Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	4V1A	2787	2022-12-16	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.20	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.003	0.69	0.0	0.04	16.83	0.00	2.076	10.41	0.15	4.3	95.6	0.1	0.54	1.91	0.38	0.78	1.67	31917	3843	24	0	94	0	0	logfile
✔	7X84	33055	2022-12-11	2022-03-11	3.0	3.07	2.65	3.2	0.008	0.83	0.0	0.06	13.87	0.00	2.259	11.21	0.00	10.3	89.7	0.0	-5.69	0.40	0.84	3.98	3.2	0.004	0.82	0.0	0.05	17.63	0.00	2.117	11.37	2.91	7.0	93.0	0.0	-3.58	2.64	0.38	0.84	3.18	3258	405	3	0	0	0	0	logfile
✔	6CU7	7618	2022-12-11	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.004	0.67	0.0	0.05	14.08	0.00	2.215	17.37	0.71	13.1	86.9	0.0	-4.59	1.76	0.38	0.72	1.68	4140	600	10	0	0	0	0	logfile
✔	6oGY	20059	2022-12-15	2019-04-03	3.4	3.58	—	3.7	0.006	0.79	0.0	0.05	15.72	0.01	2.283	3.57	0.18	3.8	96.1	0.0	-5.60	0.41	0.85	2.69	3.7	0.006	0.64	0.0	0.05	17.40	0.00	2.151	6.82	0.68	4.4	95.6	0.0	-2.60	1.58	0.38	0.85	2.19	74364	9081	13	6	1	0	0	logfile
✔	6QD2	4517	2022-12-14	2018-12-31	4.8	4.92	5.87	4.9	0.006	0.86	0.0	0.04	9.04	0.01	2.025	6.53	0.00	11.6	88.4	0.0	-4.60	0.35	0.62	—	4.9	0.003	0.67	0.0	0.04	10.89	0.00	2.082	12.37	0.00	8.9	91.1	0.0	-1.23	1.11	0.39	0.65	—	21746	1420	5	0	2	0	11100	logfile
✔	7QKY	14057	2022-12-11	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.003	0.69	0.0	0.05	16.56	0.00	2.218	4.85	0.61	6.2	93.8	0.0	-3.18	1.00	0.39	0.84	7.35	5760	396	6	0	0	0	2862	logfile
✔	7C1D	30269	2022-12-11	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.90	0.00	2.239	18.63	0.52	24.5	75.5	0.0	-4.57	2.82	0.39	0.75	2.42	2034	306	6	0	0	0	0	logfile
✔	5VZL	8749	2022-12-13	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.76	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.003	0.68	0.0	0.04	15.78	0.00	1.238	14.34	0.50	5.8	94.2	0.0	-1.59	1.27	0.39	0.19	0.68	13915	1451	3	115	1	0	0	logfile
✔	8BC1	15959	2022-12-12	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.004	0.80	0.0	0.05	15.62	0.01	2.021	15.81	1.50	3.8	96.2	0.0	0.65	1.05	0.39	0.54	1.25	8684	1054	4	0	6	0	0	logfile
✔	7LiV	23386	2022-12-22	2021-01-28	3.6	3.63	—	3.6	0.009	0.95	1.0	0.05	13.49	0.01	1.080	27.01	2.97	4.9	94.5	0.6	-3.03	0.24	0.49	0.16	3.6	0.005	0.85	0.0	0.05	17.32	0.01	2.038	15.21	1.12	6.1	93.9	0.1	-1.34	1.79	0.39	0.82	1.44	47058	5903	12	0	0	0	0	logfile
✔	7V4C	31707	2022-12-11	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.003	0.61	0.0	0.05	17.76	0.00	2.159	3.79	0.76	7.8	92.2	0.0	-4.65	1.18	0.39	0.82	3.35	1287	186	3	0	0	0	0	logfile
✔	7QWL	14188	2022-12-11	2022-01-25	3.47	3.11	2.99	3.5	0.012	2.27	14.0	0.13	13.78	0.01	2.501	4.15	1.06	11.3	88.2	0.5	-3.35	0.45	0.81	5.36	3.4	0.007	0.84	0.0	0.05	15.70	0.00	2.069	12.44	1.06	14.3	85.7	0.0	-3.21	2.77	0.39	0.82	4.61	3258	405	3	0	0	0	0	logfile
✔	7CG0	30348	2022-12-12	2020-06-30	3.2	3.51	—	3.5	0.003	0.53	0.0	0.04	11.23	0.00	1.992	8.37	2.56	3.0	97.0	0.0	3.52	0.37	0.79	1.26	3.5	0.003	0.70	0.0	0.04	15.87	0.00	2.077	10.72	0.79	3.0	97.0	0.0	2.99	0.86	0.39	0.83	1.16	10928	1412	21	0	75	0	0	logfile
✔	7N5G	24189	2022-12-11	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.34	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.56	0.0	0.04	16.74	0.00	2.228	4.78	2.28	1.4	98.6	0.0	2.95	1.21	0.39	0.80	2.58	2926	371	1	0	1	0	0	logfile
✔	7DNL	30787	2022-12-14	2020-12-09	4.19	4.89	—	4.7	0.005	1.03	0.0	0.06	14.88	0.01	1.747	6.70	0.57	7.3	92.6	0.1	-4.29	0.38	0.78	—	4.7	0.006	0.81	0.0	0.05	13.71	0.01	2.017	21.44	0.04	9.7	90.3	0.0	-2.52	0.74	0.39	0.79	—	21847	2769	7	0	0	0	0	logfile
✔	5ANC	3147	2022-12-21	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.63	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.004	0.83	0.0	0.04	17.25	0.01	2.031	20.61	0.00	14.5	84.5	1.0	-3.66	1.57	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✔	7RL4	24514	2022-12-11	2021-07-23	2.86	2.50	—	3.1	0.015	1.16	0.0	0.07	16.04	0.01	2.535	12.04	0.00	12.5	87.5	0.0	-4.62	0.39	0.82	4.55	3.0	0.012	1.00	0.0	0.05	17.03	0.01	2.258	17.96	4.75	7.8	92.2	0.0	-4.76	1.13	0.39	0.84	4.87	4620	680	20	0	0	0	0	logfile
✔	7QKi	14043	2022-12-11	2021-12-17	3.13	3.29	3.04	3.2	0.011	1.99	3.0	0.10	9.18	0.01	2.508	0.99	0.00	10.1	89.9	0.0	-1.50	0.41	0.79	6.28	3.3	0.004	0.63	0.0	0.05	11.99	0.00	2.081	5.38	0.00	5.2	94.8	0.0	-1.91	0.77	0.39	0.81	5.46	7074	456	6	0	0	0	3606	logfile
✔	7SP1	25364	2022-12-11	2021-11-02	3.4	3.65	—	3.9	0.006	1.29	0.0	0.07	19.39	0.01	2.288	13.34	0.00	2.9	97.1	0.0	-2.42	0.41	0.72	4.86	4.1	0.005	0.87	0.0	0.05	19.75	0.01	2.072	19.29	0.20	14.9	85.1	0.0	-4.13	1.70	0.39	0.75	4.00	4343	540	17	20	0	0	0	logfile
✔	6C4H	7340	2022-12-13	2018-01-12	3.1	3.33	—	3.3	0.011	1.19	1.0	0.11	16.68	0.05	1.913	7.76	6.80	5.3	94.7	0.0	-2.61	0.43	0.85	3.61	3.3	0.008	0.92	0.0	0.04	15.73	0.01	1.777	7.89	0.68	7.0	93.0	0.0	-2.37	0.39	0.39	0.85	4.75	15326	184	8	648	34	0	0	logfile

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