Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K8A	22724	2021-10-03	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	15.82	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.004	0.86	0.0	0.04	16.05	0.01	2.176	14.75	0.34	4.0	95.8	0.1	-0.58	0.53	0.42	0.55	0.24	5513	723	1	0	0	0	0	logfile
✔	7NCH	12266	2021-10-03	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.74	2.0	0.05	15.94	0.00	1.909	15.18	0.00	13.7	86.3	0.0	-4.43	1.79	0.66	0.55	1.69	11292	816	12	0	0	0	5796	logfile
✔	6TGC	10498	2021-10-07	2019-11-15	4.1	4.96	—	4.1	0.016	1.86	2.0	0.08	20.20	0.01	1.835	97.73	15.44	22.0	76.1	1.9	-5.63	0.71	0.56	—	3.9	0.007	0.93	1.0	0.05	14.29	0.01	1.611	24.34	0.17	7.5	92.3	0.2	-1.02	1.48	0.72	0.55	—	33282	3806	6	0	808	0	0	logfile
✔	6G90	4364	2021-10-04	2018-04-10	4.0	4.12	—	3.9	0.009	1.30	2.0	0.07	12.62	0.03	1.687	18.71	0.57	7.8	91.4	0.8	-3.55	0.51	0.41	—	3.9	0.011	1.12	3.0	0.04	15.14	0.01	1.592	19.13	0.17	7.3	92.4	0.3	-0.56	3.85	0.56	0.55	—	65050	6796	43	474	223	0	0	logfile
✔	6B3R	7042	2021-10-06	2017-09-22	3.8	3.79	—	3.8	0.006	1.04	0.0	0.06	10.17	0.01	2.247	4.81	0.25	8.1	91.9	0.0	-4.41	0.35	0.53	1.24	3.8	0.012	1.15	5.0	0.05	15.91	0.01	2.091	13.35	0.28	6.7	93.2	0.1	-0.18	1.11	0.39	0.55	1.51	35718	4506	6	0	48	0	0	logfile
✔	7NSU	12577	2021-10-06	2021-03-08	4.7	3.48	4.74	4.1	0.003	0.70	0.0	0.05	14.51	0.00	1.833	10.65	3.66	4.9	95.0	0.1	-1.84	0.58	0.49	—	2.4	0.003	0.66	0.0	0.04	12.82	0.00	1.740	15.19	0.10	5.5	94.5	0.0	-1.10	2.63	0.61	0.55	—	36070	2410	6	0	0	0	17527	logfile
✔	7NiU	12365	2021-10-04	2021-02-14	4.2	3.68	—	3.5	0.012	1.04	0.0	0.23	15.91	0.01	2.110	33.18	1.67	14.7	85.0	0.2	-5.18	0.57	0.58	—	3.5	0.003	0.80	0.0	0.08	14.70	0.00	2.106	15.38	0.18	6.1	93.9	0.0	-1.86	1.65	0.56	0.56	—	15495	2015	6	0	2	0	0	logfile
✔	6QG2	4545	2021-10-07	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.66	7.64	13.2	83.4	3.4	-1.88	0.58	0.38	—	4.5	0.003	0.73	0.0	0.04	15.37	0.00	2.113	14.87	0.00	8.9	90.5	0.6	-1.78	1.76	0.70	0.57	—	38664	4961	16	0	0	0	0	logfile
✔	6RAX	4786	2021-10-07	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	23.64	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.011	1.15	4.0	0.05	18.63	0.01	1.587	22.27	0.25	13.1	86.8	0.0	-3.21	1.54	0.58	0.57	0.30	40970	5062	19	29	6	0	0	logfile
✔	7BWA	30231	2021-10-03	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	40.57	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.003	0.72	0.0	0.05	14.14	0.00	2.134	18.68	0.00	7.3	92.7	0.0	-2.85	1.69	0.77	0.57	—	11670	1444	4	0	0	0	0	logfile
✔	6iZR	9757	2021-10-06	2018-12-20	4.7	4.86	—	4.7	0.004	0.90	0.0	0.05	11.50	0.01	2.086	6.63	0.26	6.9	93.1	0.0	-4.07	0.68	0.78	—	4.7	0.004	0.82	0.0	0.05	13.70	0.00	1.994	23.34	0.32	5.9	94.1	0.0	-0.29	2.05	0.61	0.57	—	84360	10470	60	0	60	0	0	logfile
✔	6ZFo	11184	2021-10-04	2020-06-17	4.4	4.43	—	4.4	0.003	0.55	0.0	0.04	10.40	0.00	2.157	3.47	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	4.4	0.004	0.64	0.0	0.04	11.38	0.01	1.911	14.78	0.00	7.4	92.6	0.0	-0.83	1.63	0.52	0.57	—	18988	1252	8	0	2	0	9310	logfile
✔	6YBV	10774	2021-10-03	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	17.69	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.003	0.74	0.0	0.04	18.08	0.00	2.081	15.09	0.80	8.1	91.8	0.1	-2.21	3.41	0.33	0.58	0.70	6731	769	5	78	0	0	0	logfile
✔	7JMi	22395	2021-10-04	2020-07-31	4.5	6.62	—	4.3	0.004	0.92	0.0	0.05	10.07	0.01	1.373	7.44	0.31	10.5	89.3	0.2	-4.79	0.58	0.34	—	4.4	0.003	0.70	0.0	0.04	11.23	0.00	2.165	13.10	0.00	9.2	90.8	0.0	-1.49	0.87	0.77	0.58	—	120756	13500	12	0	3608	0	0	logfile
✔	7JMG	22393	2021-10-05	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.33	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	4.6	0.002	0.68	0.0	0.04	11.03	0.00	2.046	11.07	0.00	8.1	91.9	0.0	-1.52	0.87	0.77	0.58	—	120756	13500	12	0	3608	0	0	logfile
✔	5JUL	8177	2021-10-03	2016-05-10	4.4	4.41	—	4.3	0.012	1.51	16.0	0.06	10.59	0.01	1.568	32.86	0.18	16.6	80.8	2.5	-4.96	0.67	0.54	—	4.3	0.009	1.04	8.0	0.05	13.06	0.00	1.507	18.88	0.02	13.7	85.4	0.9	-3.47	2.13	0.69	0.58	—	161200	19728	32	0	16	0	0	logfile
✔	6PB5	20287	2021-10-05	2019-06-13	4.52	5.95	—	8.8	0.011	1.31	0.0	0.06	16.15	0.01	1.966	13.12	0.26	11.6	87.7	0.7	-4.55	0.58	0.19	—	4.0	0.004	0.75	0.0	0.04	16.83	0.01	1.801	27.02	0.00	12.1	87.8	0.1	-2.89	3.23	0.77	0.59	—	69696	4084	13	156	5	0	34319	logfile
✔	6S13	10079	2021-10-17	2019-06-18	3.58	3.67	—	5.8	0.023	1.27	2.0	0.06	22.26	0.01	1.596	18.72	21.29	20.5	79.4	0.1	-5.98	0.56	0.28	0.14	3.6	0.012	0.87	2.0	0.04	21.78	0.01	1.315	28.12	1.37	18.9	81.1	0.0	-4.60	2.82	0.68	0.59	0.75	233957	5608	52	4559	0	0	93218	logfile
✔	6EU2	3957	2021-10-07	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.05	0.40	13.0	86.5	0.5	-5.22	0.27	0.05	0.18	3.4	0.008	0.98	0.0	0.04	15.47	0.01	2.016	12.64	0.42	11.2	88.6	0.3	-2.28	1.55	0.62	0.59	0.35	38329	4825	22	0	7	0	0	logfile
✔	6K0A	30036	2021-10-05	2019-05-05	4.6	4.81	—	4.5	0.003	0.70	0.0	0.04	15.45	0.01	2.316	2.94	0.83	5.3	94.7	0.0	-4.65	0.80	0.60	—	4.5	0.002	0.63	0.0	0.03	15.42	0.00	2.109	17.25	0.00	6.7	93.3	0.0	-0.20	3.53	0.78	0.59	—	22276	1364	14	516	2	0	0	logfile

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