Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7URM	26714	2022-12-11	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.17	0.0	0.05	22.99	0.01	1.988	30.29	0.00	0.0	0.0	0.0	—	1.70	0.15	0.55	—	1905	0	1	90	0	0	0	logfile
✔	7YEG	33772	2022-12-11	2022-07-05	3.73	3.29	3.71	3.5	0.002	0.46	0.0	0.04	13.10	0.00	2.191	5.24	0.37	3.1	96.8	0.0	-4.62	0.61	0.57	0.60	3.5	0.004	0.70	0.0	0.05	15.66	0.00	1.799	12.14	0.22	5.7	94.3	0.0	-1.49	3.06	0.59	0.55	1.16	49974	6306	24	0	51	0	0	logfile
✔	7EGA	31110	2022-12-16	2021-03-24	4.1	4.55	—	4.1	0.008	1.08	35.0	0.07	16.87	0.01	1.445	18.80	3.89	6.5	93.1	0.4	-3.75	0.60	0.28	—	3.9	0.004	0.71	0.0	0.04	15.57	0.00	1.930	15.63	0.00	5.4	94.5	0.1	-0.50	1.39	0.75	0.55	—	85697	10273	49	170	11	0	0	logfile
✔	7LF0	23296	2022-12-19	2021-01-15	3.68	2.09	3.76	3.7	0.008	1.10	0.0	0.06	10.18	0.01	2.157	7.70	1.09	11.4	87.8	0.8	-4.41	0.51	0.54	1.30	3.6	0.004	0.89	0.0	0.05	14.96	0.01	2.026	21.18	0.65	11.6	88.2	0.2	-2.92	0.99	0.52	0.55	1.05	34548	4542	18	0	0	0	0	logfile
✔	7FiJ	31599	2022-12-11	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.007	0.96	0.0	0.05	12.41	0.00	2.193	14.37	2.50	18.3	81.7	0.0	-2.16	0.76	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	7WGC	32483	2022-12-11	2021-12-28	3.6	3.85	—	3.8	0.003	0.62	0.0	0.04	14.73	0.00	2.191	10.34	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.003	0.64	0.0	0.04	16.23	0.00	2.191	12.22	0.00	4.6	95.4	0.0	0.04	0.36	0.56	0.55	0.89	6527	795	4	0	5	0	0	logfile
✔	5ZWo	6974	2022-12-16	2018-05-16	3.9	4.04	—	3.8	0.014	1.42	19.0	0.08	14.28	0.01	1.462	25.51	0.63	9.1	90.0	0.9	-4.00	0.65	0.62	1.56	3.8	0.003	0.72	0.0	0.04	14.39	0.00	1.847	12.26	0.27	5.9	93.7	0.4	-0.54	0.82	0.60	0.55	1.03	91261	13180	61	594	2	0	0	logfile
✔	7K8A	22724	2022-12-12	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.003	0.78	0.0	0.04	15.86	0.01	2.217	15.91	0.68	4.7	95.3	0.0	-0.59	0.47	0.42	0.55	0.61	5513	723	1	0	0	0	0	logfile
✔	7ZQE	14872	2022-12-11	2022-04-29	2.55	3.20	—	2.5	0.002	0.42	0.0	0.05	7.04	0.01	2.076	4.21	0.00	1.0	99.0	0.0	-0.73	0.36	0.50	3.22	2.9	0.002	0.52	0.0	0.04	10.05	0.00	2.097	7.02	0.00	3.1	96.9	0.0	0.37	0.86	0.37	0.55	-0.06	1423	98	1	0	1	0	694	logfile
✔	6HD5	0201	2022-12-12	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.76	0.0	0.04	11.92	0.00	2.175	17.10	0.00	5.1	94.8	0.1	-0.25	2.04	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	6ZFo	11184	2022-12-14	2020-06-17	4.4	4.43	—	4.4	0.003	0.55	0.0	0.04	10.40	0.00	2.157	3.68	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	4.4	0.004	0.63	0.0	0.04	11.47	0.00	1.895	13.46	0.00	6.0	94.0	0.0	-1.01	1.57	0.52	0.56	—	18988	1252	8	0	2	0	9310	logfile
✔	7U13	26276	2022-12-11	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.004	0.95	0.0	0.06	18.61	0.00	2.175	14.76	3.41	10.3	89.7	0.0	-4.10	6.72	0.33	0.56	1.24	3456	405	6	0	12	0	0	logfile
✔	5LKH	4068	2022-12-19	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.003	0.81	0.0	0.04	15.64	0.00	2.120	25.20	0.34	6.3	93.7	0.0	-0.80	2.12	0.50	0.56	0.41	37345	4740	5	0	0	0	0	logfile
✔	7NiU	12365	2022-12-13	2021-02-14	4.2	3.68	—	3.5	0.008	1.01	0.0	0.05	15.90	0.01	2.110	34.18	1.67	14.7	85.0	0.2	-5.18	0.57	0.58	—	3.5	0.003	0.68	0.0	0.04	14.67	0.00	2.102	12.98	0.24	5.6	94.4	0.0	-1.29	1.65	0.56	0.56	—	15495	2015	6	0	2	0	0	logfile
✔	6B3R	7042	2022-12-19	2017-09-22	3.8	3.79	—	3.8	0.006	1.04	0.0	0.06	10.17	0.01	2.247	4.98	0.25	8.1	91.9	0.0	-4.41	0.35	0.53	1.24	3.8	0.003	0.76	0.0	0.04	15.64	0.00	2.114	12.74	0.25	6.8	93.2	0.0	-0.28	1.06	0.40	0.56	1.22	35718	4506	6	0	48	0	0	logfile
✔	7U12	26275	2022-12-11	2022-02-19	3.5	3.59	—	4.4	0.011	1.02	0.0	0.07	16.79	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.3	0.004	0.82	0.0	0.06	15.76	0.00	2.102	13.33	0.79	9.3	90.7	0.0	-3.91	2.90	0.33	0.57	2.24	3456	405	6	0	12	0	0	logfile
✔	6G90	4364	2022-12-13	2018-04-10	4.0	4.12	—	3.9	0.009	1.30	2.0	0.07	12.62	0.03	1.687	19.08	0.57	7.8	91.4	0.8	-3.55	0.51	0.41	—	3.9	0.004	0.90	0.0	0.04	15.17	0.01	2.031	18.36	0.29	7.4	92.3	0.3	-0.88	3.85	0.57	0.57	—	65050	6796	43	474	223	0	0	logfile
✔	7NCi	12267	2022-12-12	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	4.0	0.003	0.59	2.0	0.05	14.74	0.00	1.986	16.42	0.37	11.1	88.9	0.0	-4.08	1.11	0.64	0.57	-0.11	11292	816	12	0	0	0	5796	logfile
✔	5Li4	4052	2022-12-14	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.0	0.004	1.00	0.0	0.05	13.63	0.01	2.096	28.96	0.00	14.1	84.7	1.2	-3.67	4.17	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✔	8GUD	34273	2022-12-11	2022-09-11	2.62	2.98	2.83	3.1	0.008	0.79	0.0	0.05	14.80	0.01	2.116	20.53	0.00	6.0	94.0	0.0	-2.12	0.52	0.56	1.45	3.1	0.003	0.65	0.0	0.04	17.30	0.00	2.157	17.22	2.51	4.9	95.1	0.0	-1.29	1.14	0.49	0.57	1.10	6814	835	1	0	1	0	0	logfile

• ← previous
• Page 4 of 443
• next →