Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JGF	22325	2023-11-13	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	8F7J	28905	2023-11-13	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile
✔	7LVT	23542	2023-11-17	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.40	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.71	0.0	0.04	12.92	0.00	2.206	12.08	0.00	5.2	94.6	0.1	0.10	16.93	0.56	0.46	—	18944	2876	4	0	0	0	0	logfile
✔	8SPo	40680	2023-11-20	2023-05-03	2.98	2.34	3.17	2.1	0.004	0.60	0.0	0.26	16.49	0.00	0.334	11.05	0.00	6.0	94.0	0.0	-1.15	0.46	0.30	0.19	1.6	0.004	0.73	0.0	0.04	18.26	0.00	1.816	13.01	2.09	6.6	93.4	0.0	-1.23	1.36	0.57	0.49	1.10	31307	3428	22	154	6	0	0	logfile
✔	7JGJ	22328	2023-11-15	2020-07-19	4.8	7.06	—	6.5	0.013	2.22	17.0	0.31	17.49	0.01	1.656	7.23	12.68	7.2	91.6	1.2	-2.09	0.88	0.68	—	6.5	0.003	0.75	0.0	0.04	13.51	0.00	2.045	26.33	0.07	7.2	92.7	0.1	-2.02	1.26	0.84	0.49	—	13324	1707	3	0	0	0	0	logfile
✔	8E4C	27888	2023-11-13	2022-08-18	4.0	3.22	3.15	3.1	0.005	0.84	2.0	0.07	16.48	0.01	2.251	7.49	1.84	6.1	93.9	0.0	-0.24	0.48	0.49	—	3.1	0.004	0.80	0.0	0.05	17.38	0.01	2.102	17.02	1.27	6.6	93.4	0.0	-0.69	1.33	0.48	0.49	—	6398	805	6	0	5	0	0	logfile
✔	7K8D	22728	2023-11-15	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.80	0.0	0.04	13.50	0.01	2.094	15.68	0.00	4.9	95.1	0.0	0.82	1.46	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	7NKC	12437	2023-11-20	2021-02-17	4.46	4.76	—	4.6	0.004	0.72	0.0	0.04	13.69	0.01	1.795	9.79	0.25	4.3	95.7	0.1	-0.76	0.51	0.30	—	4.7	0.003	0.66	0.0	0.04	14.14	0.00	1.795	19.17	0.00	5.5	94.5	0.0	-0.59	1.90	0.63	0.50	—	28788	1795	6	23	0	0	13868	logfile
✔	7AST	11904	2023-11-21	2020-10-28	4.0	3.84	—	3.6	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.62	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.5	0.016	0.95	0.0	0.05	17.52	0.01	2.125	25.76	0.29	16.7	83.0	0.3	-3.63	1.41	0.64	0.50	—	34518	4365	17	0	36	0	0	logfile
✔	8G6i	29770	2023-11-15	2023-02-15	4.23	4.53	4.35	4.2	0.003	0.68	0.0	0.05	13.10	0.01	2.143	10.55	0.00	9.3	90.4	0.3	-3.49	0.69	0.42	—	4.2	0.003	0.72	0.0	0.05	13.49	0.00	2.145	16.76	0.00	11.4	88.3	0.2	-3.44	2.50	0.72	0.50	—	13287	1665	5	0	4	0	0	logfile
✔	6V4J	21041	2023-11-19	2019-11-27	2.97	2.66	—	2.6	0.010	1.79	8.0	0.09	13.20	0.01	0.244	16.47	5.36	4.0	95.7	0.3	-0.54	0.47	0.48	1.90	2.6	0.003	0.81	0.0	0.04	16.33	0.00	2.100	13.99	3.48	4.6	95.4	0.0	-1.07	1.53	0.48	0.50	1.34	20637	2697	8	0	0	0	0	logfile
✔	6YRG	10889	2023-11-18	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.61	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.003	0.74	0.0	0.04	13.07	0.00	2.157	15.69	0.00	9.7	90.2	0.1	-1.41	3.45	0.74	0.50	—	21992	2736	4	0	0	0	0	logfile
✔	7MDW	23782	2023-11-13	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.65	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.005	0.79	0.0	0.05	15.12	0.00	2.071	19.80	0.56	13.5	86.5	0.0	-3.45	1.37	0.56	0.50	1.94	3392	435	4	0	1	0	0	logfile
✔	7oTi	13060	2023-11-14	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.86	0.0	0.04	14.40	0.00	2.119	20.52	0.00	7.2	92.3	0.5	-1.27	1.77	0.52	0.51	—	9171	1182	1	0	0	0	0	logfile
✔	8GTD	34250	2023-11-20	2022-09-08	4.7	4.27	4.25	4.2	0.014	2.16	0.0	0.00	5.49	0.01	2.285	3.73	0.00	8.4	90.0	1.6	0.41	0.50	0.44	—	4.2	0.004	0.93	0.0	0.00	6.20	0.00	2.228	4.76	0.00	19.1	80.2	0.7	-2.63	1.26	0.52	0.51	—	29580	7392	24	0	0	0	0	logfile
✔	8DGi	27423	2023-11-15	2022-06-23	3.94	4.27	4.04	4.1	0.005	1.16	4.0	0.06	15.93	0.01	2.263	8.89	0.67	5.9	93.8	0.3	-2.32	0.67	0.52	0.27	4.1	0.003	0.75	0.0	0.04	16.38	0.00	2.110	20.11	0.53	6.1	93.8	0.1	-0.44	0.60	0.66	0.51	0.27	13580	1690	2	0	0	0	0	logfile
✔	8CEo	16611	2023-11-14	2023-02-02	3.6	3.26	3.48	2.9	0.004	0.75	1.0	0.05	16.34	0.01	2.091	6.70	0.00	2.9	97.1	0.0	-0.68	0.73	0.56	1.54	2.9	0.006	0.67	0.0	0.04	17.74	0.00	1.876	14.74	0.14	3.2	96.8	0.0	0.56	0.67	0.68	0.52	1.44	113584	13074	66	418	19	0	0	logfile
✔	8GH8	40036	2023-11-14	2023-03-09	4.3	4.08	3.85	4.0	0.004	0.79	0.0	0.05	26.42	0.01	2.219	10.05	0.23	12.7	86.8	0.5	-3.65	0.48	0.44	—	4.1	0.003	0.72	0.0	0.04	26.31	0.01	2.248	9.66	0.00	12.3	87.5	0.2	-3.87	1.07	0.53	0.52	—	6991	559	8	136	0	0	0	logfile
✔	3J5R	5777	2023-11-17	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.003	0.88	0.0	0.04	13.21	0.00	2.219	17.86	0.00	6.4	93.2	0.4	0.16	1.78	0.67	0.52	—	17564	2324	4	0	44	0	0	logfile
✔	7XAQ	33097	2023-11-18	2022-03-18	3.59	4.39	—	4.3	0.007	1.02	1.0	0.05	23.28	0.01	1.800	11.83	2.87	11.8	87.9	0.3	-4.12	0.78	0.53	0.56	3.4	0.004	0.84	0.0	0.04	23.95	0.01	2.103	28.43	0.59	9.3	90.5	0.3	-1.55	0.93	0.77	0.52	0.46	13396	1197	10	172	0	0	0	logfile

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