✔	7JQQ	22441	2022-12-16	2020-08-11	4.1	4.43	—	4.3	0.004	0.88	0.0	0.04	23.12	0.01	1.379	26.31	0.00	9.7	90.3	0.0	-2.31	0.35	0.57	—	4.3	0.005	0.92	0.0	0.05	23.22	0.01	1.853	31.60	0.00	12.8	87.1	0.1	-2.68	0.50	0.35	0.60	—	28416	1635	15	705	6	0	0	logfile

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