Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N7S	0362	2023-08-12	2018-11-28	4.6	4.47	—	4.4	0.008	1.20	0.0	0.07	14.87	0.01	1.812	8.33	1.04	12.5	87.5	0.0	-5.07	0.69	0.54	—	4.3	0.003	0.71	0.0	0.04	14.71	0.00	1.879	15.91	0.00	5.3	94.7	0.0	-2.15	1.90	0.71	0.59	—	12783	1607	11	13	8	0	0	logfile
✔	6PWC	20505	2023-08-09	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.004	0.75	0.0	0.04	6.37	0.00	2.094	19.59	0.00	7.2	92.8	0.0	-0.38	1.57	0.61	0.59	—	5879	1055	5	0	0	0	0	logfile
✔	6XQB	22288	2023-08-14	2020-07-09	3.4	4.22	—	3.9	0.012	1.28	0.0	0.06	12.24	0.01	2.069	13.97	0.23	15.2	84.8	0.0	-5.15	0.75	0.57	0.58	3.8	0.003	0.67	0.0	0.04	14.08	0.00	1.948	19.66	0.11	8.7	91.3	0.0	-1.84	1.28	0.76	0.59	0.45	16323	1008	7	15	3	0	7987	logfile
✔	6ZFo	11184	2023-08-15	2020-06-17	4.4	4.43	—	4.4	0.003	0.56	0.0	0.04	10.41	0.00	2.157	3.58	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	4.4	0.003	0.60	0.0	0.04	11.46	0.00	1.946	11.31	0.00	5.3	94.7	0.0	-1.00	1.56	0.53	0.59	—	18988	1252	8	0	2	0	9310	logfile
✔	6CRZ	7577	2023-08-18	2018-03-19	3.3	3.42	3.35	4.5	0.007	1.01	0.0	0.06	9.26	0.01	2.254	6.77	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.3	0.004	0.75	0.0	0.05	13.80	0.00	2.093	12.74	0.58	6.4	93.6	0.0	-1.78	1.50	0.62	0.59	0.81	25909	3205	25	0	66	0	0	logfile
✔	6XS6	22301	2023-08-15	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.003	0.59	0.0	0.04	15.91	0.00	2.160	8.43	0.15	5.1	94.9	0.0	-0.95	0.37	0.57	0.59	2.19	18294	2357	3	0	0	0	0	logfile
✔	7X6o	33024	2023-08-16	2022-03-07	3.5	2.65	—	3.8	0.002	0.49	0.0	0.04	8.09	0.00	2.283	3.17	1.82	2.0	98.0	0.0	-3.07	0.60	0.53	0.73	2.1	0.004	0.82	0.0	0.05	12.86	0.00	2.103	19.06	0.29	4.1	95.9	0.0	-1.08	1.58	0.64	0.59	0.94	21609	2787	12	0	0	0	0	logfile
✔	7VWZ	32166	2023-08-22	2021-11-12	4.0	2.61	—	2.6	0.006	1.01	0.0	0.06	18.48	0.01	2.148	10.68	1.10	8.8	91.0	0.2	-5.04	0.59	0.58	—	2.6	0.004	0.72	0.0	0.04	19.81	0.01	2.014	17.13	0.52	9.2	90.8	0.0	-2.92	0.80	0.59	0.59	—	34509	4045	11	129	3	0	0	logfile
✔	7o7S	12755	2023-08-25	2021-04-13	4.3	4.69	—	4.4	0.009	1.28	7.0	0.07	16.80	0.02	1.857	21.65	1.09	20.1	79.2	0.7	-5.96	0.75	0.58	—	4.4	0.004	0.92	0.0	0.05	14.96	0.01	2.066	26.19	0.00	13.7	86.2	0.1	-3.99	2.51	0.76	0.60	—	41466	5236	17	0	44	0	0	logfile
✔	7Q3U	13795	2023-08-09	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.004	0.92	0.0	0.04	18.42	0.01	2.192	28.03	0.00	14.8	85.2	0.0	-6.03	2.22	0.34	0.60	2.69	2355	355	5	0	0	0	0	logfile
✔	6BGJ	7096	2023-08-10	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.55	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.004	0.90	0.0	0.05	14.15	0.00	2.083	19.86	0.14	13.1	86.6	0.3	-1.19	1.40	0.49	0.60	1.38	7418	980	4	0	2	0	0	logfile
✔	7ZNN	14812	2023-08-13	2022-04-21	4.8	7.93	6.02	4.7	0.003	0.80	0.0	0.04	14.16	0.00	2.316	6.53	0.93	7.2	92.6	0.2	-4.19	0.87	0.70	—	4.7	0.005	0.79	0.0	0.04	13.49	0.00	2.057	36.36	0.00	6.5	93.3	0.1	-1.84	2.05	0.87	0.60	—	14606	1814	4	0	1	0	0	logfile
✔	6QX9	4665	2023-08-23	2019-03-07	3.28	3.33	—	3.3	0.011	1.31	35.0	0.08	16.06	0.01	0.530	12.89	2.29	5.5	94.1	0.3	-3.26	0.46	0.51	1.65	3.3	0.003	0.67	0.0	0.04	16.72	0.00	1.902	14.77	0.23	4.6	95.3	0.0	-0.27	0.86	0.50	0.60	1.55	137494	15560	77	565	36	0	0	logfile
✔	6VWH	21416	2023-08-10	2020-02-19	4.26	4.65	—	4.3	0.006	1.06	0.0	0.06	13.74	0.01	2.223	10.17	0.82	6.7	92.5	0.8	-1.73	0.69	0.57	—	4.4	0.003	0.67	0.0	0.04	12.46	0.00	1.934	10.88	0.00	9.6	90.2	0.2	-1.61	1.52	0.71	0.60	—	8461	539	2	0	0	0	4139	logfile
✔	7QD6	13909	2023-08-15	2021-11-26	3.0	3.13	3.04	3.0	0.005	0.89	0.0	0.05	22.28	0.01	2.270	4.29	0.00	2.6	97.4	0.0	-0.81	0.68	0.61	1.62	3.0	0.003	0.62	0.0	0.04	23.35	0.00	2.102	11.89	1.81	3.5	96.5	0.0	1.55	0.55	0.66	0.60	1.71	19112	1816	8	216	0	0	0	logfile
✔	7KBB	22788	2023-08-10	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.003	0.72	0.0	0.04	14.59	0.01	2.110	14.66	0.00	6.7	93.3	0.0	-0.71	0.66	0.58	0.60	—	6422	812	7	0	0	0	0	logfile
✔	8CEN	16610	2023-08-25	2023-02-02	3.0	2.82	2.90	2.6	0.004	0.80	1.0	0.05	14.43	0.01	2.160	5.96	0.05	2.9	97.1	0.0	-0.65	0.64	0.53	1.80	2.6	0.003	0.69	0.0	0.04	16.35	0.00	2.012	12.84	1.34	2.9	97.0	0.0	0.70	1.30	0.68	0.60	2.02	101943	12311	58	146	19	0	0	logfile
✔	6VHA	21201	2023-08-09	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.003	0.74	0.0	0.05	13.40	0.00	2.336	12.82	0.00	9.8	90.2	0.0	-4.37	3.38	0.57	0.60	—	2439	321	3	0	0	0	0	logfile
✔	8oMA	16972	2023-08-12	2023-03-31	3.29	2.61	3.29	3.2	0.008	1.30	1.0	0.09	19.39	0.01	1.878	28.14	2.97	7.9	92.1	0.0	-1.51	0.68	0.70	0.46	1.6	0.004	0.78	0.0	0.04	19.82	0.00	1.907	24.91	0.42	6.7	93.3	0.0	-0.58	1.94	0.63	0.60	0.62	11379	1337	6	34	3	0	0	logfile
✔	6i1X	0326	2023-08-10	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.003	0.77	0.0	0.05	16.37	0.00	2.134	17.07	0.28	4.8	95.0	0.2	-0.88	1.06	0.65	0.60	0.83	54915	7290	15	0	0	0	0	logfile

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