Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D9N	27267	2023-02-18	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.66	0.0	0.04	13.34	0.00	2.212	4.39	0.00	4.6	95.4	0.0	0.37	0.56	0.40	-0.02	—	7186	902	2	0	0	0	0	logfile
✔	6RJU	4906	2023-02-16	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	6M71	11007	2023-02-18	2020-03-16	2.9	3.22	3.22	51.0	0.003	0.59	0.0	0.04	13.42	0.00	1.966	8.99	0.00	4.2	95.8	0.0	-3.06	0.04	0.02	0.33	3.1	0.004	0.73	0.0	0.04	15.84	0.00	2.163	13.70	3.17	5.0	95.0	0.0	-0.20	1.62	0.06	0.05	-0.05	8614	1085	4	0	0	0	0	logfile
✔	5M6S	3451	2023-02-16	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✔	7EFo	31087	2023-02-18	2021-03-22	3.85	4.26	—	38.0	0.010	1.20	1.0	0.15	17.15	0.01	2.071	58.70	6.18	7.1	92.8	0.1	-2.21	0.11	0.02	-0.28	4.2	0.003	0.76	0.0	0.04	17.43	0.00	2.154	18.19	0.39	6.0	94.0	0.0	-1.06	2.12	0.15	0.09	0.19	7306	916	5	0	1	0	0	logfile
✔	6VYB	22748	2023-02-24	2020-02-25	3.2	3.61	4.19	10.0	0.014	1.36	1.0	0.09	10.35	0.01	2.299	0.53	0.13	2.4	97.5	0.1	0.50	-0.01	-0.01	0.12	3.4	0.003	0.66	0.0	0.05	12.68	0.00	2.123	10.83	0.09	4.0	96.0	0.1	-0.55	1.03	0.03	0.09	0.43	22365	2875	18	0	59	0	0	logfile
✔	6VXX	24693	2023-02-24	2020-02-25	2.8	3.28	2.89	39.0	0.016	1.35	0.0	0.09	10.67	0.01	2.389	0.81	0.23	2.4	97.6	0.0	0.27	0.07	0.00	0.14	2.8	0.003	0.69	0.0	0.05	13.86	0.00	2.095	12.22	2.00	3.9	96.1	0.0	-0.28	1.68	0.14	0.11	0.11	23694	2916	21	0	63	0	0	logfile
✔	6ZGE	23580	2023-02-26	2020-06-18	2.6	2.72	2.67	20.0	0.009	0.91	0.0	0.06	12.46	0.01	2.344	2.22	0.73	4.7	95.2	0.1	-0.97	0.06	0.00	0.14	20.0	0.005	0.78	0.0	0.05	13.62	0.00	2.128	9.50	1.01	4.8	95.2	0.0	-0.90	0.80	0.12	0.12	0.37	26991	3294	39	0	81	48	0	logfile
✔	6UZZ	33318	2023-02-21	2019-11-16	3.1	3.28	3.51	36.0	0.009	0.92	0.0	0.06	10.61	0.01	2.325	2.53	0.24	1.8	98.0	0.2	-4.22	0.02	0.00	0.27	3.1	0.003	0.66	0.0	0.04	14.00	0.00	2.048	10.48	0.12	3.1	96.9	0.0	1.34	2.50	0.07	0.13	-0.03	15832	1984	12	0	8	0	0	logfile
✔	5LNK	4481	2023-02-24	2016-08-04	3.9	3.95	17.72	71.0	0.007	1.05	0.0	1.04	10.85	0.01	2.038	25.42	0.32	12.6	86.9	0.5	-4.85	0.01	0.00	0.13	40.0	0.009	1.71	0.0	0.31	13.69	0.01	1.425	16.41	0.33	10.3	89.5	0.3	-1.27	0.81	0.05	0.14	0.19	63760	7918	61	0	144	0	0	logfile
✔	6CAJ	23209	2023-02-25	2018-01-31	2.8	3.42	—	70.0	0.008	0.88	0.0	0.17	9.84	0.01	1.467	5.88	0.24	4.5	95.5	0.0	-3.63	0.12	0.02	-0.04	2.9	0.003	0.73	0.0	0.04	14.60	0.01	2.063	15.80	3.90	5.9	94.1	0.0	-1.06	1.40	0.15	0.14	0.02	24295	3210	11	0	1	0	0	logfile
✔	6N4B	0745	2023-02-18	2018-11-18	3.0	3.44	—	39.0	0.011	1.40	4.0	0.09	9.55	0.01	1.855	20.11	0.84	2.7	97.3	0.0	-2.27	0.08	0.01	0.16	3.4	0.004	0.81	0.0	0.04	12.42	0.00	2.081	12.08	0.96	5.4	94.6	0.0	-0.45	1.11	0.13	0.14	0.19	8453	1121	6	0	3	0	0	logfile
✔	7SC1	26879	2023-02-27	2021-09-26	3.2	3.82	3.39	20.0	0.006	0.60	0.0	0.05	14.85	0.00	2.169	10.07	0.06	4.0	96.0	0.0	-0.55	0.14	0.01	-0.05	3.3	0.003	0.66	0.0	0.05	16.70	0.00	2.082	13.14	0.37	3.8	96.2	0.0	-0.67	0.87	0.20	0.14	0.03	29415	3705	12	0	45	0	0	logfile
✔	8GWB	34308	2023-02-24	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.74	0.0	0.04	16.77	0.00	2.117	17.29	2.69	7.5	92.4	0.1	-1.54	1.60	0.34	0.15	0.46	21879	2655	16	54	10	7	0	logfile
✔	7CHH	30374	2023-02-26	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.3	0.012	1.20	0.0	0.06	16.17	0.01	1.881	22.73	0.74	8.9	91.0	0.1	-2.21	1.48	0.21	0.15	0.59	29029	3704	17	0	41	0	0	logfile
✔	5MSH	3565	2023-02-17	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.004	0.86	0.0	0.05	12.82	0.01	2.120	16.79	0.00	6.8	93.0	0.2	-1.06	2.67	0.05	0.16	—	4287	551	2	0	0	0	0	logfile
✔	7XMX	33307	2023-02-26	2022-04-27	3.62	3.63	3.44	22.0	0.011	1.29	7.0	0.09	12.50	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	20.0	0.003	0.68	0.0	0.04	14.28	0.00	2.027	11.86	0.35	5.9	94.0	0.1	-1.06	1.13	0.36	0.17	0.19	28727	3700	12	0	24	0	0	logfile
✔	8FD5	29002	2023-02-17	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile
✔	7CZ5	31824	2023-02-18	2020-09-07	2.6	2.14	—	14.0	0.004	0.69	0.0	0.05	13.25	0.00	2.186	6.27	0.00	3.3	96.7	0.0	-2.04	0.25	0.05	0.50	10.0	0.003	0.65	0.0	0.04	15.11	0.00	2.090	14.88	0.78	5.0	95.0	0.0	-0.37	0.85	0.33	0.18	0.67	8336	1046	11	0	3	3	0	logfile
✔	7D77	32838	2023-02-18	2020-10-03	2.9	3.07	—	20.0	0.008	0.78	0.0	0.06	13.51	0.00	2.107	8.48	0.21	3.7	96.3	0.0	-2.58	0.07	0.01	0.37	3.0	0.005	0.85	0.0	0.05	15.51	0.01	2.082	17.53	2.15	5.8	94.1	0.1	-0.58	1.02	0.14	0.18	0.47	8785	1105	7	0	7	1	0	logfile

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