Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TKo	25976	2022-07-04	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.018	1.36	0.0	0.00	7.58	0.01	1.972	30.28	0.00	15.9	83.8	0.3	-2.17	0.89	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	7TKM	25974	2022-07-04	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.005	0.90	0.0	0.00	6.11	0.00	2.052	17.76	0.00	11.5	88.1	0.4	-1.22	1.55	0.83	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TJY	25946	2022-07-04	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.7	0.006	0.89	0.0	0.00	5.53	0.00	2.131	6.70	0.00	11.9	87.8	0.3	-0.26	1.48	0.84	0.80	—	20228	5056	27	0	0	0	0	logfile
✔	7N95	24250	2022-07-03	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.003	0.89	0.0	0.00	3.97	0.00	2.552	3.52	0.00	14.4	85.4	0.2	-2.79	1.72	0.84	0.81	—	7299	2433	2	0	0	0	0	logfile
✔	7TK8	25960	2022-07-04	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.61	—	4.4	0.008	1.17	0.0	0.00	6.80	0.01	1.933	31.40	0.00	11.8	87.8	0.4	-1.32	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TKP	25977	2022-07-04	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.83	0.0	0.00	5.46	0.00	2.080	13.25	0.00	10.0	89.8	0.2	0.34	0.82	0.82	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7JG6	22312	2022-07-04	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.003	0.91	0.0	0.00	5.94	0.00	2.230	1.09	0.00	10.6	89.3	0.1	-1.07	1.66	0.70	0.68	—	19320	4819	20	0	11	0	0	logfile
✔	7DZW	30915	2022-07-04	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.004	0.92	0.0	0.00	6.11	0.00	2.144	5.08	0.00	15.8	84.1	0.1	-2.69	2.06	0.77	0.73	—	13452	3363	3	0	0	0	0	logfile
✔	7DZY	30921	2022-07-04	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.85	0.0	0.00	5.31	0.00	2.074	2.81	0.00	11.3	88.5	0.2	-2.84	2.17	0.71	0.71	—	18708	4677	9	0	0	0	0	logfile
✔	7N9Q	24259	2022-07-03	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.01	0.0	0.00	5.01	0.00	2.577	6.97	0.00	13.1	86.1	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7TK0	25948	2022-07-04	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.004	0.83	0.0	0.00	5.40	0.00	2.153	9.44	0.00	10.9	88.8	0.3	-0.57	0.81	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	7TJZ	25947	2022-07-04	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.3	0.012	0.93	0.0	0.00	5.55	0.00	2.081	10.56	0.00	10.4	89.3	0.3	0.17	0.73	0.79	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TKG	25968	2022-07-04	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.2	0.005	0.95	0.0	0.00	6.53	0.00	2.099	18.88	0.00	13.4	86.4	0.2	-2.17	1.58	0.81	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	6oG3	20051	2022-07-02	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.006	1.22	0.0	0.00	8.59	0.00	2.605	57.07	0.00	14.1	85.9	0.0	-1.78	2.19	0.66	0.84	—	1215	396	4	0	9	0	0	logfile
✔	6TNG	10532	2022-07-03	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.02	0.0	0.00	7.42	0.01	2.133	21.25	0.00	25.4	74.3	0.3	-3.93	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	5VLZ	8709	2022-07-06	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.003	0.81	0.0	0.00	5.63	0.00	2.281	1.18	0.00	6.0	94.0	0.0	-1.57	1.65	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile
✔	7JG7	22313	2022-07-04	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.15	0.0	0.00	7.25	0.01	2.136	3.94	0.00	14.0	85.9	0.1	-2.12	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile
✔	6RRS	4989	2022-07-06	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.88	0.0	0.00	7.55	0.00	2.175	1.89	0.00	14.6	85.4	0.0	-1.44	2.05	0.80	0.71	—	93060	23220	180	0	0	0	0	logfile
✔	7TKQ	25978	2022-07-04	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.006	0.92	0.0	0.00	6.22	0.00	2.038	17.45	0.00	11.2	88.5	0.3	-0.53	0.80	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TKH	25969	2022-07-04	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.013	1.06	0.0	0.00	5.97	0.00	2.028	15.64	0.00	10.8	88.9	0.2	-0.13	1.65	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile

• Page 1 of 392
• next →