Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FTE	29424	2023-11-16	2023-01-12	3.8	3.91	3.67	3.8	0.003	0.63	0.0	0.04	12.35	0.00	2.203	12.31	5.56	3.4	96.6	0.0	0.06	0.48	0.50	0.06	3.8	0.003	0.73	0.0	0.04	14.62	0.00	2.147	8.37	0.44	6.4	93.6	0.0	1.70	1.58	0.56	0.57	0.63	14564	2046	22	0	0	0	0	logfile
✔	3JAU	6366	2023-11-15	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	7X3J	32989	2023-11-15	2022-03-01	4.2	3.84	4.27	3.9	0.004	0.86	1.0	0.05	14.04	0.00	1.136	5.37	0.10	3.2	96.8	0.0	-5.53	0.59	0.53	—	3.8	0.003	0.68	0.0	0.04	14.31	0.00	1.972	12.43	0.04	4.5	95.5	0.0	-0.98	1.63	0.61	0.57	—	63188	8209	32	0	16	0	0	logfile
✔	7UWK	26834	2023-11-16	2022-05-03	4.4	3.30	4.35	2.2	0.004	0.80	0.0	0.05	12.35	0.01	2.131	18.13	0.11	5.0	95.0	0.0	-1.76	0.66	0.54	—	2.3	0.005	0.80	0.0	0.05	12.71	0.01	2.083	22.39	0.11	7.5	92.5	0.0	-2.04	1.87	0.66	0.57	—	16064	2059	12	0	0	0	0	logfile
✔	7V4J	31713	2023-11-14	2021-08-13	3.5	3.64	—	3.8	0.003	0.67	0.0	0.05	13.95	0.01	2.092	19.96	0.00	8.2	91.8	0.0	-1.60	0.61	0.52	1.21	3.8	0.003	0.73	0.0	0.05	16.29	0.01	2.111	19.55	0.28	6.6	93.4	0.0	-1.29	0.74	0.62	0.57	1.18	9850	1275	5	0	0	0	0	logfile
✔	6G90	4364	2023-11-15	2018-04-10	4.0	4.12	—	3.9	0.009	1.30	2.0	0.07	12.73	0.03	1.687	19.01	0.57	7.8	91.4	0.8	-3.55	0.51	0.41	—	3.9	0.004	0.90	0.0	0.04	15.35	0.01	2.101	18.34	0.33	7.3	92.4	0.3	-0.87	3.85	0.58	0.57	—	65050	6796	43	474	223	0	0	logfile
✔	7V6N	31743	2023-11-21	2021-08-20	3.99	2.98	—	3.3	0.013	1.54	22.0	0.11	13.59	0.00	1.225	8.65	8.11	4.0	94.9	1.1	1.46	0.71	0.48	0.48	2.8	0.004	0.78	0.0	0.04	14.31	0.00	2.045	18.53	0.30	6.9	92.8	0.3	-1.34	1.52	0.76	0.57	1.18	34448	4663	9	0	0	0	0	logfile
✔	7U13	26276	2023-11-13	2022-02-19	2.9	3.67	—	4.2	0.018	2.43	0.0	0.07	16.46	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.005	1.02	0.0	0.06	17.50	0.00	2.138	20.90	3.94	11.8	88.2	0.0	-4.59	6.73	0.33	0.57	1.35	3456	405	6	0	12	0	0	logfile
✔	8iBN	35344	2023-11-14	2023-02-10	3.03	3.55	3.13	3.5	0.007	0.99	0.0	0.06	13.66	0.00	2.296	8.00	0.00	4.0	96.0	0.0	-1.98	0.60	0.53	0.83	3.5	0.003	0.62	0.0	0.05	15.79	0.00	2.053	15.49	0.45	4.1	95.9	0.0	-0.82	1.18	0.62	0.57	0.91	8940	1224	8	0	8	0	0	logfile
✔	6Q2N	20575	2023-11-15	2019-08-08	4.4	4.43	—	4.3	0.008	1.24	0.0	0.06	9.78	0.01	1.449	11.01	0.68	9.6	90.2	0.2	-4.25	0.60	0.56	—	4.3	0.004	0.81	0.0	0.05	11.58	0.01	2.192	17.37	0.00	9.9	90.1	0.0	-2.55	0.96	0.61	0.58	—	13140	1678	8	0	8	0	0	logfile
✔	7BZX	30262	2023-11-13	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.8	0.006	1.18	0.0	0.05	9.20	0.01	2.035	27.91	0.00	24.1	75.8	0.1	-4.93	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	5Li4	4052	2023-11-17	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.1	0.004	1.04	0.0	0.05	13.71	0.01	1.950	32.75	0.09	15.2	83.8	1.0	-3.85	4.19	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	7D7R	30610	2023-11-14	2020-10-05	4.0	4.04	—	4.0	0.004	0.96	0.0	0.05	14.87	0.01	2.270	5.25	0.36	3.6	96.2	0.2	-3.66	0.51	0.58	—	3.9	0.003	0.85	0.0	0.04	15.86	0.00	2.198	16.53	0.91	3.4	96.6	0.0	0.50	1.32	0.50	0.58	—	7680	1160	2	0	0	0	0	logfile
✔	7NiV	12366	2023-11-16	2021-02-14	3.6	3.27	—	3.4	0.008	1.04	0.0	0.06	15.42	0.01	2.197	22.51	0.89	9.6	90.3	0.0	-5.19	0.53	0.62	1.53	3.4	0.004	0.70	0.0	0.04	16.43	0.00	2.070	13.57	0.59	6.2	93.8	0.0	-1.30	1.09	0.51	0.58	0.89	15724	2020	6	0	8	0	0	logfile
✔	6ZD0	11172	2023-11-14	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.5	0.003	0.78	0.0	0.04	5.38	0.00	2.341	5.89	0.00	15.0	84.6	0.4	-4.68	2.32	0.61	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	6CS1	7579	2023-11-19	2018-03-19	4.6	4.79	4.84	6.8	0.006	0.92	0.0	0.06	8.77	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.007	1.10	1.0	0.06	11.78	0.01	1.900	35.89	0.00	11.7	88.3	0.0	-3.21	1.93	0.71	0.58	—	25995	3202	27	0	75	0	0	logfile
✔	6Q2J	20572	2023-11-16	2019-08-08	4.1	4.32	—	4.1	0.006	0.98	0.0	0.06	8.67	0.01	1.677	4.24	0.13	5.0	94.8	0.1	-3.22	0.52	0.28	—	4.2	0.003	0.79	0.0	0.05	12.08	0.00	2.100	11.28	0.00	5.5	94.5	0.0	-1.64	2.03	0.68	0.58	—	13796	1738	8	0	22	0	0	logfile
✔	8B3A	15824	2023-11-13	2022-09-16	3.8	3.66	2.91	4.1	0.122	1.89	0.0	0.10	27.06	0.09	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.078	6.51	29.0	0.43	19.99	0.05	1.652	313.51	3.81	47.3	8.0	44.7	-10.72	2.68	0.43	0.58	2.94	2010	210	30	0	60	0	0	logfile
✔	7BC5	12139	2023-11-13	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.72	0.0	0.04	17.04	0.00	2.243	14.42	0.76	7.5	92.5	0.0	-2.75	1.30	0.23	0.58	0.92	1200	161	1	0	0	0	0	logfile
✔	7NCJ	12268	2023-11-15	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.5	0.003	0.60	1.0	0.05	13.98	0.00	1.897	13.84	0.00	11.2	88.8	0.0	-2.88	1.39	0.69	0.58	—	10860	774	12	0	0	0	5586	logfile

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