Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K8D	22728	2023-07-06	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.80	0.0	0.04	13.50	0.01	2.094	15.68	0.00	4.9	95.1	0.0	0.82	1.46	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	7FFN	31569	2023-07-04	2021-07-23	3.0	3.15	—	3.1	0.007	0.95	0.0	0.06	9.73	0.01	1.924	5.72	0.53	6.6	93.3	0.1	-3.00	0.39	0.80	3.34	3.1	0.004	0.70	0.0	0.05	14.57	0.01	2.170	8.25	2.55	5.8	94.2	0.0	-0.56	2.02	0.41	0.88	3.17	8589	1112	6	0	1	0	0	logfile
✔	6TZ2	20587	2023-07-07	2019-08-09	3.5	3.68	—	3.6	0.009	0.95	0.0	0.05	11.67	0.01	2.073	5.14	0.47	5.3	94.6	0.1	-3.55	0.40	0.85	3.02	3.6	0.003	0.61	0.0	0.04	15.42	0.00	1.862	10.42	0.60	4.2	95.8	0.0	-0.02	0.69	0.41	0.86	2.08	15608	1709	6	90	4	0	0	logfile
✔	8D43	27173	2023-07-04	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	18.27	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.2	0.004	0.84	0.0	0.05	18.51	0.01	2.058	18.77	3.10	5.2	94.7	0.1	-1.45	2.71	0.41	0.35	0.56	7763	962	5	0	6	1	0	logfile
✔	7FBi	31515	2023-07-04	2021-07-10	3.9	4.51	—	4.4	0.007	1.18	3.0	0.07	15.51	0.01	2.095	10.67	0.35	14.6	85.3	0.1	-5.16	0.40	0.79	1.90	4.4	0.005	0.86	0.0	0.05	16.65	0.00	2.125	18.48	0.81	14.3	85.7	0.0	-3.69	0.65	0.41	0.79	1.98	7777	1005	5	0	0	0	0	logfile
✔	6DU8	8912	2023-07-06	2018-06-20	3.11	3.84	—	3.8	0.007	1.14	0.0	0.08	12.57	0.01	2.046	7.99	0.89	8.8	91.2	0.0	-4.81	0.39	0.59	3.01	3.8	0.004	0.82	0.0	0.05	15.41	0.00	2.067	12.36	0.07	9.7	90.3	0.0	-1.96	0.58	0.41	0.62	2.19	13380	1684	8	0	4	0	0	logfile
✔	6V6C	21068	2023-07-03	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.4	0.003	0.67	0.0	0.04	14.26	0.00	2.222	6.48	0.23	4.7	95.3	0.0	-0.11	2.03	0.42	0.81	—	4007	497	1	0	0	0	0	logfile
✔	8CK1	16689	2023-07-06	2023-02-14	3.9	3.75	3.90	3.8	0.004	0.75	0.0	0.05	16.95	0.00	2.200	15.75	0.59	8.4	91.6	0.0	-2.07	0.42	0.81	1.48	3.8	0.003	0.70	0.0	0.05	17.90	0.00	2.215	14.33	0.30	9.0	91.0	0.0	-1.64	0.55	0.42	0.81	1.82	12580	1616	6	0	0	0	0	logfile
✔	6PLP	20371	2023-07-07	2019-07-01	3.3	3.51	—	3.8	0.002	0.53	0.0	0.05	7.12	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.6	0.003	0.64	0.0	0.04	13.56	0.00	2.129	9.93	0.19	3.4	96.6	0.0	-0.70	1.66	0.42	0.72	2.82	14240	1730	15	0	20	0	0	logfile
✔	7K8A	22724	2023-07-06	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.003	0.78	0.0	0.04	15.86	0.01	2.225	15.74	0.34	4.6	95.3	0.1	-0.56	0.46	0.42	0.55	0.22	5513	723	1	0	0	0	0	logfile
✔	7K8B	22725	2023-07-03	2020-09-26	2.94	2.86	—	3.1	0.005	0.83	2.0	0.05	14.13	0.01	2.214	14.30	0.68	5.5	94.5	0.0	-0.97	0.41	0.61	1.17	3.1	0.005	0.89	0.0	0.05	17.17	0.01	2.075	18.75	5.07	6.4	93.6	0.0	-0.82	1.19	0.42	0.65	0.86	5543	726	1	0	0	0	0	logfile
✔	7AGX	11780	2023-07-19	2020-09-23	3.6	3.61	3.52	3.6	0.007	0.80	0.0	0.05	12.34	0.01	1.903	2.70	0.08	1.1	98.9	0.0	-2.48	0.42	0.79	3.60	3.6	0.003	0.57	0.0	0.03	15.43	0.00	1.965	5.95	0.19	1.9	98.1	0.0	2.38	0.92	0.42	0.79	2.16	47749	3031	33	0	0	0	24089	logfile
✔	6LZ0	30020	2023-07-03	2020-02-16	3.3	4.24	—	4.2	0.008	1.17	10.0	0.09	15.05	0.01	2.126	17.43	5.25	11.1	88.7	0.2	-4.02	0.46	0.61	1.68	4.2	0.005	0.85	0.0	0.05	16.27	0.01	2.131	10.57	0.62	6.3	93.7	0.0	-0.59	1.29	0.42	0.69	1.90	4006	591	3	0	1	0	0	logfile
✔	6U5H	20646	2023-07-04	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.003	0.78	0.0	0.04	15.63	0.00	2.120	18.93	0.64	10.2	89.8	0.0	-4.46	0.95	0.42	0.69	—	7326	954	3	0	0	0	0	logfile
✔	6W2D	21525	2023-07-12	2020-03-05	4.0	4.10	—	4.0	0.006	0.74	0.0	0.05	13.33	0.01	1.362	15.60	5.51	5.0	94.6	0.4	-2.57	0.34	0.54	—	4.0	0.005	0.86	0.0	0.05	16.99	0.01	2.025	17.88	0.82	6.9	93.1	0.1	-1.36	1.72	0.42	0.79	—	74272	9430	21	0	0	0	0	logfile
✔	7EGB	31111	2023-07-05	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.43	0.01	1.322	21.13	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.006	0.97	0.0	0.05	16.75	0.01	1.840	21.35	0.38	8.6	91.2	0.2	-1.17	1.17	0.43	0.22	0.25	113098	13887	63	138	18	0	0	logfile
✔	8HiQ	34826	2023-07-03	2022-11-21	3.2	3.35	3.10	3.3	0.005	0.74	0.0	0.04	15.96	0.01	2.284	14.48	0.00	3.9	96.1	0.0	1.52	0.43	0.77	2.29	3.3	0.003	0.58	0.0	0.04	16.76	0.01	2.272	14.79	0.00	3.6	96.4	0.0	1.72	1.06	0.43	0.78	2.24	3274	416	1	0	1	0	0	logfile
✔	6MLU	9146	2023-07-03	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.16	0.0	0.06	17.79	0.01	2.194	31.82	1.39	15.2	84.8	0.0	-2.34	3.45	0.43	0.76	—	2516	306	2	0	0	0	0	logfile
✔	6JC3	9793	2023-07-04	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	15.57	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.004	0.77	0.0	0.04	13.92	0.00	2.100	14.75	0.00	6.5	93.5	0.0	0.86	4.22	0.43	0.81	—	3154	391	2	6	0	0	0	logfile
✔	6oEG	20020	2023-07-09	2019-03-27	3.8	3.93	—	3.9	0.008	1.12	0.0	0.06	13.46	0.01	2.370	5.57	5.56	8.1	91.9	0.0	-4.92	0.42	0.79	3.01	3.9	0.004	0.82	0.0	0.05	15.80	0.00	2.022	10.49	0.55	8.2	91.8	0.0	-1.28	0.93	0.43	0.78	2.38	18564	2268	14	0	0	0	0	logfile

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