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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7JGF | 22325 | 2023-11-13 | 2020-07-19 | 4.69 | 4.81 | — | 4.8 | 0.002 | 0.62 | 0.0 | 0.04 | 13.16 | 0.01 | 2.109 | 26.74 | 0.41 | 4.6 | 95.4 | 0.0 | -0.87 | 0.39 | 0.43 | — | 4.8 | 0.002 | 0.47 | 0.0 | 0.04 | 13.18 | 0.00 | 2.190 | 46.28 | 0.41 | 4.8 | 95.2 | 0.0 | 1.10 | 0.62 | 0.41 | 0.45 | — | 4477 | 532 | 1 | 0 | 0 | 0 | 30 | logfile |
✔ | 8F7J | 28905 | 2023-11-13 | 2022-11-18 | 4.32 | 4.45 | 4.63 | 8.9 | 0.005 | 0.92 | 0.0 | 0.05 | 15.44 | 0.01 | 2.282 | 15.12 | 0.26 | 5.7 | 94.3 | 0.0 | -3.18 | 0.38 | 0.32 | — | 4.3 | 0.004 | 0.80 | 0.0 | 0.04 | 13.92 | 0.01 | 2.122 | 24.96 | 0.00 | 9.4 | 90.6 | 0.0 | -3.21 | 2.94 | 0.44 | 0.45 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LVT | 23542 | 2023-11-17 | 2021-02-26 | 4.6 | 4.32 | — | 4.0 | 0.008 | 1.36 | 3.0 | 0.09 | 13.04 | 0.01 | 2.057 | 6.40 | 0.96 | 6.4 | 93.3 | 0.3 | -2.96 | 0.68 | 0.65 | — | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 12.92 | 0.00 | 2.206 | 12.08 | 0.00 | 5.2 | 94.6 | 0.1 | 0.10 | 16.93 | 0.56 | 0.46 | — | 18944 | 2876 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8SPo | 40680 | 2023-11-20 | 2023-05-03 | 2.98 | 2.34 | 3.17 | 2.1 | 0.004 | 0.60 | 0.0 | 0.26 | 16.49 | 0.00 | 0.334 | 11.05 | 0.00 | 6.0 | 94.0 | 0.0 | -1.15 | 0.46 | 0.30 | 0.19 | 1.6 | 0.004 | 0.73 | 0.0 | 0.04 | 18.26 | 0.00 | 1.816 | 13.01 | 2.09 | 6.6 | 93.4 | 0.0 | -1.23 | 1.36 | 0.57 | 0.49 | 1.10 | 31307 | 3428 | 22 | 154 | 6 | 0 | 0 | logfile |
✔ | 7JGJ | 22328 | 2023-11-15 | 2020-07-19 | 4.8 | 7.06 | — | 6.5 | 0.013 | 2.22 | 17.0 | 0.31 | 17.49 | 0.01 | 1.656 | 7.23 | 12.68 | 7.2 | 91.6 | 1.2 | -2.09 | 0.88 | 0.68 | — | 6.5 | 0.003 | 0.75 | 0.0 | 0.04 | 13.51 | 0.00 | 2.045 | 26.33 | 0.07 | 7.2 | 92.7 | 0.1 | -2.02 | 1.26 | 0.84 | 0.49 | — | 13324 | 1707 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E4C | 27888 | 2023-11-13 | 2022-08-18 | 4.0 | 3.22 | 3.15 | 3.1 | 0.005 | 0.84 | 2.0 | 0.07 | 16.48 | 0.01 | 2.251 | 7.49 | 1.84 | 6.1 | 93.9 | 0.0 | -0.24 | 0.48 | 0.49 | — | 3.1 | 0.004 | 0.80 | 0.0 | 0.05 | 17.38 | 0.01 | 2.102 | 17.02 | 1.27 | 6.6 | 93.4 | 0.0 | -0.69 | 1.33 | 0.48 | 0.49 | — | 6398 | 805 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7K8D | 22728 | 2023-11-15 | 2020-09-26 | 4.33 | 4.48 | — | 4.7 | 0.004 | 1.12 | 0.0 | 0.06 | 12.53 | 0.01 | 2.205 | 23.61 | 1.86 | 4.3 | 95.7 | 0.0 | -2.98 | 0.33 | 0.40 | — | 4.6 | 0.003 | 0.80 | 0.0 | 0.04 | 13.50 | 0.01 | 2.094 | 15.68 | 0.00 | 4.9 | 95.1 | 0.0 | 0.82 | 1.46 | 0.41 | 0.49 | — | 5529 | 725 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NKC | 12437 | 2023-11-20 | 2021-02-17 | 4.46 | 4.76 | — | 4.6 | 0.004 | 0.72 | 0.0 | 0.04 | 13.69 | 0.01 | 1.795 | 9.79 | 0.25 | 4.3 | 95.7 | 0.1 | -0.76 | 0.51 | 0.30 | — | 4.7 | 0.003 | 0.66 | 0.0 | 0.04 | 14.14 | 0.00 | 1.795 | 19.17 | 0.00 | 5.5 | 94.5 | 0.0 | -0.59 | 1.90 | 0.63 | 0.50 | — | 28788 | 1795 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7AST | 11904 | 2023-11-21 | 2020-10-28 | 4.0 | 3.84 | — | 3.6 | 0.016 | 1.10 | 1.0 | 0.06 | 15.36 | 0.01 | 1.913 | 32.62 | 0.00 | 20.8 | 78.6 | 0.6 | -4.78 | 0.61 | 0.46 | — | 3.5 | 0.016 | 0.95 | 0.0 | 0.05 | 17.52 | 0.01 | 2.125 | 25.76 | 0.29 | 16.7 | 83.0 | 0.3 | -3.63 | 1.41 | 0.64 | 0.50 | — | 34518 | 4365 | 17 | 0 | 36 | 0 | 0 | logfile |
✔ | 8G6i | 29770 | 2023-11-15 | 2023-02-15 | 4.23 | 4.53 | 4.35 | 4.2 | 0.003 | 0.68 | 0.0 | 0.05 | 13.10 | 0.01 | 2.143 | 10.55 | 0.00 | 9.3 | 90.4 | 0.3 | -3.49 | 0.69 | 0.42 | — | 4.2 | 0.003 | 0.72 | 0.0 | 0.05 | 13.49 | 0.00 | 2.145 | 16.76 | 0.00 | 11.4 | 88.3 | 0.2 | -3.44 | 2.50 | 0.72 | 0.50 | — | 13287 | 1665 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 6V4J | 21041 | 2023-11-19 | 2019-11-27 | 2.97 | 2.66 | — | 2.6 | 0.010 | 1.79 | 8.0 | 0.09 | 13.20 | 0.01 | 0.244 | 16.47 | 5.36 | 4.0 | 95.7 | 0.3 | -0.54 | 0.47 | 0.48 | 1.90 | 2.6 | 0.003 | 0.81 | 0.0 | 0.04 | 16.33 | 0.00 | 2.100 | 13.99 | 3.48 | 4.6 | 95.4 | 0.0 | -1.07 | 1.53 | 0.48 | 0.50 | 1.34 | 20637 | 2697 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YRG | 10889 | 2023-11-18 | 2020-04-20 | 4.8 | 6.94 | — | 7.9 | 0.009 | 1.41 | 18.0 | 0.08 | 13.69 | 0.01 | 1.270 | 31.61 | 0.48 | 9.4 | 90.3 | 0.3 | -2.26 | 0.66 | 0.32 | — | 7.9 | 0.003 | 0.74 | 0.0 | 0.04 | 13.07 | 0.00 | 2.157 | 15.69 | 0.00 | 9.7 | 90.2 | 0.1 | -1.41 | 3.45 | 0.74 | 0.50 | — | 21992 | 2736 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MDW | 23782 | 2023-11-13 | 2021-04-06 | 3.58 | 2.25 | 3.45 | 1.5 | 0.002 | 0.55 | 0.0 | 0.04 | 12.65 | 0.00 | 2.293 | 8.46 | 0.00 | 6.5 | 93.5 | 0.0 | -1.58 | 0.52 | 0.44 | 1.65 | 1.5 | 0.005 | 0.79 | 0.0 | 0.05 | 15.12 | 0.00 | 2.071 | 19.80 | 0.56 | 13.5 | 86.5 | 0.0 | -3.45 | 1.37 | 0.56 | 0.50 | 1.94 | 3392 | 435 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7oTi | 13060 | 2023-11-14 | 2021-06-10 | 4.2 | 4.80 | — | 7.9 | 0.014 | 1.99 | 12.0 | 0.10 | 16.95 | 0.02 | 2.507 | 0.59 | 4.71 | 10.8 | 87.9 | 1.4 | -3.63 | 0.36 | 0.23 | — | 4.9 | 0.003 | 0.86 | 0.0 | 0.04 | 14.40 | 0.00 | 2.119 | 20.52 | 0.00 | 7.2 | 92.3 | 0.5 | -1.27 | 1.77 | 0.52 | 0.51 | — | 9171 | 1182 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GTD | 34250 | 2023-11-20 | 2022-09-08 | 4.7 | 4.27 | 4.25 | 4.2 | 0.014 | 2.16 | 0.0 | 0.00 | 5.49 | 0.01 | 2.285 | 3.73 | 0.00 | 8.4 | 90.0 | 1.6 | 0.41 | 0.50 | 0.44 | — | 4.2 | 0.004 | 0.93 | 0.0 | 0.00 | 6.20 | 0.00 | 2.228 | 4.76 | 0.00 | 19.1 | 80.2 | 0.7 | -2.63 | 1.26 | 0.52 | 0.51 | — | 29580 | 7392 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DGi | 27423 | 2023-11-15 | 2022-06-23 | 3.94 | 4.27 | 4.04 | 4.1 | 0.005 | 1.16 | 4.0 | 0.06 | 15.93 | 0.01 | 2.263 | 8.89 | 0.67 | 5.9 | 93.8 | 0.3 | -2.32 | 0.67 | 0.52 | 0.27 | 4.1 | 0.003 | 0.75 | 0.0 | 0.04 | 16.38 | 0.00 | 2.110 | 20.11 | 0.53 | 6.1 | 93.8 | 0.1 | -0.44 | 0.60 | 0.66 | 0.51 | 0.27 | 13580 | 1690 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CEo | 16611 | 2023-11-14 | 2023-02-02 | 3.6 | 3.26 | 3.48 | 2.9 | 0.004 | 0.75 | 1.0 | 0.05 | 16.34 | 0.01 | 2.091 | 6.70 | 0.00 | 2.9 | 97.1 | 0.0 | -0.68 | 0.73 | 0.56 | 1.54 | 2.9 | 0.006 | 0.67 | 0.0 | 0.04 | 17.74 | 0.00 | 1.876 | 14.74 | 0.14 | 3.2 | 96.8 | 0.0 | 0.56 | 0.67 | 0.68 | 0.52 | 1.44 | 113584 | 13074 | 66 | 418 | 19 | 0 | 0 | logfile |
✔ | 8GH8 | 40036 | 2023-11-14 | 2023-03-09 | 4.3 | 4.08 | 3.85 | 4.0 | 0.004 | 0.79 | 0.0 | 0.05 | 26.42 | 0.01 | 2.219 | 10.05 | 0.23 | 12.7 | 86.8 | 0.5 | -3.65 | 0.48 | 0.44 | — | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 26.31 | 0.01 | 2.248 | 9.66 | 0.00 | 12.3 | 87.5 | 0.2 | -3.87 | 1.07 | 0.53 | 0.52 | — | 6991 | 559 | 8 | 136 | 0 | 0 | 0 | logfile |
✔ | 3J5R | 5777 | 2023-11-17 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.36 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | 7.3 | 0.003 | 0.88 | 0.0 | 0.04 | 13.21 | 0.00 | 2.219 | 17.86 | 0.00 | 6.4 | 93.2 | 0.4 | 0.16 | 1.78 | 0.67 | 0.52 | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 7XAQ | 33097 | 2023-11-18 | 2022-03-18 | 3.59 | 4.39 | — | 4.3 | 0.007 | 1.02 | 1.0 | 0.05 | 23.28 | 0.01 | 1.800 | 11.83 | 2.87 | 11.8 | 87.9 | 0.3 | -4.12 | 0.78 | 0.53 | 0.56 | 3.4 | 0.004 | 0.84 | 0.0 | 0.04 | 23.95 | 0.01 | 2.103 | 28.43 | 0.59 | 9.3 | 90.5 | 0.3 | -1.55 | 0.93 | 0.77 | 0.52 | 0.46 | 13396 | 1197 | 10 | 172 | 0 | 0 | 0 | logfile |