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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Qi8 | 4552 | 2023-11-16 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.27 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | 9.9 | 0.003 | 0.85 | 0.0 | 0.04 | 17.56 | 0.00 | 2.143 | 15.66 | 0.19 | 7.7 | 92.3 | 0.0 | -2.16 | 1.53 | 0.32 | 0.22 | 0.51 | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6QJP | 4565 | 2023-11-13 | 2019-01-24 | 3.5 | 3.64 | 2.32 | 4.1 | 0.009 | 1.01 | 0.0 | 0.07 | 9.52 | 0.01 | 2.605 | 1.16 | 0.00 | 3.2 | 96.8 | 0.0 | -2.50 | 0.37 | 0.74 | 3.05 | 4.2 | 0.004 | 0.77 | 0.0 | 0.05 | 12.80 | 0.00 | 2.338 | 11.00 | 0.00 | 4.3 | 95.7 | 0.0 | -3.48 | 1.60 | 0.32 | 0.73 | 4.73 | 816 | 105 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DLU | 7957 | 2023-11-15 | 2018-06-02 | 3.75 | 3.84 | — | 3.8 | 0.009 | 0.95 | 0.0 | 0.05 | 9.95 | 0.00 | 1.944 | 12.48 | 0.23 | 5.7 | 94.3 | 0.0 | -2.78 | 0.31 | 0.77 | 1.09 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.80 | 0.00 | 1.956 | 8.82 | 0.08 | 4.9 | 95.1 | 0.0 | 0.13 | 2.20 | 0.32 | 0.81 | 1.20 | 11991 | 1481 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7U10 | 26273 | 2023-11-13 | 2022-02-19 | 3.0 | 3.45 | — | 4.3 | 0.004 | 0.64 | 0.0 | 0.05 | 14.04 | 0.00 | 2.230 | 10.70 | 0.00 | 6.8 | 93.2 | 0.0 | -2.82 | 0.37 | 0.64 | 3.73 | 4.2 | 0.003 | 0.63 | 0.0 | 0.06 | 16.54 | 0.00 | 2.217 | 9.82 | 2.91 | 5.5 | 94.5 | 0.0 | -3.08 | 2.75 | 0.32 | 0.71 | 3.20 | 3429 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2023-11-16 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 10.01 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 12.92 | 0.01 | 2.069 | 15.85 | 0.36 | 4.4 | 95.5 | 0.2 | -1.00 | 1.62 | 0.32 | 0.20 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 7QKH | 14042 | 2023-11-13 | 2021-12-17 | 3.17 | 3.37 | 2.07 | 3.5 | 0.011 | 2.48 | 5.0 | 0.19 | 15.22 | 0.01 | 2.470 | 1.29 | 0.00 | 14.6 | 85.4 | 0.0 | -3.56 | 0.37 | 0.74 | 3.98 | 3.5 | 0.003 | 0.96 | 0.0 | 0.22 | 15.30 | 0.00 | 2.124 | 7.42 | 0.00 | 5.2 | 94.8 | 0.0 | -2.68 | 2.29 | 0.32 | 0.70 | 4.11 | 3105 | 204 | 6 | 0 | 0 | 0 | 1593 | logfile |
✔ | 8Q9o | 18287 | 2023-11-14 | 2023-08-20 | 3.1 | 3.14 | 2.95 | 3.1 | 0.012 | 1.87 | 0.0 | 0.09 | 11.25 | 0.01 | 2.518 | 0.28 | 3.03 | 3.0 | 97.0 | 0.0 | -1.40 | 0.32 | 0.80 | 5.39 | 3.1 | 0.003 | 0.59 | 0.0 | 0.05 | 13.90 | 0.00 | 2.051 | 4.41 | 0.25 | 2.7 | 97.3 | 0.0 | -1.16 | 3.55 | 0.32 | 0.81 | 5.30 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 8DWJ | 27756 | 2023-11-13 | 2022-08-01 | 3.9 | 3.19 | 3.82 | 3.1 | 0.005 | 1.05 | 0.0 | 0.06 | 15.49 | 0.01 | 2.218 | 13.71 | 0.33 | 5.9 | 94.1 | 0.0 | -2.71 | 0.33 | 0.57 | 0.88 | 3.1 | 0.003 | 0.72 | 0.0 | 0.05 | 17.63 | 0.01 | 2.225 | 19.40 | 0.00 | 6.8 | 93.2 | 0.0 | -1.57 | 2.76 | 0.32 | 0.57 | 0.80 | 3043 | 339 | 3 | 11 | 2 | 0 | 0 | logfile |
✔ | 8H9G | 34566 | 2023-11-13 | 2022-10-25 | 2.95 | 3.31 | 3.17 | 3.3 | 0.008 | 0.77 | 0.0 | 0.05 | 14.93 | 0.01 | 2.278 | 10.74 | 0.00 | 5.8 | 94.2 | 0.0 | -2.39 | 0.34 | 0.81 | 2.01 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 17.92 | 0.00 | 2.128 | 8.05 | 3.38 | 4.1 | 95.9 | 0.0 | 2.24 | 0.91 | 0.33 | 0.81 | 1.89 | 3381 | 421 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JMT | 36426 | 2023-11-13 | 2023-06-05 | 3.3 | 3.55 | 3.41 | 3.7 | 0.003 | 0.74 | 0.0 | 0.04 | 14.38 | 0.00 | 2.204 | 8.56 | 0.00 | 3.5 | 96.5 | 0.0 | -0.01 | 0.35 | 0.59 | 1.38 | 3.7 | 0.004 | 0.65 | 0.0 | 0.04 | 16.13 | 0.00 | 2.238 | 11.67 | 0.00 | 4.0 | 96.0 | 0.0 | 1.51 | 1.16 | 0.33 | 0.61 | 0.92 | 1894 | 234 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Q7T | 18233 | 2023-11-15 | 2023-08-17 | 3.0 | 2.38 | 2.99 | 3.1 | 0.011 | 1.80 | 0.0 | 0.09 | 12.35 | 0.01 | 2.480 | 0.10 | 0.18 | 2.4 | 97.6 | 0.0 | -1.65 | 0.27 | 0.65 | 4.83 | 3.0 | 0.003 | 0.57 | 0.0 | 0.05 | 16.68 | 0.00 | 2.070 | 5.56 | 2.29 | 2.7 | 97.3 | 0.0 | -1.43 | 1.53 | 0.33 | 0.82 | 4.46 | 10083 | 654 | 9 | 0 | 0 | 0 | 5136 | logfile |
✔ | 5GAK | 3227 | 2023-11-18 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 20.85 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 4.0 | 0.003 | 0.83 | 0.0 | 0.04 | 19.62 | 0.01 | 1.977 | 24.30 | 0.53 | 9.4 | 90.1 | 0.4 | -2.72 | 1.99 | 0.33 | 0.25 | 0.07 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 6L4S | 0833 | 2023-11-13 | 2019-10-21 | 3.37 | 3.47 | — | 4.0 | 0.014 | 1.36 | 0.0 | 0.09 | 10.28 | 0.01 | 2.408 | 7.28 | 0.00 | 5.7 | 94.3 | 0.0 | -3.73 | 0.28 | 0.67 | 4.12 | 4.1 | 0.005 | 0.79 | 0.0 | 0.05 | 15.37 | 0.00 | 2.237 | 13.28 | 0.88 | 10.1 | 89.9 | 0.0 | -3.47 | 3.12 | 0.33 | 0.72 | 1.68 | 2268 | 330 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJM | 4564 | 2023-11-13 | 2019-01-24 | 3.3 | 3.49 | 1.95 | 3.4 | 0.010 | 1.01 | 0.0 | 0.07 | 8.06 | 0.01 | 2.408 | 6.17 | 0.00 | 9.1 | 90.9 | 0.0 | -2.36 | 0.38 | 0.76 | 3.31 | 3.5 | 0.003 | 0.57 | 0.0 | 0.05 | 13.66 | 0.00 | 2.146 | 4.49 | 0.00 | 5.1 | 94.9 | 0.0 | -2.42 | 1.59 | 0.33 | 0.73 | 2.58 | 846 | 111 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZFW | 14704 | 2023-11-15 | 2022-04-01 | 3.8 | 4.62 | 3.46 | 3.0 | 0.006 | 0.83 | 0.0 | 0.05 | 17.97 | 0.03 | 2.266 | 2.77 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.32 | 0.81 | — | 3.0 | 0.008 | 0.86 | 0.0 | 0.04 | 20.23 | 0.01 | 1.951 | 37.51 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.54 | 0.33 | 0.85 | — | 13188 | 0 | 1 | 615 | 0 | 0 | 0 | logfile |
✔ | 7U13 | 26276 | 2023-11-13 | 2022-02-19 | 2.9 | 3.67 | — | 4.2 | 0.018 | 2.43 | 0.0 | 0.07 | 16.46 | 0.01 | 2.120 | 29.95 | 6.30 | 11.3 | 88.0 | 0.8 | -3.06 | 0.30 | 0.47 | 1.37 | 4.2 | 0.005 | 1.02 | 0.0 | 0.06 | 17.50 | 0.00 | 2.138 | 20.90 | 3.94 | 11.8 | 88.2 | 0.0 | -4.59 | 6.73 | 0.33 | 0.57 | 1.35 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7NCK | 12269 | 2023-11-13 | 2021-01-28 | 3.18 | 3.22 | 2.86 | 3.4 | 0.011 | 2.19 | 6.0 | 0.10 | 11.66 | 0.01 | 2.583 | 0.37 | 3.33 | 4.0 | 96.0 | 0.0 | -2.54 | 0.39 | 0.71 | 4.89 | 3.4 | 0.003 | 0.58 | 0.0 | 0.05 | 15.74 | 0.00 | 2.151 | 7.19 | 0.37 | 4.3 | 95.7 | 0.0 | -2.05 | 0.92 | 0.33 | 0.71 | 2.63 | 5430 | 384 | 6 | 0 | 0 | 0 | 2778 | logfile |
✔ | 7XMX | 33307 | 2023-11-20 | 2022-04-27 | 3.62 | 3.63 | 3.44 | 22.0 | 0.012 | 1.30 | 7.0 | 0.09 | 12.55 | 0.01 | 1.407 | 4.82 | 1.34 | 6.6 | 93.3 | 0.1 | -0.95 | 0.29 | 0.01 | 0.23 | 20.0 | 0.003 | 0.70 | 0.0 | 0.04 | 14.46 | 0.00 | 2.060 | 11.54 | 0.19 | 5.7 | 94.2 | 0.1 | -1.12 | 1.15 | 0.33 | 0.16 | 0.18 | 28727 | 3700 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 7RTo | 24685 | 2023-11-14 | 2021-08-13 | 3.8 | 3.83 | — | 3.8 | 0.004 | 0.82 | 0.0 | 0.05 | 14.32 | 0.00 | 2.200 | 8.55 | 0.16 | 5.6 | 94.4 | 0.0 | 1.09 | 0.32 | 0.76 | 2.41 | 3.8 | 0.002 | 0.64 | 0.0 | 0.04 | 16.57 | 0.00 | 2.236 | 7.92 | 0.16 | 5.3 | 94.7 | 0.0 | 1.56 | 0.51 | 0.33 | 0.78 | 1.86 | 6607 | 888 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TJo | 10512 | 2023-11-13 | 2019-11-26 | 3.2 | 3.43 | 2.57 | 3.5 | 0.013 | 1.18 | 0.0 | 0.07 | 9.67 | 0.01 | 2.394 | 2.20 | 0.00 | 12.7 | 87.3 | 0.0 | -4.63 | 0.36 | 0.76 | 4.64 | 3.5 | 0.003 | 0.74 | 0.0 | 0.05 | 12.71 | 0.00 | 2.308 | 6.81 | 0.00 | 5.4 | 94.6 | 0.0 | -3.46 | 1.41 | 0.34 | 0.75 | 4.46 | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |