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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WoG | 32651 | 2024-03-10 | 2022-01-21 | 4.06 | 2.95 | — | 2.0 | 0.001 | 0.41 | 0.0 | 0.04 | 8.09 | 0.00 | 2.293 | 10.22 | 3.78 | 8.0 | 92.0 | 0.0 | -3.98 | 0.51 | 0.51 | — | 2.2 | 0.003 | 0.72 | 0.0 | 0.04 | 10.77 | 0.00 | 2.076 | 19.52 | 0.00 | 12.4 | 87.6 | 0.0 | -2.57 | 0.92 | 0.54 | 0.54 | — | 3362 | 433 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2024-03-23 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.12 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.005 | 0.87 | 0.0 | 0.04 | 15.69 | 0.00 | 1.528 | 24.67 | 2.06 | 5.7 | 94.2 | 0.0 | -0.64 | 2.00 | 0.50 | 0.54 | 0.14 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V6S | 21073 | 2024-03-10 | 2019-12-05 | 4.3 | 3.91 | — | 3.8 | 0.006 | 0.75 | 1.0 | 0.05 | 13.81 | 0.00 | 2.102 | 10.50 | 0.63 | 5.0 | 94.9 | 0.1 | -4.11 | 0.58 | 0.50 | — | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 13.93 | 0.00 | 2.101 | 9.84 | 0.03 | 3.2 | 96.7 | 0.0 | -0.18 | 1.12 | 0.58 | 0.55 | — | 106422 | 13155 | 53 | 14 | 721 | 0 | 0 | logfile |
✔ | 7WGC | 32483 | 2024-03-11 | 2021-12-28 | 3.6 | 3.85 | — | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 14.72 | 0.00 | 2.191 | 10.26 | 0.00 | 3.8 | 96.2 | 0.0 | -0.11 | 0.56 | 0.55 | 1.21 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 16.13 | 0.00 | 2.128 | 13.40 | 2.00 | 5.3 | 94.7 | 0.0 | 0.00 | 0.36 | 0.56 | 0.55 | 0.77 | 6527 | 795 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7LF0 | 23296 | 2024-03-22 | 2021-01-15 | 3.68 | 2.09 | 3.76 | 3.7 | 0.008 | 1.10 | 0.0 | 0.06 | 10.18 | 0.01 | 2.157 | 7.39 | 1.09 | 11.4 | 87.8 | 0.8 | -4.41 | 0.51 | 0.54 | 1.30 | 3.7 | 0.005 | 0.98 | 4.0 | 0.05 | 14.62 | 0.01 | 2.072 | 20.98 | 3.54 | 11.3 | 88.5 | 0.2 | -2.42 | 0.94 | 0.52 | 0.55 | 0.83 | 34548 | 4542 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YEG | 33772 | 2024-03-11 | 2022-07-05 | 3.73 | 3.29 | 3.71 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 13.19 | 0.00 | 2.191 | 5.16 | 0.37 | 3.1 | 96.8 | 0.0 | -4.62 | 0.61 | 0.57 | 0.60 | 3.5 | 0.004 | 0.70 | 0.0 | 0.04 | 15.52 | 0.00 | 2.118 | 11.70 | 2.16 | 5.5 | 94.5 | 0.0 | -1.67 | 3.05 | 0.59 | 0.55 | 1.08 | 49974 | 6306 | 24 | 0 | 51 | 0 | 0 | logfile |
✔ | 8DGJ | 27427 | 2024-03-16 | 2022-06-23 | 4.02 | 4.32 | 4.05 | 4.1 | 0.007 | 1.24 | 2.0 | 0.06 | 14.25 | 0.01 | 2.213 | 11.07 | 0.13 | 7.4 | 92.3 | 0.3 | -2.71 | 0.69 | 0.56 | — | 4.1 | 0.004 | 0.74 | 0.0 | 0.04 | 14.02 | 0.01 | 2.063 | 20.23 | 0.00 | 7.6 | 92.3 | 0.1 | -0.59 | 0.60 | 0.68 | 0.55 | — | 13574 | 1689 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G3H | 29699 | 2024-03-11 | 2023-02-07 | 3.6 | 3.80 | 3.20 | 3.8 | 0.016 | 2.32 | 9.0 | 0.26 | 17.25 | 0.02 | 2.228 | 13.55 | 4.37 | 8.7 | 91.3 | 0.0 | -4.03 | 0.59 | 0.52 | 0.65 | 3.8 | 0.004 | 1.08 | 0.0 | 0.09 | 17.67 | 0.00 | 2.159 | 17.96 | 2.86 | 5.0 | 95.0 | 0.0 | -1.41 | 2.38 | 0.62 | 0.55 | 0.87 | 6541 | 841 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8RBX | 19038 | 2024-03-16 | 2023-12-05 | 4.1 | 4.04 | 3.99 | 7.7 | 0.007 | 0.91 | 2.0 | 0.07 | 18.74 | 0.01 | 2.138 | 5.09 | 0.56 | 4.8 | 95.2 | 0.0 | -0.02 | 0.71 | 0.32 | — | 3.0 | 0.010 | 1.06 | 1.0 | 0.05 | 16.40 | 0.01 | 1.822 | 33.06 | 0.00 | 6.7 | 93.1 | 0.2 | -0.59 | 1.81 | 0.77 | 0.55 | — | 129226 | 16906 | 56 | 326 | 76 | 0 | 0 | logfile |
✔ | 6HDD | 0204 | 2024-03-20 | 2018-08-17 | 4.5 | 5.28 | — | 4.4 | 0.009 | 1.36 | 3.0 | 0.08 | 12.60 | 0.01 | 2.220 | 12.08 | 1.07 | 18.3 | 81.6 | 0.1 | -6.11 | 0.74 | 0.42 | — | 10.0 | 0.005 | 1.02 | 0.0 | 0.05 | 13.60 | 0.01 | 1.496 | 26.71 | 0.00 | 17.2 | 82.6 | 0.2 | -3.09 | 5.60 | 0.87 | 0.55 | — | 28154 | 3605 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAX | 4786 | 2024-03-24 | 2019-04-08 | 3.99 | 4.07 | 3.97 | 4.1 | 0.011 | 1.46 | 27.0 | 0.13 | 18.19 | 0.01 | 1.308 | 23.93 | 6.70 | 19.2 | 80.3 | 0.5 | -5.61 | 0.55 | 0.58 | 0.25 | 4.0 | 0.005 | 0.90 | 1.0 | 0.05 | 18.58 | 0.01 | 1.957 | 18.48 | 4.22 | 12.8 | 87.2 | 0.0 | -3.18 | 1.44 | 0.57 | 0.55 | 0.29 | 40970 | 5062 | 19 | 29 | 6 | 0 | 0 | logfile |
✔ | 8T23 | 40979 | 2024-03-11 | 2023-06-05 | 3.87 | 4.12 | 4.24 | 7.5 | 0.005 | 1.00 | 0.0 | 0.05 | 19.22 | 0.01 | 2.136 | 16.85 | 0.59 | 11.9 | 88.1 | 0.0 | -3.06 | 0.59 | 0.48 | 0.19 | 7.3 | 0.003 | 0.82 | 0.0 | 0.05 | 18.12 | 0.01 | 2.123 | 17.32 | 3.81 | 11.5 | 88.5 | 0.0 | -2.57 | 1.42 | 0.62 | 0.55 | -0.26 | 6451 | 781 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7UBB | 26437 | 2024-03-11 | 2022-03-14 | 4.5 | 5.42 | 4.95 | 5.3 | 0.002 | 0.68 | 0.0 | 0.04 | 14.32 | 0.00 | 2.231 | 14.38 | 0.00 | 0.9 | 99.1 | 0.0 | -1.04 | 0.40 | 0.59 | — | 5.3 | 0.002 | 0.58 | 0.0 | 0.04 | 15.00 | 0.00 | 2.247 | 9.30 | 0.00 | 1.8 | 98.2 | 0.0 | -0.99 | 0.79 | 0.38 | 0.55 | — | 7448 | 896 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6G90 | 4364 | 2024-03-13 | 2018-04-10 | 4.0 | 4.12 | — | 3.9 | 0.009 | 1.30 | 2.0 | 0.07 | 16.32 | 0.03 | 1.687 | 19.01 | 0.57 | 7.8 | 91.4 | 0.8 | -3.55 | 0.51 | 0.41 | — | 3.9 | 0.003 | 0.87 | 0.0 | 0.04 | 17.79 | 0.01 | 2.033 | 17.07 | 1.96 | 7.2 | 92.5 | 0.3 | -0.61 | 3.68 | 0.57 | 0.55 | — | 65050 | 6796 | 43 | 474 | 223 | 0 | 0 | logfile |
✔ | 6QG2 | 4545 | 2024-03-23 | 2019-01-10 | 4.55 | 4.79 | 4.48 | 4.5 | 0.009 | 1.44 | 35.0 | 0.09 | 18.65 | 0.00 | 1.236 | 4.68 | 7.64 | 13.2 | 83.4 | 3.4 | -1.88 | 0.58 | 0.37 | — | 4.6 | 0.003 | 0.75 | 0.0 | 0.05 | 15.45 | 0.00 | 2.113 | 16.88 | 0.00 | 10.5 | 88.9 | 0.6 | -1.75 | 1.67 | 0.69 | 0.56 | — | 38664 | 4961 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DRQ | 27681 | 2024-03-10 | 2022-07-21 | 4.16 | 4.28 | 4.60 | 4.1 | 0.004 | 0.89 | 0.0 | 0.05 | 15.60 | 0.01 | 2.283 | 15.85 | 0.00 | 5.9 | 94.1 | 0.0 | -3.30 | 0.39 | 0.56 | — | 4.1 | 0.004 | 0.83 | 0.0 | 0.05 | 13.36 | 0.01 | 2.086 | 24.08 | 0.00 | 7.7 | 92.3 | 0.0 | -2.83 | 1.99 | 0.42 | 0.56 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y0o | 33551 | 2024-03-10 | 2022-06-05 | 4.4 | 3.19 | 4.10 | 3.0 | 0.004 | 0.93 | 0.0 | 0.06 | 15.07 | 0.01 | 2.254 | 9.72 | 0.00 | 9.8 | 90.1 | 0.2 | -3.24 | 0.65 | 0.55 | — | 3.0 | 0.003 | 0.70 | 0.0 | 0.05 | 15.14 | 0.00 | 2.112 | 16.85 | 0.00 | 10.5 | 89.5 | 0.0 | -3.12 | 1.13 | 0.66 | 0.56 | — | 4185 | 541 | 6 | 0 | 0 | 18 | 0 | logfile |
✔ | 3LoS | 5137 | 2024-03-12 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.005 | 1.29 | 0.0 | 0.06 | 15.90 | 0.01 | 2.091 | 33.18 | 0.00 | 21.9 | 74.2 | 3.9 | -4.38 | 1.32 | 0.63 | 0.56 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6B3R | 7042 | 2024-03-23 | 2017-09-22 | 3.8 | 3.79 | — | 3.8 | 0.006 | 1.04 | 0.0 | 0.06 | 10.17 | 0.01 | 2.247 | 4.85 | 0.25 | 8.1 | 91.9 | 0.0 | -4.41 | 0.35 | 0.53 | 1.24 | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 15.55 | 0.00 | 2.109 | 12.52 | 2.67 | 7.1 | 92.9 | 0.0 | -0.26 | 0.99 | 0.40 | 0.56 | 1.42 | 35718 | 4506 | 6 | 0 | 48 | 0 | 0 | logfile |
✔ | 7FiJ | 31599 | 2024-03-10 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.3 | 0.006 | 0.86 | 0.0 | 0.05 | 12.15 | 0.00 | 2.164 | 13.33 | 11.25 | 16.5 | 83.5 | 0.0 | -1.70 | 0.74 | 0.62 | 0.56 | 2.72 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |