Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GWE	34310	2023-04-26	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	17.61	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	10.1	0.003	0.74	0.0	0.04	17.58	0.00	1.950	15.89	3.34	8.5	91.3	0.2	-1.91	1.11	0.44	0.22	0.12	22040	2668	15	56	10	1	0	logfile
✔	7XQ2	33389	2023-04-20	2022-05-06	3.3	3.45	3.15	3.5	0.007	0.79	1.0	0.05	15.54	0.01	2.244	6.48	0.85	3.7	96.3	0.0	-6.96	0.56	0.83	4.29	3.5	0.003	0.58	0.0	0.04	16.35	0.00	2.217	8.10	0.00	3.0	97.0	0.0	0.34	2.06	0.44	0.78	3.44	3377	409	1	0	2	0	0	logfile
✔	8B3J	15830	2023-04-20	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.52	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.003	0.57	0.0	0.04	16.23	0.00	2.139	6.53	0.00	6.9	93.1	0.0	-2.36	0.23	0.44	0.87	2.72	5688	718	3	0	0	0	0	logfile
✔	8DFo	27409	2023-04-26	2022-06-22	3.1	3.40	3.29	7.2	0.022	1.64	93.0	0.16	17.81	0.01	1.724	6.88	0.57	4.8	95.2	0.0	-0.44	0.27	0.07	0.22	3.4	0.003	0.75	0.0	0.04	17.28	0.01	2.086	17.82	0.12	4.2	95.8	0.0	-0.71	1.86	0.44	0.39	0.56	23861	2912	13	45	0	0	0	logfile
✔	6DZY	8942	2023-04-20	2018-07-05	4.1	4.52	4.39	4.6	0.015	0.95	4.0	0.17	8.53	0.01	1.386	9.20	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.003	0.77	0.0	0.04	13.01	0.00	2.195	16.87	0.00	4.8	95.1	0.1	-0.54	1.88	0.44	0.68	—	7842	988	6	0	4	0	0	logfile
✔	5U4J	8506	2023-04-22	2016-12-04	3.7	3.88	3.59	3.9	0.009	1.21	2.0	0.10	17.20	0.02	1.797	3.02	2.82	5.7	93.9	0.4	-2.95	0.42	0.80	2.24	3.8	0.006	0.81	0.0	0.04	16.64	0.01	2.110	17.13	1.41	5.3	94.5	0.2	-1.41	0.66	0.44	0.79	1.64	11360	524	10	339	0	0	0	logfile
✔	7VNP	32044	2023-04-23	2021-10-11	2.79	2.90	—	3.5	0.014	1.69	0.0	0.07	19.42	0.02	2.052	13.64	7.99	6.0	93.6	0.4	-0.27	0.47	0.70	2.46	3.4	0.003	0.65	0.0	0.04	17.37	0.00	2.101	10.89	2.72	2.7	97.1	0.2	1.62	0.88	0.44	0.72	2.46	14656	1904	12	0	16	0	0	logfile
✔	6oGZ	20060	2023-04-28	2019-04-03	3.6	3.85	—	3.8	0.008	0.90	0.0	0.06	15.82	0.01	2.244	5.40	0.17	4.2	95.8	0.0	-5.51	0.47	0.86	2.42	3.8	0.002	0.60	0.0	0.04	17.26	0.00	2.036	9.18	0.37	2.7	97.3	0.0	-1.75	1.44	0.44	0.85	1.69	74962	9081	14	35	2	0	0	logfile
✔	8F7J	28905	2023-04-20	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile
✔	7PQQ	13596	2023-04-19	2021-09-18	3.3	3.44	—	3.5	0.004	0.69	0.0	0.04	14.02	0.00	2.244	12.20	0.00	4.6	95.4	0.0	-2.50	0.44	0.73	3.02	3.4	0.003	0.69	0.0	0.04	16.11	0.00	2.206	9.92	0.00	3.6	96.4	0.0	-1.59	0.48	0.44	0.75	2.63	3207	417	2	0	0	0	0	logfile
✔	7E2X	30971	2023-04-20	2021-02-07	3.0	3.88	—	3.9	0.010	1.07	0.0	0.21	12.34	0.01	2.008	4.11	0.00	1.5	98.5	0.0	2.48	0.44	0.60	1.55	3.8	0.003	0.63	0.0	0.04	15.18	0.00	2.169	7.73	2.83	3.0	97.0	0.0	1.38	1.55	0.44	0.62	1.42	7226	870	4	0	14	9	0	logfile
✔	7TZ0	26201	2023-04-19	2022-02-15	4.17	3.79	—	4.4	0.003	0.62	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.0	0.004	0.77	0.0	0.05	12.39	0.00	2.106	22.26	0.35	12.2	87.8	0.0	-2.19	1.41	0.44	0.64	—	2674	347	2	0	0	0	0	logfile
✔	7XQ0	33387	2023-04-20	2022-05-06	3.0	2.77	3.09	3.2	0.018	1.35	0.0	0.05	13.28	0.01	2.232	7.04	0.86	1.5	98.5	0.0	-6.72	0.49	0.79	4.03	3.2	0.004	1.01	0.0	0.04	14.73	0.00	2.177	8.39	2.02	1.5	98.5	0.0	0.86	1.49	0.44	0.77	2.86	3320	402	1	0	2	0	0	logfile
✔	7S4M	24831	2023-04-26	2021-09-09	2.42	3.75	—	3.8	0.007	0.93	2.0	0.05	18.77	0.01	2.015	13.81	6.06	5.5	94.0	0.4	-0.17	0.37	0.60	2.25	3.8	0.003	0.65	0.0	0.04	17.84	0.01	2.084	12.56	4.22	6.2	93.8	0.0	-0.44	0.65	0.44	0.73	2.21	21729	2619	31	0	84	36	0	logfile
✔	6X16	21990	2023-04-21	2020-05-18	3.39	3.34	—	3.4	0.006	0.99	0.0	0.05	14.76	0.01	2.322	3.97	0.31	4.8	95.2	0.0	-3.86	0.40	0.73	1.79	3.4	0.003	0.57	0.0	0.04	15.13	0.00	2.199	8.19	0.10	3.5	96.5	0.0	0.74	1.12	0.45	0.77	1.41	9438	1248	6	0	6	0	0	logfile
✔	8E2J	27838	2023-04-20	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.53	0.0	0.03	17.85	0.00	1.995	13.05	0.00	1.2	98.8	0.0	3.38	1.71	0.45	0.67	1.22	6012	346	4	0	114	0	2694	logfile
✔	8GoE	34176	2023-04-20	2022-08-24	3.0	3.01	3.02	3.1	0.006	0.76	1.0	0.05	12.65	0.01	2.273	6.40	0.57	2.0	98.0	0.0	-6.19	0.46	0.82	4.16	3.1	0.003	0.63	1.0	0.04	14.15	0.00	2.175	7.73	1.70	2.5	97.5	0.0	0.94	0.42	0.45	0.83	3.08	3323	407	1	0	1	0	0	logfile
✔	6XDC	22136	2023-04-19	2020-06-10	2.9	3.80	—	3.7	0.006	0.79	0.0	0.06	13.65	0.01	2.279	4.95	1.15	4.0	96.0	0.0	-2.72	0.47	0.71	3.58	3.7	0.003	0.60	0.0	0.04	15.30	0.00	2.197	9.57	2.59	3.7	96.3	0.0	0.98	1.70	0.45	0.69	3.50	3150	386	2	0	0	0	0	logfile
✔	7M3N	23658	2023-04-20	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	2.0	0.002	0.55	0.0	0.04	16.96	0.00	2.273	6.81	2.75	3.7	96.3	0.0	-0.46	0.48	0.45	0.84	4.74	6004	759	3	0	0	0	0	logfile
✔	6YAM	10761	2023-04-23	2020-03-12	3.6	3.47	—	3.5	0.021	2.06	55.0	0.12	15.03	0.02	0.634	17.64	3.01	10.8	85.2	4.0	-4.49	0.39	0.52	0.80	3.4	0.003	0.74	0.0	0.04	16.51	0.00	2.048	11.35	0.48	9.5	90.2	0.3	-1.76	1.54	0.45	0.63	1.12	118536	9811	51	1863	5	0	0	logfile

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