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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5VLZ | 8709 | 2021-01-06 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.67 | — | 4.4 | 0.003 | 0.76 | 0.0 | 0.00 | 4.99 | 0.00 | 2.275 | 1.13 | 0.00 | 5.1 | 94.9 | 0.0 | -0.94 | 2.07 | 0.81 | 0.77 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TNG | 10532 | 2021-01-05 | 2019-12-07 | 4.1 | 4.25 | 3.91 | 4.0 | 0.008 | 1.39 | 0.0 | 0.00 | 8.74 | 0.01 | 2.183 | 10.00 | 0.00 | 18.9 | 80.2 | 0.8 | -5.16 | 0.75 | 0.70 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.00 | 7.60 | 0.01 | 2.127 | 17.88 | 0.00 | 25.5 | 74.4 | 0.1 | -4.07 | 0.39 | 0.74 | 0.71 | — | 8240 | 2060 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JG6 | 22312 | 2021-01-06 | 2020-07-18 | 3.7 | 2.39 | 3.79 | 2.2 | 0.008 | 1.40 | 0.0 | 0.00 | 6.55 | 0.01 | 2.433 | 0.00 | 0.00 | 2.9 | 97.0 | 0.1 | -0.59 | 0.62 | 0.54 | — | 2.3 | 0.007 | 1.25 | 0.0 | 0.00 | 8.05 | 0.01 | 2.038 | 4.78 | 0.00 | 17.0 | 82.8 | 0.1 | -2.60 | 1.70 | 0.72 | 0.70 | — | 19320 | 4819 | 20 | 0 | 11 | 0 | 0 | logfile |
✔ | 7JG7 | 22313 | 2021-01-06 | 2020-07-18 | 3.5 | 2.41 | 3.57 | 3.4 | 0.008 | 1.54 | 0.0 | 0.00 | 6.82 | 0.01 | 2.433 | 0.00 | 0.00 | 2.9 | 96.9 | 0.1 | -0.73 | 0.63 | 0.55 | — | 2.3 | 0.007 | 1.25 | 0.0 | 0.00 | 7.52 | 0.01 | 2.117 | 3.42 | 0.00 | 16.0 | 83.8 | 0.2 | -2.10 | 1.67 | 0.73 | 0.71 | — | 19316 | 4818 | 20 | 0 | 11 | 0 | 0 | logfile |
✔ | 6RRS | 4989 | 2021-01-06 | 2019-05-20 | 3.9 | 4.30 | 4.41 | 3.8 | 0.013 | 2.10 | 0.0 | 0.00 | 2.04 | 0.01 | 2.364 | 0.79 | 0.00 | 3.9 | 95.3 | 0.8 | -0.85 | 0.56 | 0.64 | — | 3.8 | 0.004 | 0.80 | 0.0 | 0.00 | 6.71 | 0.00 | 2.212 | 1.98 | 0.00 | 13.7 | 86.3 | 0.0 | -0.97 | 1.80 | 0.69 | 0.74 | — | 93060 | 23220 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oG3 | 20051 | 2021-01-05 | 2019-04-01 | 4.1 | 5.37 | — | 6.5 | 0.005 | 1.53 | 0.0 | 0.00 | 0.93 | 0.00 | 2.539 | 0.00 | 0.00 | 0.0 | 99.2 | 0.8 | 0.27 | 0.46 | 0.48 | — | 6.0 | 0.004 | 0.98 | 0.0 | 0.00 | 7.40 | 0.00 | 2.621 | 32.79 | 0.00 | 9.1 | 90.9 | 0.0 | -1.22 | 2.26 | 0.68 | 0.87 | — | 1215 | 396 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 6YW7 | 10960 | 2021-01-05 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 6.70 | 0.01 | 2.034 | 1.63 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 1.02 | 0.0 | 0.01 | 5.24 | 0.00 | 2.300 | 9.92 | 0.00 | 12.3 | 87.6 | 0.1 | -3.61 | 6.37 | 0.84 | 0.75 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 6PXM | 20521 | 2021-01-07 | 2019-07-26 | 2.1 | 2.33 | 2.32 | 2.4 | 0.008 | 0.71 | 0.0 | 0.04 | 16.03 | 0.00 | 2.392 | 1.61 | 0.00 | 0.6 | 99.4 | 0.0 | -3.44 | 0.79 | 0.89 | 5.35 | 2.3 | 0.002 | 0.45 | 0.0 | 0.03 | 17.54 | 0.00 | 2.190 | 3.52 | 0.29 | 1.8 | 98.2 | 0.0 | 5.32 | 1.48 | 0.78 | 0.88 | 4.13 | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 5GAG | 8003 | 2021-01-06 | 2015-11-26 | 3.8 | 3.95 | — | 3.8 | 0.007 | 1.04 | 1.0 | 0.05 | 15.71 | 0.00 | 1.789 | 8.11 | 9.03 | 3.0 | 96.9 | 0.1 | -3.35 | 0.79 | 0.90 | 1.98 | 3.8 | 0.003 | 0.57 | 0.0 | 0.03 | 14.45 | 0.00 | 1.194 | 13.19 | 0.03 | 3.6 | 96.4 | 0.1 | -0.32 | 0.74 | 0.78 | 0.87 | 2.16 | 94030 | 3598 | 46 | 3049 | 473 | 0 | 0 | logfile |
✔ | 6DNC | 7970 | 2021-01-13 | 2018-06-06 | 3.7 | 6.35 | — | 4.1 | 0.008 | 1.14 | 2.0 | 0.09 | 13.50 | 0.01 | 1.764 | 6.76 | 1.11 | 13.5 | 84.5 | 2.0 | -4.52 | 0.87 | 0.73 | 0.26 | 4.1 | 0.004 | 0.63 | 0.0 | 0.03 | 15.63 | 0.01 | 1.957 | 28.16 | 0.00 | 9.3 | 90.6 | 0.1 | -1.26 | 2.49 | 0.96 | 0.90 | 0.41 | 152438 | 6520 | 59 | 4735 | 0 | 0 | 0 | logfile |
✔ | 6SE6 | 10152 | 2021-01-05 | 2019-07-29 | 3.5 | 4.16 | — | 3.9 | 0.010 | 1.00 | 0.0 | 0.06 | 28.15 | 0.01 | 2.247 | 3.86 | 0.00 | 1.2 | 98.8 | 0.0 | -3.83 | 0.88 | 0.85 | 1.92 | 3.9 | 0.003 | 0.59 | 0.0 | 0.03 | 27.73 | 0.00 | 2.091 | 10.75 | 0.00 | 1.1 | 98.9 | 0.0 | 1.79 | 0.92 | 0.86 | 0.83 | 1.45 | 12068 | 771 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 6RiU | 4898 | 2021-01-05 | 2019-04-25 | 3.9 | 6.21 | 2.04 | 7.0 | 0.008 | 1.19 | 0.0 | 0.09 | 15.19 | 0.01 | 2.182 | 5.20 | 0.00 | 8.4 | 91.6 | 0.0 | -5.77 | 0.59 | 0.69 | 0.56 | 7.1 | 0.002 | 0.66 | 0.0 | 0.03 | 13.20 | 0.00 | 1.969 | 13.17 | 0.00 | 4.5 | 95.5 | 0.0 | 0.20 | 1.65 | 0.59 | 0.72 | 1.07 | 2882 | 182 | 2 | 0 | 0 | 0 | 1430 | logfile |
✔ | 5NCo | 3617 | 2021-01-06 | 2017-03-06 | 4.8 | 5.02 | — | 4.8 | 0.007 | 1.08 | 0.0 | 0.05 | 15.62 | 0.00 | 1.168 | 8.50 | 9.43 | 3.1 | 96.8 | 0.1 | -2.95 | 0.70 | 0.76 | — | 4.8 | 0.004 | 0.65 | 0.0 | 0.03 | 15.38 | 0.01 | 1.206 | 25.57 | 0.06 | 5.0 | 94.9 | 0.1 | -0.41 | 1.35 | 0.71 | 0.83 | — | 101694 | 4738 | 43 | 3112 | 46 | 0 | 0 | logfile |
✔ | 6PWE | 20506 | 2021-01-05 | 2019-07-22 | 3.95 | 4.04 | — | 4.0 | 0.010 | 0.93 | 0.0 | 0.05 | 27.27 | 0.01 | 2.264 | 5.37 | 0.00 | 7.4 | 92.3 | 0.3 | -6.65 | 0.70 | 0.80 | 2.98 | 4.0 | 0.003 | 0.60 | 0.0 | 0.03 | 27.40 | 0.00 | 2.091 | 9.81 | 0.16 | 3.3 | 96.7 | 0.0 | -1.04 | 1.45 | 0.69 | 0.78 | 1.55 | 11923 | 744 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 5GAF | 8002 | 2021-01-06 | 2015-11-25 | 4.3 | 4.42 | — | 4.3 | 0.007 | 1.09 | 1.0 | 0.05 | 15.95 | 0.01 | 1.266 | 8.82 | 11.04 | 3.5 | 96.4 | 0.1 | -3.28 | 0.63 | 0.65 | — | 4.3 | 0.004 | 0.65 | 0.0 | 0.03 | 14.94 | 0.00 | 1.194 | 18.61 | 0.06 | 4.2 | 95.7 | 0.2 | -0.57 | 1.48 | 0.71 | 0.84 | — | 96182 | 3889 | 47 | 3049 | 452 | 0 | 0 | logfile |
✔ | 6MRW | 9214 | 2021-01-08 | 2018-10-15 | 4.3 | 4.76 | — | 4.3 | 0.006 | 0.98 | 0.0 | 0.04 | 10.35 | 0.01 | 2.080 | 4.39 | 0.41 | 2.1 | 97.9 | 0.0 | -0.19 | 0.82 | 0.84 | — | 4.3 | 0.002 | 0.50 | 0.0 | 0.03 | 11.89 | 0.01 | 2.129 | 6.78 | 0.00 | 1.9 | 98.1 | 0.0 | 6.47 | 1.34 | 0.82 | 0.83 | — | 31346 | 3990 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RJG | 4904 | 2021-01-05 | 2019-04-26 | 3.2 | 3.36 | — | 3.3 | 0.008 | 0.96 | 0.0 | 0.06 | 16.97 | 0.01 | 2.297 | 2.15 | 0.10 | 6.8 | 93.2 | 0.0 | -3.61 | 0.65 | 0.85 | 3.05 | 3.3 | 0.002 | 0.51 | 0.0 | 0.03 | 15.66 | 0.00 | 2.153 | 5.21 | 0.00 | 4.6 | 95.4 | 0.0 | 0.46 | 1.03 | 0.65 | 0.83 | 2.28 | 12220 | 1180 | 6 | 123 | 0 | 0 | 0 | logfile |
✔ | 5LZE | 4125 | 2021-01-12 | 2016-09-29 | 3.5 | 3.59 | 3.51 | 3.5 | 0.012 | 1.26 | 14.0 | 0.08 | 14.20 | 0.02 | 2.158 | 3.94 | 0.72 | 7.7 | 90.1 | 2.2 | -3.34 | 0.76 | 0.87 | 2.26 | 3.5 | 0.003 | 0.66 | 0.0 | 0.03 | 14.90 | 0.01 | 2.032 | 12.13 | 0.08 | 7.2 | 92.4 | 0.4 | -1.08 | 0.72 | 0.76 | 0.84 | 1.93 | 148018 | 5817 | 59 | 4782 | 2 | 0 | 0 | logfile |
✔ | 5LZA | 4121 | 2021-01-11 | 2016-09-29 | 3.6 | 3.69 | 3.73 | 3.6 | 0.008 | 1.17 | 17.0 | 0.07 | 14.14 | 0.02 | 2.102 | 4.01 | 0.47 | 7.8 | 90.1 | 2.1 | -3.44 | 0.74 | 0.86 | 1.62 | 3.6 | 0.003 | 0.68 | 0.0 | 0.03 | 15.02 | 0.01 | 2.003 | 14.05 | 0.04 | 8.2 | 91.5 | 0.3 | -1.30 | 0.73 | 0.74 | 0.83 | 1.74 | 146037 | 5817 | 57 | 4684 | 2 | 0 | 0 | logfile |
✔ | 6MRU | 9213 | 2021-01-08 | 2018-10-15 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 10.16 | 0.01 | 2.297 | 2.27 | 0.82 | 1.4 | 98.6 | 0.0 | -1.59 | 0.72 | 0.83 | 3.34 | 3.3 | 0.003 | 0.47 | 0.0 | 0.03 | 12.27 | 0.00 | 2.209 | 3.00 | 0.00 | 0.9 | 99.1 | 0.0 | 5.56 | 3.08 | 0.74 | 0.84 | 2.05 | 29107 | 3705 | 13 | 0 | 0 | 0 | 0 | logfile |