Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ELH	31183	2023-08-12	2021-04-11	3.3	3.97	—	3.7	0.006	0.82	1.0	0.05	12.97	0.00	1.043	9.19	0.21	3.9	96.1	0.1	0.36	0.35	0.69	3.16	3.6	0.003	0.51	0.0	0.04	14.69	0.00	1.859	28.25	0.29	3.7	96.3	0.0	1.24	1.15	0.38	0.89	2.53	114995	13378	27	310	1	0	3098	logfile
✔	6oGY	20059	2023-08-18	2019-04-03	3.4	3.58	—	3.7	0.006	0.79	0.0	0.05	15.76	0.01	2.283	3.56	0.18	3.8	96.1	0.0	-5.60	0.41	0.85	2.69	3.7	0.003	0.60	0.0	0.04	17.37	0.00	2.182	6.30	0.55	3.3	96.7	0.0	-2.25	1.16	0.38	0.85	2.09	74364	9081	13	6	1	0	0	logfile
✔	6L31	0816	2023-08-16	2019-10-07	4.18	4.92	—	4.8	0.007	1.26	7.0	0.07	16.23	0.01	1.738	16.77	2.27	11.7	88.0	0.3	-4.45	0.38	0.72	—	4.9	0.005	0.86	0.0	0.05	14.12	0.01	1.950	28.23	0.04	12.5	87.4	0.1	-3.26	2.40	0.38	0.72	—	20905	2670	6	0	0	0	0	logfile
✔	3J2P	5499	2023-08-11	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.56	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.89	0.0	0.04	17.84	0.00	1.911	69.53	1.47	18.7	77.9	3.4	-4.26	0.93	0.38	0.72	0.85	9890	1134	8	0	6	0	1086	logfile
✔	8H9R	34578	2023-08-09	2022-10-25	3.97	4.28	4.04	4.0	0.006	0.79	0.0	0.05	15.25	0.00	2.244	16.26	0.00	6.1	93.9	0.0	-1.99	0.38	0.80	0.71	4.0	0.003	0.72	0.0	0.04	17.99	0.00	2.273	14.32	1.13	4.1	95.9	0.0	2.13	1.32	0.38	0.79	0.36	3381	421	3	0	0	0	0	logfile
✔	4V1A	2787	2023-08-21	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.17	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.003	0.70	0.0	0.04	16.87	0.00	2.083	10.94	0.29	4.4	95.5	0.1	0.59	1.92	0.38	0.79	1.76	31917	3843	24	0	94	0	0	logfile
✔	7X83	33054	2023-08-09	2022-03-11	3.4	3.15	2.86	3.5	0.009	0.82	0.0	0.06	13.35	0.00	2.217	17.05	0.00	15.8	84.2	0.0	-5.71	0.38	0.84	4.55	3.6	0.004	0.70	0.0	0.05	15.14	0.00	2.247	12.75	0.79	13.3	86.7	0.0	-4.84	0.60	0.39	0.84	4.52	3258	405	3	0	0	0	0	logfile
✔	5AN9	3145	2023-08-24	2015-09-06	3.3	3.29	—	3.3	0.007	1.22	5.0	0.10	17.04	0.01	1.192	3.54	2.32	9.1	88.0	2.9	-3.68	0.38	0.81	1.98	3.3	0.007	0.83	0.0	0.04	17.55	0.01	2.029	13.22	1.16	10.9	88.5	0.6	-2.81	1.54	0.39	0.81	1.46	39693	1905	11	1162	0	0	0	logfile
✔	7RL4	24514	2023-08-09	2021-07-23	2.86	2.50	—	3.1	0.015	1.16	0.0	0.07	16.04	0.01	2.535	12.04	0.00	12.5	87.5	0.0	-4.62	0.39	0.82	4.55	3.1	0.009	0.89	0.0	0.05	16.66	0.00	2.208	17.42	3.00	7.0	93.0	0.0	-4.67	1.13	0.39	0.84	4.85	4620	680	20	0	0	0	0	logfile
✔	5ANC	3147	2023-08-26	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.62	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.005	0.90	0.0	0.05	17.64	0.01	2.064	23.42	0.00	15.3	83.7	1.0	-4.04	1.59	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✔	7QKY	14057	2023-08-09	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.004	0.74	0.0	0.05	16.56	0.00	2.028	5.37	0.61	6.2	93.8	0.0	-3.22	1.00	0.39	0.84	7.47	5760	396	6	0	0	0	2862	logfile
✔	7MDX	23783	2023-08-11	2021-04-06	3.8	4.16	—	4.1	0.004	0.70	1.0	0.05	15.48	0.01	2.228	10.45	0.10	8.4	91.6	0.0	-1.27	0.39	0.72	0.93	4.1	0.003	0.78	0.0	0.05	17.54	0.00	2.075	13.98	0.59	9.2	90.8	0.1	-1.35	0.51	0.39	0.72	0.68	9513	1234	5	0	4	0	0	logfile
✔	7QKM	14047	2023-08-09	2021-12-17	2.66	2.80	2.61	2.7	0.010	1.89	1.0	0.11	12.52	0.01	2.548	0.00	0.00	7.2	92.8	0.0	-1.95	0.42	0.86	6.21	2.7	0.002	0.53	0.0	0.05	16.30	0.00	1.981	4.94	0.68	4.4	95.6	0.0	-1.70	1.31	0.39	0.89	5.83	5070	330	6	0	0	0	2634	logfile
✔	5ANB	3146	2023-08-26	2015-09-06	4.1	4.11	—	4.1	0.008	1.32	6.0	0.10	18.54	0.01	1.245	5.12	4.33	13.0	83.9	3.1	-4.17	0.41	0.75	—	4.0	0.005	0.85	0.0	0.04	17.23	0.01	1.955	21.18	0.04	14.6	84.7	0.7	-3.65	1.60	0.39	0.70	—	48493	3025	12	1162	0	0	0	logfile
✔	7ZSD	14930	2023-08-09	2022-05-06	3.29	3.62	3.56	3.6	0.003	0.60	0.0	0.05	14.29	0.00	2.226	9.82	0.00	7.0	93.0	0.0	-0.09	0.38	0.74	2.01	3.6	0.003	0.66	0.0	0.05	14.79	0.00	2.257	12.46	0.90	7.0	93.0	0.0	-0.57	0.39	0.39	0.78	1.13	2120	261	3	0	2	0	0	logfile
✔	8BG9	16027	2023-08-09	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.0	0.006	0.76	0.0	0.05	15.60	0.00	2.264	7.60	0.00	10.5	89.5	0.0	-4.03	0.99	0.39	0.81	5.60	1692	222	6	0	0	0	0	logfile
✔	7QKi	14043	2023-08-10	2021-12-17	3.13	3.29	3.04	3.2	0.011	1.99	3.0	0.10	9.18	0.01	2.508	0.00	0.00	10.1	89.9	0.0	-1.50	0.41	0.79	6.28	3.3	0.004	0.63	0.0	0.05	11.95	0.00	2.085	5.52	0.00	5.0	95.0	0.0	-1.84	0.77	0.39	0.81	5.60	7074	456	6	0	0	0	3606	logfile
✔	6VW2	21410	2023-08-09	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.004	0.83	0.0	0.05	14.71	0.00	2.227	13.08	0.00	15.5	84.5	0.0	-4.88	0.43	0.39	0.70	1.67	1800	240	10	0	0	0	0	logfile
✔	7E0F	30931	2023-08-09	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.57	0.00	2.397	4.15	0.49	7.8	92.2	0.0	-3.39	1.23	0.39	0.80	3.92	2022	294	6	0	0	0	0	logfile
✔	7N5G	24189	2023-08-09	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile

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