Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KBB	22788	2023-04-20	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.003	0.72	0.0	0.04	14.59	0.01	2.110	14.66	0.00	6.7	93.3	0.0	-0.71	0.66	0.58	0.60	—	6422	812	7	0	0	0	0	logfile
✔	7ZNN	14812	2023-04-23	2022-04-21	4.8	7.93	6.02	4.7	0.003	0.80	0.0	0.04	14.16	0.00	2.316	6.53	0.93	7.2	92.6	0.2	-4.19	0.87	0.70	—	4.7	0.005	0.79	0.0	0.04	13.49	0.00	2.057	36.36	0.00	6.5	93.3	0.1	-1.84	2.05	0.87	0.60	—	14606	1814	4	0	1	0	0	logfile
✔	7KXY	23067	2023-04-21	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.003	0.82	0.0	0.05	14.45	0.01	2.088	21.63	0.10	15.0	84.9	0.1	-4.55	1.26	0.63	0.60	—	9510	1181	2	0	0	0	0	logfile
✔	5ZAL	6905	2023-04-22	2018-02-07	4.7	4.44	—	3.8	0.008	1.44	1.0	0.07	12.67	0.01	2.215	19.06	0.97	16.1	83.2	0.7	-5.19	0.87	0.74	—	3.8	0.005	0.95	0.0	0.05	13.33	0.01	2.089	38.66	0.00	16.3	83.5	0.2	-3.24	1.62	0.84	0.60	—	12346	1389	3	58	0	0	0	logfile
✔	7X13	32933	2023-04-25	2022-02-23	3.7	3.38	—	3.3	0.002	0.51	0.0	0.04	14.42	0.00	2.152	8.27	0.04	1.7	98.3	0.0	2.42	0.50	0.55	1.11	3.3	0.003	0.63	0.0	0.04	16.22	0.00	2.101	12.23	0.61	3.2	96.8	0.0	1.37	1.02	0.52	0.60	1.32	21248	2668	12	0	0	0	0	logfile
✔	6i1X	0326	2023-04-20	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.003	0.77	0.0	0.05	16.37	0.00	2.134	17.07	0.28	4.8	95.0	0.2	-0.88	1.06	0.65	0.60	0.83	54915	7290	15	0	0	0	0	logfile
✔	8ETH	24409	2023-04-28	2022-10-17	3.8	2.97	—	2.9	0.006	0.62	0.0	0.04	16.49	0.01	2.088	10.10	0.53	5.2	94.6	0.2	-0.47	0.63	0.61	2.70	2.9	0.003	0.56	0.0	0.04	16.53	0.00	2.077	10.66	0.48	4.3	95.5	0.2	0.39	1.11	0.63	0.60	2.35	77577	6161	42	1508	1	0	0	logfile
✔	6BGJ	7096	2023-04-20	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.55	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.004	0.90	0.0	0.05	14.15	0.00	2.083	19.86	0.14	13.1	86.6	0.3	-1.19	1.40	0.49	0.60	1.38	7418	980	4	0	2	0	0	logfile
✔	7QD6	13909	2023-04-25	2021-11-26	3.0	3.13	3.04	3.0	0.005	0.89	0.0	0.05	22.28	0.01	2.270	4.29	0.00	2.6	97.4	0.0	-0.81	0.68	0.61	1.62	3.0	0.003	0.62	0.0	0.04	23.35	0.00	2.102	11.89	1.81	3.5	96.5	0.0	1.55	0.55	0.66	0.60	1.71	19112	1816	8	216	0	0	0	logfile
✔	6VWH	21416	2023-04-20	2020-02-19	4.26	4.65	—	4.3	0.006	1.06	0.0	0.06	13.74	0.01	2.223	10.17	0.82	6.7	92.5	0.8	-1.73	0.69	0.57	—	4.4	0.003	0.67	0.0	0.04	12.46	0.00	1.934	10.88	0.00	9.6	90.2	0.2	-1.61	1.52	0.71	0.60	—	8461	539	2	0	0	0	4139	logfile
✔	7BWA	30231	2023-04-22	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	41.05	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.003	0.74	0.0	0.05	14.14	0.00	2.136	19.42	0.00	7.9	92.1	0.0	-2.97	1.69	0.79	0.60	—	11670	1444	4	0	0	0	0	logfile
✔	7Y1R	33571	2023-04-20	2022-06-08	4.01	2.49	4.09	3.9	0.003	0.70	0.0	0.04	13.08	0.00	2.227	8.79	0.00	5.8	94.2	0.0	-2.79	0.59	0.55	—	2.1	0.003	0.78	0.0	0.04	13.24	0.01	2.208	11.89	0.00	8.3	91.7	0.0	-2.56	1.24	0.63	0.61	—	8565	1041	11	0	20	0	0	logfile
✔	7MFD	23813	2023-04-21	2021-04-09	3.66	3.14	—	3.1	0.004	0.67	1.0	0.04	15.46	0.00	2.112	17.69	0.20	7.1	92.9	0.0	-2.17	0.68	0.61	1.02	3.1	0.005	0.78	0.0	0.05	17.34	0.00	2.116	20.77	0.31	8.3	91.7	0.0	-2.31	0.44	0.68	0.61	0.90	9127	1147	6	0	3	0	0	logfile
✔	7V4L	31715	2023-04-21	2021-08-13	3.4	3.80	—	3.8	0.005	0.82	1.0	0.06	15.20	0.01	2.102	18.13	3.71	8.8	90.6	0.5	-2.60	0.55	0.55	1.34	3.8	0.003	0.72	0.0	0.05	16.09	0.01	2.154	17.48	0.49	6.7	93.2	0.1	-2.54	0.75	0.58	0.61	1.26	9345	1190	5	0	0	0	0	logfile
✔	7JSH	22454	2023-04-20	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	8HHY	34807	2023-04-28	2022-11-17	2.77	2.97	2.80	2.9	0.004	0.69	0.0	0.05	13.81	0.00	2.074	14.92	0.00	5.6	94.3	0.1	-1.92	0.55	0.54	1.90	2.9	0.003	0.64	0.0	0.04	16.08	0.00	2.079	14.07	2.11	4.7	95.3	0.0	-1.60	0.41	0.60	0.61	1.59	27420	3483	16	0	32	0	0	logfile
✔	6XMX	22265	2023-04-23	2020-07-01	3.7	3.86	3.66	3.8	0.012	1.12	0.0	0.06	16.36	0.01	2.154	7.37	0.89	1.7	98.3	0.0	-1.34	0.61	0.54	1.48	3.8	0.003	0.59	0.0	0.04	17.24	0.00	1.936	14.13	0.22	2.7	97.3	0.0	1.87	1.31	0.63	0.61	0.82	16014	976	16	0	8	0	7942	logfile
✔	6KLB	0705	2023-04-25	2019-07-30	4.1	4.14	—	4.0	0.004	0.90	1.0	0.05	11.32	0.01	2.015	8.05	0.31	9.0	90.8	0.2	-5.01	0.66	0.55	—	4.0	0.004	0.78	0.0	0.04	13.45	0.00	1.847	17.45	0.00	11.0	89.0	0.0	-1.98	2.91	0.69	0.61	—	21384	2467	11	50	4	11	0	logfile
✔	8BC0	15958	2023-04-21	2022-10-14	3.09	3.54	2.95	3.5	0.004	0.59	0.0	0.04	13.16	0.01	2.052	17.19	7.06	5.0	95.0	0.0	0.18	0.54	0.60	1.08	3.5	0.005	0.80	0.0	0.05	15.71	0.01	2.043	25.99	0.34	6.2	93.8	0.0	-0.55	0.85	0.55	0.61	1.12	10861	1316	4	0	6	0	0	logfile
✔	6R9B	4769	2023-04-27	2019-04-03	3.8	3.76	—	3.6	0.003	0.88	1.0	0.06	9.76	0.01	2.296	4.54	0.70	8.0	91.8	0.2	-4.57	0.63	0.51	0.46	3.7	0.004	0.85	0.0	0.05	15.31	0.00	2.124	14.93	0.70	9.8	90.1	0.1	-2.04	1.63	0.70	0.61	0.99	25880	3401	7	0	0	0	0	logfile

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