Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TKP	25977	2023-02-23	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.84	0.0	0.00	5.48	0.00	2.071	13.41	0.00	10.1	89.7	0.2	0.55	0.82	0.82	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7TKH	25969	2023-02-23	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.018	1.25	0.0	0.00	6.74	0.01	1.981	23.73	0.00	11.8	87.9	0.3	-1.30	1.66	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7TK8	25960	2023-02-23	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.61	—	4.4	0.007	1.08	0.0	0.00	6.62	0.01	1.965	25.50	0.00	11.6	88.1	0.3	-0.91	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TK0	25948	2023-02-23	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.005	0.87	0.0	0.00	5.56	0.00	2.077	11.02	0.00	11.1	88.7	0.3	-0.73	0.78	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	7TKQ	25978	2023-02-23	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.005	0.86	0.0	0.00	5.74	0.00	2.075	13.41	0.00	10.9	88.8	0.3	-0.16	1.53	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TKG	25968	2023-02-23	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.2	0.005	0.94	0.0	0.00	6.32	0.00	2.099	17.76	0.00	13.6	86.2	0.3	-1.81	1.60	0.80	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	6TNG	10532	2023-02-18	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.85	0.0	0.00	6.39	0.00	2.200	10.87	0.00	22.8	77.1	0.1	-3.08	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	6oG3	20051	2023-02-16	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.11	0.0	0.00	8.01	0.00	2.615	51.00	0.00	13.0	87.0	0.0	-1.64	2.16	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	7TJY	25946	2023-02-23	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.6	0.007	0.96	0.0	0.00	5.81	0.00	2.122	9.52	0.00	13.0	86.7	0.3	-0.71	1.49	0.83	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	7TJZ	25947	2023-02-23	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.2	0.012	0.91	0.0	0.00	5.70	0.00	2.102	9.44	0.00	8.8	90.9	0.3	-0.44	0.79	0.83	0.82	—	20228	5056	27	0	0	0	0	logfile
✔	7TKo	25976	2023-02-23	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.017	1.29	0.0	0.00	7.15	0.01	2.058	23.50	0.00	14.0	85.6	0.3	-1.39	0.90	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	7TKM	25974	2023-02-23	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.005	0.94	0.0	0.00	6.15	0.00	2.057	18.72	0.00	12.6	87.1	0.3	-1.03	1.54	0.83	0.82	—	20227	5056	27	0	0	0	0	logfile
✔	7JG6	22312	2023-02-23	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.91	0.0	0.00	5.77	0.00	2.225	1.33	0.00	12.8	87.2	0.0	-0.80	1.65	0.70	0.68	—	19320	4819	20	0	11	0	0	logfile
✔	7JG7	22313	2023-02-23	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.15	0.0	0.00	7.23	0.01	2.151	4.26	0.00	15.0	84.9	0.1	-1.98	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile
✔	7DZY	30921	2023-02-22	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.91	0.0	0.00	5.70	0.00	2.051	3.31	0.00	15.9	83.9	0.1	-2.90	2.20	0.70	0.69	—	18708	4677	9	0	0	0	0	logfile
✔	7DZW	30915	2023-02-21	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.003	0.81	0.0	0.00	4.68	0.00	2.178	3.51	0.00	11.9	88.0	0.1	-2.05	1.99	0.77	0.73	—	13452	3363	3	0	0	0	0	logfile
✔	7N9Q	24259	2023-02-18	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7N95	24250	2023-02-18	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✔	7N9Y	24264	2023-02-18	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.45	0.00	2.547	7.13	0.00	19.3	80.3	0.4	-4.00	2.62	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	6YW7	10960	2023-02-17	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.97	0.0	0.02	5.27	0.00	2.255	14.54	0.00	13.4	86.5	0.2	-3.04	5.44	0.81	0.74	—	5426	1788	9	0	2	0	0	logfile

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