Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WGC	32483	2022-07-03	2021-12-28	3.6	3.85	—	3.8	0.003	0.62	0.0	0.04	14.73	0.00	2.191	10.34	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.015	1.40	0.0	0.04	16.26	0.00	2.160	16.38	0.14	4.8	95.1	0.1	0.06	0.36	0.56	0.55	1.23	6527	795	4	0	5	0	0	logfile
✔	6T59	10380	2022-07-07	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.88	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.006	1.03	4.0	0.05	19.37	0.01	0.984	28.80	0.63	9.2	90.7	0.1	-2.66	1.99	0.57	0.55	0.42	143047	7383	64	3890	225	0	0	logfile
✔	7LF0	23296	2022-07-06	2021-01-15	3.68	2.09	3.76	3.7	0.008	1.10	0.0	0.06	10.18	0.01	2.157	7.70	1.09	11.4	87.8	0.8	-4.41	0.51	0.54	1.30	3.6	0.007	1.00	0.0	0.05	14.82	0.01	2.054	21.55	0.57	13.0	86.8	0.2	-2.82	0.95	0.52	0.55	1.18	34548	4542	18	0	0	0	0	logfile
✔	6B3R	7042	2022-07-07	2017-09-22	3.8	3.79	—	3.8	0.006	1.04	0.0	0.06	10.17	0.01	2.247	4.98	0.25	8.1	91.9	0.0	-4.41	0.35	0.53	1.24	3.8	0.013	1.32	4.0	0.04	15.45	0.01	1.532	15.28	0.14	7.0	92.9	0.0	-0.32	0.97	0.39	0.55	1.23	35718	4506	6	0	48	0	0	logfile
✔	6RAX	4786	2022-07-07	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	24.00	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.006	0.87	0.0	0.04	18.40	0.01	2.102	15.60	0.72	11.8	88.2	0.0	-3.06	1.49	0.57	0.55	0.36	40970	5062	19	29	6	0	0	logfile
✔	6CRZ	7577	2022-07-05	2018-03-19	3.3	3.42	3.35	4.5	0.007	0.96	0.0	0.06	9.21	0.01	2.254	6.85	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.4	0.007	0.94	0.0	0.05	13.56	0.01	2.084	15.47	0.61	7.1	92.9	0.1	-2.19	1.45	0.59	0.55	0.91	25909	3205	6	0	66	0	0	logfile
✔	6HD5	0201	2022-07-03	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.29	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	7EGA	31110	2022-07-05	2021-03-24	4.1	4.55	—	4.1	0.008	1.08	35.0	0.07	16.87	0.01	1.445	18.80	3.89	6.5	93.1	0.4	-3.75	0.60	0.28	—	3.9	0.005	0.77	0.0	0.04	15.63	0.00	1.863	18.42	0.00	6.3	93.6	0.1	-0.76	1.41	0.75	0.56	—	85697	10273	49	170	11	0	0	logfile
✔	5X59	6704	2022-07-05	2017-02-15	3.7	3.77	—	3.7	0.011	1.65	0.0	0.08	14.81	0.01	1.477	23.41	4.97	13.2	85.4	1.3	-3.87	0.48	0.41	0.15	3.7	0.011	1.41	1.0	0.05	15.52	0.01	1.647	29.34	0.27	13.3	86.4	0.3	-2.68	0.93	0.55	0.56	0.87	26838	3423	6	0	30	0	0	logfile
✔	5LKH	4068	2022-07-07	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.004	0.83	0.0	0.04	15.55	0.01	2.085	26.64	0.22	6.6	93.4	0.0	-0.75	2.06	0.50	0.56	0.33	37345	4740	5	0	0	0	0	logfile
✔	6QG2	4545	2022-07-07	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.73	7.64	13.2	83.4	3.4	-1.88	0.58	0.37	—	4.5	0.003	0.75	0.0	0.05	15.45	0.00	2.126	17.40	0.00	10.5	88.9	0.6	-1.87	1.68	0.69	0.56	—	38664	4961	16	0	0	0	0	logfile
✔	7U10	26273	2022-07-03	2022-02-19	3.0	3.45	—	4.3	0.003	0.57	0.0	0.05	15.69	0.00	2.230	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.2	0.004	0.66	0.0	0.07	18.06	0.01	2.203	12.01	3.17	7.3	92.7	0.0	-3.34	2.75	0.21	0.56	3.09	3429	405	6	0	12	0	0	logfile
✔	7R4Q	14314	2022-07-08	2022-02-09	3.6	3.14	—	5.7	0.022	3.25	109.0	0.39	15.94	0.02	1.450	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.004	1.02	5.0	0.17	15.72	0.01	1.727	21.94	0.57	6.4	93.6	0.0	-1.97	1.67	0.62	0.56	0.48	51420	3414	13	0	43	0	24182	logfile
✔	6XoW	22282	2022-07-03	2020-07-07	4.6	8.17	4.40	7.0	0.006	1.00	0.0	0.05	13.43	0.01	1.991	24.59	0.23	4.2	95.8	0.0	-0.98	0.87	0.72	—	7.0	0.003	0.76	0.0	0.04	13.40	0.01	2.106	25.18	0.23	3.7	96.3	0.0	0.29	0.80	0.86	0.56	—	7711	966	1	0	0	0	0	logfile
✔	7NiU	12365	2022-07-04	2021-02-14	4.2	3.68	—	3.5	0.008	1.01	0.0	0.05	15.90	0.01	2.110	34.18	1.67	14.7	85.0	0.2	-5.18	0.57	0.58	—	3.5	0.004	0.72	0.0	0.04	14.80	0.01	2.111	15.87	0.18	6.9	93.1	0.0	-1.82	1.64	0.56	0.57	—	15495	2015	6	0	2	0	0	logfile
✔	6ZD0	11172	2022-07-03	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.3	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	7U12	26275	2022-07-03	2022-02-19	3.5	3.59	—	4.4	0.011	1.02	0.0	0.07	16.79	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.2	0.005	0.86	0.0	0.06	15.96	0.00	2.181	16.28	0.00	10.5	89.5	0.0	-3.98	2.91	0.34	0.57	2.51	3456	405	6	0	12	0	0	logfile
✔	6RAY	4787	2022-07-07	2019-04-08	4.28	4.39	4.31	4.4	0.013	1.77	39.0	0.16	18.46	0.02	1.031	19.83	7.45	17.4	81.8	0.8	-5.68	0.58	0.59	—	4.3	0.005	0.85	0.0	0.04	15.24	0.00	2.082	15.74	0.09	11.4	88.5	0.1	-3.33	1.14	0.60	0.57	—	39071	4887	18	13	6	0	0	logfile
✔	7NCi	12267	2022-07-03	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	4.0	0.003	0.59	2.0	0.05	14.74	0.00	1.986	16.42	0.37	11.1	88.9	0.0	-4.08	1.11	0.64	0.57	-0.11	11292	816	12	0	0	0	5796	logfile
✔	7BZX	30262	2022-07-03	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.004	1.07	0.0	0.05	8.41	0.00	2.068	18.09	0.00	18.4	81.5	0.1	-5.13	3.15	0.75	0.57	—	5652	1154	2	0	0	0	0	logfile

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