Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oFJ	20047	2022-04-05	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.57	0.0	0.04	14.05	0.00	1.989	9.42	0.00	8.0	92.0	0.0	-2.00	1.40	0.55	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	3LoS	5137	2022-04-05	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	88.10	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.007	1.33	0.0	0.05	16.09	0.01	1.037	31.38	0.00	20.2	75.6	4.2	-4.47	1.32	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	6CS1	7579	2022-04-07	2018-03-19	4.6	4.79	4.84	6.8	0.005	0.85	0.0	0.05	8.80	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.5	0.003	0.70	0.0	0.05	11.19	0.00	2.114	17.45	0.00	6.0	94.0	0.0	-2.14	1.73	0.70	0.54	—	25995	3202	6	0	75	0	0	logfile
✔	6XAS	22114	2022-04-09	2020-06-04	3.8	3.01	3.14	2.9	0.002	0.49	0.0	0.04	10.96	0.00	1.961	4.92	1.49	2.2	97.8	0.0	-2.00	0.62	0.55	1.72	3.0	0.004	0.65	0.0	0.04	14.63	0.00	1.805	9.25	0.20	4.4	95.6	0.0	-0.24	0.76	0.61	0.54	1.64	46887	5804	16	73	3	0	0	logfile
✔	7K8A	22724	2022-04-05	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.00	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.004	0.85	0.0	0.04	15.78	0.01	2.217	13.68	0.51	4.3	95.7	0.0	-0.51	0.48	0.41	0.54	0.25	5513	723	1	0	0	0	0	logfile
✔	6RAX	4786	2022-04-09	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	23.90	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.006	0.87	0.0	0.04	18.40	0.01	2.102	15.47	0.72	11.8	88.2	0.0	-3.06	1.49	0.57	0.55	0.36	40970	5062	19	29	6	0	0	logfile
✔	6CRZ	7577	2022-04-07	2018-03-19	3.3	3.42	3.35	4.5	0.007	0.96	0.0	0.06	9.21	0.01	2.254	6.75	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.4	0.007	0.94	0.0	0.05	13.56	0.01	2.084	15.45	0.61	7.1	92.9	0.1	-2.19	1.45	0.59	0.55	0.91	25909	3205	6	0	66	0	0	logfile
✔	6G90	4364	2022-04-05	2018-04-10	4.0	4.12	—	3.9	0.009	1.30	2.0	0.07	12.62	0.03	1.687	18.96	0.57	7.8	91.4	0.8	-3.55	0.51	0.41	—	3.9	0.007	0.99	1.0	0.04	14.90	0.01	1.984	18.95	0.09	6.4	93.2	0.3	-0.64	3.66	0.57	0.55	—	65050	6796	43	474	223	0	0	logfile
✔	6HD5	0201	2022-04-04	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.18	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	7LF0	23296	2022-04-08	2021-01-15	3.68	2.09	3.76	3.7	0.008	1.10	0.0	0.06	10.18	0.01	2.157	7.30	1.09	11.4	87.8	0.8	-4.41	0.51	0.54	1.30	3.6	0.007	1.00	0.0	0.05	14.82	0.01	2.054	21.09	0.57	13.0	86.8	0.2	-2.82	0.95	0.52	0.55	1.18	34548	4542	18	0	0	0	0	logfile
✔	6B3R	7042	2022-04-08	2017-09-22	3.8	3.79	—	3.8	0.006	1.04	0.0	0.06	10.17	0.01	2.247	4.81	0.25	8.1	91.9	0.0	-4.41	0.35	0.53	1.24	3.8	0.013	1.32	4.0	0.04	15.45	0.01	1.532	15.11	0.14	7.0	92.9	0.0	-0.32	0.97	0.39	0.55	1.23	35718	4506	6	0	48	0	0	logfile
✔	5LKH	4068	2022-04-08	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.10	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.004	0.83	0.0	0.04	15.55	0.01	2.085	26.43	0.22	6.6	93.4	0.0	-0.75	2.06	0.50	0.56	0.33	37345	4740	5	0	0	0	0	logfile
✔	6QG2	4545	2022-04-08	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.68	7.64	13.2	83.4	3.4	-1.88	0.58	0.37	—	4.5	0.003	0.75	0.0	0.05	15.45	0.00	2.126	17.21	0.00	10.5	88.9	0.6	-1.87	1.68	0.69	0.56	—	38664	4961	16	0	0	0	0	logfile
✔	5X59	6704	2022-04-07	2017-02-15	3.7	3.77	—	3.7	0.011	1.65	0.0	0.08	14.81	0.01	1.477	23.24	4.97	13.2	85.4	1.3	-3.87	0.48	0.41	0.15	3.7	0.011	1.41	1.0	0.05	15.52	0.01	1.647	29.17	0.27	13.3	86.4	0.3	-2.68	0.93	0.55	0.56	0.87	26838	3423	6	0	30	0	0	logfile
✔	7EGA	31110	2022-04-08	2021-03-24	4.1	4.55	—	4.1	0.008	1.08	35.0	0.07	16.87	0.01	1.445	18.65	3.89	6.5	93.1	0.4	-3.75	0.60	0.28	—	3.9	0.005	0.77	0.0	0.04	15.63	0.00	1.863	18.18	0.00	6.3	93.6	0.1	-0.76	1.41	0.75	0.56	—	85697	10273	49	170	11	0	0	logfile
✔	6XoW	22282	2022-04-04	2020-07-07	4.6	8.17	4.40	7.0	0.006	1.00	0.0	0.05	13.43	0.01	1.991	24.14	0.23	4.2	95.8	0.0	-0.98	0.87	0.72	—	7.0	0.003	0.76	0.0	0.04	13.40	0.01	2.106	24.59	0.23	3.7	96.3	0.0	0.29	0.80	0.86	0.56	—	7711	966	1	0	0	0	0	logfile
✔	7U10	26273	2022-04-04	2022-02-19	3.0	3.45	—	4.3	0.003	0.57	0.0	0.05	15.69	0.00	2.230	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.2	0.004	0.66	0.0	0.07	18.06	0.01	2.203	12.01	3.17	7.3	92.7	0.0	-3.34	2.75	0.21	0.56	3.09	3429	405	6	0	12	0	0	logfile
✔	5Li4	4052	2022-04-06	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.15	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	13.71	0.01	2.118	26.65	0.00	14.0	85.0	1.0	-3.83	4.19	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✔	7NCi	12267	2022-04-05	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	4.0	0.003	0.59	2.0	0.05	14.74	0.00	1.986	16.42	0.37	11.1	88.9	0.0	-4.08	1.11	0.64	0.57	-0.11	11292	816	12	0	0	0	5796	logfile
✔	6RAY	4787	2022-04-09	2019-04-08	4.28	4.39	4.31	4.4	0.013	1.77	39.0	0.16	18.46	0.02	1.031	19.77	7.45	17.4	81.8	0.8	-5.68	0.58	0.59	—	4.3	0.005	0.85	0.0	0.04	15.24	0.00	2.082	15.65	0.09	11.4	88.5	0.1	-3.33	1.14	0.60	0.57	—	39071	4887	18	13	6	0	0	logfile

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