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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7URM | 26714 | 2022-12-11 | 2022-04-22 | 3.0 | 3.11 | 3.56 | 2.9 | 0.009 | 1.41 | 0.0 | 0.11 | 23.67 | 0.01 | 2.440 | 0.70 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.14 | 0.53 | — | 3.0 | 0.007 | 1.17 | 0.0 | 0.05 | 22.99 | 0.01 | 1.988 | 30.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.15 | 0.55 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 7YEG | 33772 | 2022-12-11 | 2022-07-05 | 3.73 | 3.29 | 3.71 | 3.5 | 0.002 | 0.46 | 0.0 | 0.04 | 13.10 | 0.00 | 2.191 | 5.24 | 0.37 | 3.1 | 96.8 | 0.0 | -4.62 | 0.61 | 0.57 | 0.60 | 3.5 | 0.004 | 0.70 | 0.0 | 0.05 | 15.66 | 0.00 | 1.799 | 12.14 | 0.22 | 5.7 | 94.3 | 0.0 | -1.49 | 3.06 | 0.59 | 0.55 | 1.16 | 49974 | 6306 | 24 | 0 | 51 | 0 | 0 | logfile |
✔ | 7EGA | 31110 | 2022-12-16 | 2021-03-24 | 4.1 | 4.55 | — | 4.1 | 0.008 | 1.08 | 35.0 | 0.07 | 16.87 | 0.01 | 1.445 | 18.80 | 3.89 | 6.5 | 93.1 | 0.4 | -3.75 | 0.60 | 0.28 | — | 3.9 | 0.004 | 0.71 | 0.0 | 0.04 | 15.57 | 0.00 | 1.930 | 15.63 | 0.00 | 5.4 | 94.5 | 0.1 | -0.50 | 1.39 | 0.75 | 0.55 | — | 85697 | 10273 | 49 | 170 | 11 | 0 | 0 | logfile |
✔ | 7LF0 | 23296 | 2022-12-19 | 2021-01-15 | 3.68 | 2.09 | 3.76 | 3.7 | 0.008 | 1.10 | 0.0 | 0.06 | 10.18 | 0.01 | 2.157 | 7.70 | 1.09 | 11.4 | 87.8 | 0.8 | -4.41 | 0.51 | 0.54 | 1.30 | 3.6 | 0.004 | 0.89 | 0.0 | 0.05 | 14.96 | 0.01 | 2.026 | 21.18 | 0.65 | 11.6 | 88.2 | 0.2 | -2.92 | 0.99 | 0.52 | 0.55 | 1.05 | 34548 | 4542 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FiJ | 31599 | 2022-12-11 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.3 | 0.007 | 0.96 | 0.0 | 0.05 | 12.41 | 0.00 | 2.193 | 14.37 | 2.50 | 18.3 | 81.7 | 0.0 | -2.16 | 0.76 | 0.61 | 0.55 | 2.86 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WGC | 32483 | 2022-12-11 | 2021-12-28 | 3.6 | 3.85 | — | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 14.73 | 0.00 | 2.191 | 10.34 | 0.00 | 3.8 | 96.2 | 0.0 | -0.11 | 0.56 | 0.55 | 1.21 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 16.23 | 0.00 | 2.191 | 12.22 | 0.00 | 4.6 | 95.4 | 0.0 | 0.04 | 0.36 | 0.56 | 0.55 | 0.89 | 6527 | 795 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 5ZWo | 6974 | 2022-12-16 | 2018-05-16 | 3.9 | 4.04 | — | 3.8 | 0.014 | 1.42 | 19.0 | 0.08 | 14.28 | 0.01 | 1.462 | 25.51 | 0.63 | 9.1 | 90.0 | 0.9 | -4.00 | 0.65 | 0.62 | 1.56 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 14.39 | 0.00 | 1.847 | 12.26 | 0.27 | 5.9 | 93.7 | 0.4 | -0.54 | 0.82 | 0.60 | 0.55 | 1.03 | 91261 | 13180 | 61 | 594 | 2 | 0 | 0 | logfile |
✔ | 7K8A | 22724 | 2022-12-12 | 2020-09-26 | 3.65 | 3.57 | — | 3.7 | 0.004 | 0.92 | 1.0 | 0.05 | 13.38 | 0.01 | 2.226 | 16.09 | 0.17 | 6.4 | 93.6 | 0.0 | -1.30 | 0.40 | 0.55 | 0.67 | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 15.86 | 0.01 | 2.217 | 15.91 | 0.68 | 4.7 | 95.3 | 0.0 | -0.59 | 0.47 | 0.42 | 0.55 | 0.61 | 5513 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZQE | 14872 | 2022-12-11 | 2022-04-29 | 2.55 | 3.20 | — | 2.5 | 0.002 | 0.42 | 0.0 | 0.05 | 7.04 | 0.01 | 2.076 | 4.21 | 0.00 | 1.0 | 99.0 | 0.0 | -0.73 | 0.36 | 0.50 | 3.22 | 2.9 | 0.002 | 0.52 | 0.0 | 0.04 | 10.05 | 0.00 | 2.097 | 7.02 | 0.00 | 3.1 | 96.9 | 0.0 | 0.37 | 0.86 | 0.37 | 0.55 | -0.06 | 1423 | 98 | 1 | 0 | 1 | 0 | 694 | logfile |
✔ | 6HD5 | 0201 | 2022-12-12 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.52 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.003 | 0.76 | 0.0 | 0.04 | 11.92 | 0.00 | 2.175 | 17.10 | 0.00 | 5.1 | 94.8 | 0.1 | -0.25 | 2.04 | 0.45 | 0.55 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZFo | 11184 | 2022-12-14 | 2020-06-17 | 4.4 | 4.43 | — | 4.4 | 0.003 | 0.55 | 0.0 | 0.04 | 10.40 | 0.00 | 2.157 | 3.68 | 1.30 | 4.5 | 95.5 | 0.0 | -0.66 | 0.49 | 0.51 | — | 4.4 | 0.004 | 0.63 | 0.0 | 0.04 | 11.47 | 0.00 | 1.895 | 13.46 | 0.00 | 6.0 | 94.0 | 0.0 | -1.01 | 1.57 | 0.52 | 0.56 | — | 18988 | 1252 | 8 | 0 | 2 | 0 | 9310 | logfile |
✔ | 7U13 | 26276 | 2022-12-11 | 2022-02-19 | 2.9 | 3.67 | — | 4.2 | 0.017 | 2.41 | 0.0 | 0.07 | 17.78 | 0.01 | 2.120 | 29.95 | 6.30 | 11.3 | 88.0 | 0.8 | -3.06 | 0.30 | 0.47 | 1.37 | 4.2 | 0.004 | 0.95 | 0.0 | 0.06 | 18.61 | 0.00 | 2.175 | 14.76 | 3.41 | 10.3 | 89.7 | 0.0 | -4.10 | 6.72 | 0.33 | 0.56 | 1.24 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2022-12-19 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.25 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.003 | 0.81 | 0.0 | 0.04 | 15.64 | 0.00 | 2.120 | 25.20 | 0.34 | 6.3 | 93.7 | 0.0 | -0.80 | 2.12 | 0.50 | 0.56 | 0.41 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NiU | 12365 | 2022-12-13 | 2021-02-14 | 4.2 | 3.68 | — | 3.5 | 0.008 | 1.01 | 0.0 | 0.05 | 15.90 | 0.01 | 2.110 | 34.18 | 1.67 | 14.7 | 85.0 | 0.2 | -5.18 | 0.57 | 0.58 | — | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 14.67 | 0.00 | 2.102 | 12.98 | 0.24 | 5.6 | 94.4 | 0.0 | -1.29 | 1.65 | 0.56 | 0.56 | — | 15495 | 2015 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6B3R | 7042 | 2022-12-19 | 2017-09-22 | 3.8 | 3.79 | — | 3.8 | 0.006 | 1.04 | 0.0 | 0.06 | 10.17 | 0.01 | 2.247 | 4.98 | 0.25 | 8.1 | 91.9 | 0.0 | -4.41 | 0.35 | 0.53 | 1.24 | 3.8 | 0.003 | 0.76 | 0.0 | 0.04 | 15.64 | 0.00 | 2.114 | 12.74 | 0.25 | 6.8 | 93.2 | 0.0 | -0.28 | 1.06 | 0.40 | 0.56 | 1.22 | 35718 | 4506 | 6 | 0 | 48 | 0 | 0 | logfile |
✔ | 7U12 | 26275 | 2022-12-11 | 2022-02-19 | 3.5 | 3.59 | — | 4.4 | 0.011 | 1.02 | 0.0 | 0.07 | 16.79 | 0.01 | 2.160 | 20.06 | 5.51 | 8.0 | 92.0 | 0.0 | -3.00 | 0.29 | 0.45 | 2.77 | 4.3 | 0.004 | 0.82 | 0.0 | 0.06 | 15.76 | 0.00 | 2.102 | 13.33 | 0.79 | 9.3 | 90.7 | 0.0 | -3.91 | 2.90 | 0.33 | 0.57 | 2.24 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6G90 | 4364 | 2022-12-13 | 2018-04-10 | 4.0 | 4.12 | — | 3.9 | 0.009 | 1.30 | 2.0 | 0.07 | 12.62 | 0.03 | 1.687 | 19.08 | 0.57 | 7.8 | 91.4 | 0.8 | -3.55 | 0.51 | 0.41 | — | 3.9 | 0.004 | 0.90 | 0.0 | 0.04 | 15.17 | 0.01 | 2.031 | 18.36 | 0.29 | 7.4 | 92.3 | 0.3 | -0.88 | 3.85 | 0.57 | 0.57 | — | 65050 | 6796 | 43 | 474 | 223 | 0 | 0 | logfile |
✔ | 7NCi | 12267 | 2022-12-12 | 2021-01-28 | 3.55 | 3.67 | 3.44 | 4.0 | 0.012 | 1.57 | 2.0 | 0.10 | 15.57 | 0.01 | 2.481 | 0.35 | 0.00 | 8.9 | 91.1 | 0.0 | -3.74 | 0.68 | 0.59 | 1.81 | 4.0 | 0.003 | 0.59 | 2.0 | 0.05 | 14.74 | 0.00 | 1.986 | 16.42 | 0.37 | 11.1 | 88.9 | 0.0 | -4.08 | 1.11 | 0.64 | 0.57 | -0.11 | 11292 | 816 | 12 | 0 | 0 | 0 | 5796 | logfile |
✔ | 5Li4 | 4052 | 2022-12-14 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.06 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.0 | 0.004 | 1.00 | 0.0 | 0.05 | 13.63 | 0.01 | 2.096 | 28.96 | 0.00 | 14.1 | 84.7 | 1.2 | -3.67 | 4.17 | 0.34 | 0.57 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GUD | 34273 | 2022-12-11 | 2022-09-11 | 2.62 | 2.98 | 2.83 | 3.1 | 0.008 | 0.79 | 0.0 | 0.05 | 14.80 | 0.01 | 2.116 | 20.53 | 0.00 | 6.0 | 94.0 | 0.0 | -2.12 | 0.52 | 0.56 | 1.45 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 17.30 | 0.00 | 2.157 | 17.22 | 2.51 | 4.9 | 95.1 | 0.0 | -1.29 | 1.14 | 0.49 | 0.57 | 1.10 | 6814 | 835 | 1 | 0 | 1 | 0 | 0 | logfile |