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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3iZK | 5247 | 2023-04-21 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.38 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.9 | 0.003 | 0.75 | 0.0 | 0.04 | 13.81 | 0.00 | 2.233 | 21.48 | 0.00 | 2.7 | 97.3 | 0.0 | -0.42 | 1.96 | 0.75 | 0.55 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoG | 32651 | 2023-04-20 | 2022-01-21 | 4.06 | 2.95 | — | 2.0 | 0.001 | 0.41 | 0.0 | 0.04 | 8.09 | 0.00 | 2.293 | 10.22 | 3.78 | 8.0 | 92.0 | 0.0 | -3.98 | 0.51 | 0.51 | — | 2.2 | 0.003 | 0.71 | 0.0 | 0.04 | 10.94 | 0.00 | 2.020 | 21.35 | 0.00 | 13.1 | 86.9 | 0.0 | -2.59 | 1.02 | 0.54 | 0.55 | — | 3362 | 433 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K8A | 22724 | 2023-04-21 | 2020-09-26 | 3.65 | 3.57 | — | 3.7 | 0.004 | 0.92 | 1.0 | 0.05 | 13.38 | 0.01 | 2.226 | 16.09 | 0.17 | 6.4 | 93.6 | 0.0 | -1.30 | 0.40 | 0.55 | 0.67 | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 15.86 | 0.01 | 2.225 | 15.74 | 0.34 | 4.6 | 95.3 | 0.1 | -0.56 | 0.46 | 0.42 | 0.55 | 0.22 | 5513 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2023-04-21 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 11.92 | 0.01 | 2.072 | 21.86 | 0.00 | 6.4 | 93.5 | 0.1 | -0.40 | 2.04 | 0.46 | 0.56 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GUD | 34273 | 2023-04-20 | 2022-09-11 | 2.62 | 2.98 | 2.83 | 3.1 | 0.008 | 0.79 | 0.0 | 0.05 | 14.80 | 0.01 | 2.116 | 20.31 | 0.00 | 6.0 | 94.0 | 0.0 | -2.12 | 0.52 | 0.56 | 1.45 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 17.32 | 0.00 | 2.168 | 17.15 | 1.85 | 4.4 | 95.6 | 0.0 | -1.16 | 1.14 | 0.49 | 0.56 | 1.07 | 6814 | 835 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8DRQ | 27681 | 2023-04-20 | 2022-07-21 | 4.16 | 4.28 | 4.60 | 4.1 | 0.004 | 0.89 | 0.0 | 0.05 | 15.60 | 0.01 | 2.283 | 15.85 | 0.00 | 5.9 | 94.1 | 0.0 | -3.30 | 0.39 | 0.56 | — | 4.1 | 0.003 | 0.81 | 0.0 | 0.05 | 13.41 | 0.00 | 2.156 | 19.67 | 0.00 | 8.1 | 91.9 | 0.0 | -3.21 | 1.78 | 0.41 | 0.56 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JMF | 22392 | 2023-04-24 | 2020-07-31 | 4.5 | 5.06 | — | 4.7 | 0.005 | 0.98 | 0.0 | 0.05 | 10.23 | 0.01 | 1.373 | 8.08 | 0.36 | 11.2 | 88.6 | 0.2 | -4.91 | 0.54 | 0.27 | — | 7.7 | 0.004 | 0.94 | 0.0 | 0.05 | 11.59 | 0.01 | 1.145 | 21.14 | 0.00 | 11.3 | 88.5 | 0.2 | -3.66 | 1.53 | 0.76 | 0.56 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7V4J | 31713 | 2023-04-21 | 2021-08-13 | 3.5 | 3.64 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.05 | 13.95 | 0.01 | 2.092 | 19.96 | 0.00 | 8.2 | 91.8 | 0.0 | -1.60 | 0.61 | 0.52 | 1.21 | 3.8 | 0.003 | 0.73 | 0.0 | 0.05 | 16.29 | 0.01 | 2.111 | 19.55 | 0.28 | 6.6 | 93.4 | 0.0 | -1.29 | 0.74 | 0.62 | 0.57 | 1.18 | 9850 | 1275 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JAU | 6366 | 2023-04-22 | 2015-06-24 | 4.8 | 4.76 | — | 6.0 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 10.72 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.003 | 0.70 | 0.0 | 0.04 | 13.62 | 0.00 | 2.034 | 12.63 | 0.00 | 4.6 | 95.0 | 0.4 | -1.07 | 1.45 | 0.24 | 0.57 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZPJ | 14855 | 2023-04-26 | 2022-04-27 | 3.81 | 3.24 | 3.86 | 6.5 | 0.004 | 0.86 | 0.0 | 0.05 | 13.19 | 0.01 | 2.159 | 2.94 | 0.67 | 3.3 | 96.7 | 0.0 | 0.22 | 0.54 | 0.33 | 0.15 | 2.1 | 0.004 | 0.69 | 0.0 | 0.04 | 15.40 | 0.01 | 1.881 | 14.65 | 0.75 | 4.9 | 95.1 | 0.0 | -0.12 | 1.51 | 0.64 | 0.57 | 0.39 | 23479 | 1355 | 3 | 55 | 0 | 0 | 11508 | logfile |
✔ | 6G90 | 4364 | 2023-04-23 | 2018-04-10 | 4.0 | 4.12 | — | 3.9 | 0.009 | 1.30 | 2.0 | 0.07 | 12.73 | 0.03 | 1.687 | 19.01 | 0.57 | 7.8 | 91.4 | 0.8 | -3.55 | 0.51 | 0.41 | — | 3.9 | 0.003 | 0.90 | 0.0 | 0.04 | 15.20 | 0.01 | 2.102 | 17.69 | 0.21 | 7.5 | 92.2 | 0.3 | -0.80 | 3.85 | 0.58 | 0.57 | — | 65050 | 6796 | 43 | 474 | 223 | 0 | 0 | logfile |
✔ | 6i52 | 4410 | 2023-04-20 | 2018-11-12 | 4.7 | 4.78 | — | 8.9 | 0.002 | 0.57 | 0.0 | 0.04 | 16.56 | 0.00 | 2.303 | 10.11 | 5.70 | 11.6 | 87.5 | 0.9 | -4.07 | 0.73 | 0.54 | — | 8.7 | 0.003 | 0.80 | 0.0 | 0.04 | 17.74 | 0.00 | 2.238 | 19.96 | 0.00 | 10.4 | 88.9 | 0.7 | -2.46 | 3.53 | 0.75 | 0.57 | — | 3856 | 432 | 4 | 20 | 0 | 0 | 0 | logfile |
✔ | 7NiU | 12365 | 2023-04-23 | 2021-02-14 | 4.2 | 3.68 | — | 3.5 | 0.008 | 1.01 | 0.0 | 0.05 | 15.90 | 0.01 | 2.110 | 34.12 | 1.67 | 14.7 | 85.0 | 0.2 | -5.18 | 0.57 | 0.58 | — | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 14.73 | 0.00 | 2.133 | 14.43 | 0.18 | 5.9 | 94.1 | 0.0 | -1.65 | 1.64 | 0.57 | 0.57 | — | 15495 | 2015 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7UWK | 26834 | 2023-04-23 | 2022-05-03 | 4.4 | 3.30 | 4.35 | 2.2 | 0.004 | 0.80 | 0.0 | 0.05 | 12.35 | 0.01 | 2.131 | 18.13 | 0.11 | 5.0 | 95.0 | 0.0 | -1.76 | 0.66 | 0.54 | — | 2.3 | 0.005 | 0.80 | 0.0 | 0.05 | 12.71 | 0.01 | 2.083 | 22.39 | 0.11 | 7.5 | 92.5 | 0.0 | -2.04 | 1.87 | 0.66 | 0.57 | — | 16064 | 2059 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D7R | 30610 | 2023-04-20 | 2020-10-05 | 4.0 | 4.04 | — | 4.0 | 0.004 | 0.96 | 0.0 | 0.05 | 14.87 | 0.01 | 2.270 | 5.25 | 0.36 | 3.6 | 96.2 | 0.2 | -3.66 | 0.51 | 0.58 | — | 3.9 | 0.003 | 0.85 | 0.0 | 0.04 | 15.86 | 0.00 | 2.198 | 16.53 | 0.91 | 3.4 | 96.6 | 0.0 | 0.50 | 1.32 | 0.50 | 0.58 | — | 7680 | 1160 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BC5 | 12139 | 2023-04-19 | 2020-12-18 | 3.1 | 3.06 | 3.11 | 3.1 | 0.005 | 1.05 | 0.0 | 0.05 | 15.92 | 0.01 | 2.314 | 7.83 | 0.76 | 8.2 | 91.8 | 0.0 | -5.64 | 0.23 | 0.62 | 0.92 | 3.0 | 0.003 | 0.72 | 0.0 | 0.04 | 17.04 | 0.00 | 2.243 | 14.42 | 0.76 | 7.5 | 92.5 | 0.0 | -2.75 | 1.30 | 0.23 | 0.58 | 0.92 | 1200 | 161 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JQQ | 22441 | 2023-04-28 | 2020-08-11 | 4.1 | 4.43 | — | 4.3 | 0.004 | 0.88 | 0.0 | 0.04 | 23.12 | 0.01 | 1.379 | 26.31 | 0.00 | 9.7 | 90.3 | 0.0 | -2.31 | 0.35 | 0.57 | — | 4.3 | 0.003 | 0.78 | 0.0 | 0.04 | 22.83 | 0.00 | 1.952 | 22.64 | 0.00 | 9.6 | 90.4 | 0.0 | -2.18 | 0.49 | 0.35 | 0.58 | — | 28416 | 1635 | 15 | 705 | 6 | 0 | 0 | logfile |
✔ | 6CS1 | 7579 | 2023-04-27 | 2018-03-19 | 4.6 | 4.79 | 4.84 | 6.8 | 0.006 | 0.92 | 0.0 | 0.06 | 8.77 | 0.01 | 2.229 | 7.26 | 0.00 | 7.2 | 92.8 | 0.0 | -4.20 | 0.61 | 0.31 | — | 4.6 | 0.007 | 1.10 | 1.0 | 0.06 | 11.78 | 0.01 | 1.900 | 35.89 | 0.00 | 11.7 | 88.3 | 0.0 | -3.21 | 1.93 | 0.71 | 0.58 | — | 25995 | 3202 | 27 | 0 | 75 | 0 | 0 | logfile |
✔ | 7NiV | 12366 | 2023-04-23 | 2021-02-14 | 3.6 | 3.27 | — | 3.4 | 0.008 | 1.04 | 0.0 | 0.06 | 15.42 | 0.01 | 2.197 | 22.51 | 0.89 | 9.6 | 90.3 | 0.0 | -5.19 | 0.53 | 0.62 | 1.53 | 3.4 | 0.004 | 0.70 | 0.0 | 0.04 | 16.43 | 0.00 | 2.070 | 13.57 | 0.59 | 6.2 | 93.8 | 0.0 | -1.30 | 1.09 | 0.51 | 0.58 | 0.89 | 15724 | 2020 | 6 | 0 | 8 | 0 | 0 | logfile |
✔ | 6ZD0 | 11172 | 2023-04-20 | 2020-06-13 | 4.6 | 4.62 | 2.80 | 3.7 | 0.004 | 0.91 | 0.0 | 0.05 | 7.55 | 0.00 | 2.207 | 10.05 | 0.00 | 10.1 | 89.8 | 0.1 | -4.73 | 0.59 | 0.58 | — | 4.5 | 0.003 | 0.78 | 0.0 | 0.04 | 5.38 | 0.00 | 2.341 | 5.89 | 0.00 | 15.0 | 84.6 | 0.4 | -4.68 | 2.32 | 0.61 | 0.58 | — | 7962 | 1611 | 6 | 0 | 0 | 0 | 0 | logfile |