Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JG7	22313	2021-05-04	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.19	0.0	0.00	7.16	0.01	2.147	2.85	0.00	15.2	84.7	0.1	-1.74	1.67	0.73	0.71	—	19316	4818	20	0	11	0	0	logfile
✔	7JG6	22312	2021-05-04	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.005	1.06	0.0	0.00	6.91	0.01	2.157	2.45	0.00	13.7	86.2	0.1	-1.84	1.69	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	6TNG	10532	2021-05-03	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	10.00	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.03	0.0	0.00	7.60	0.01	2.127	17.88	0.00	25.5	74.4	0.1	-4.07	0.39	0.76	0.73	—	8240	2060	2	0	0	0	0	logfile
✔	6oG3	20051	2021-05-03	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.002	0.66	0.0	0.00	4.56	0.00	2.650	3.04	0.00	4.9	95.1	0.0	0.48	2.10	0.67	0.85	—	1215	396	4	0	9	0	0	logfile
✔	6RRS	4989	2021-05-05	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.003	0.71	0.0	0.00	5.51	0.00	2.264	1.84	0.00	10.9	89.1	0.0	-0.49	1.78	0.72	0.75	—	93060	23220	180	0	0	0	0	logfile
✔	5VLZ	8709	2021-05-05	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.67	—	4.4	0.007	1.17	0.0	0.00	8.24	0.01	2.032	7.27	0.00	15.6	84.4	0.0	-2.81	1.73	0.84	0.79	—	96897	24179	181	0	0	0	0	logfile
✔	6YW7	10960	2021-05-03	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	1.63	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.99	0.0	0.01	5.30	0.00	2.336	9.92	0.00	16.8	83.0	0.2	-3.04	6.98	0.80	0.74	—	5426	1788	9	0	2	0	0	logfile
✔	6XMF	22257	2021-05-03	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.52	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.83	0.00	2.151	14.89	0.20	10.4	89.6	0.0	-0.68	1.15	0.70	0.75	2.98	7382	627	3	109	1	0	0	logfile
✔	6VWN	21422	2021-05-04	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.11	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.003	0.62	0.0	0.03	16.42	0.00	1.915	16.14	0.55	6.4	93.6	0.0	-1.39	1.29	0.84	0.85	1.08	140036	5341	57	4580	55	0	0	logfile
✔	7AT8	11910	2021-05-04	2020-10-29	4.4	4.59	—	4.4	0.004	0.63	0.0	0.04	24.70	0.00	1.763	8.55	0.40	2.3	97.4	0.3	-1.00	0.84	0.77	—	4.4	0.003	0.63	0.0	0.03	26.22	0.00	2.110	13.86	0.00	4.2	95.7	0.1	0.67	1.09	0.86	0.82	—	15951	1186	13	312	20	0	0	logfile
✔	6PCT	20307	2021-05-04	2019-06-18	2.8	3.01	—	2.9	0.015	0.62	2.0	0.03	12.90	0.02	1.891	2.94	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.004	0.68	0.0	0.03	14.20	0.01	1.984	8.43	2.76	5.7	94.1	0.2	-1.72	0.31	0.67	0.88	4.45	72198	964	8	3015	1	0	0	logfile
✔	6PC6	20297	2021-05-03	2019-06-16	2.5	3.08	—	2.9	0.008	0.52	0.0	0.03	12.79	0.02	1.930	2.89	2.11	6.4	93.5	0.1	-3.59	0.73	0.88	4.50	2.9	0.004	0.62	0.0	0.03	14.67	0.01	1.954	8.04	3.29	6.2	93.7	0.1	-0.70	0.91	0.73	0.89	4.39	72127	963	8	3015	1	0	0	logfile
✔	6VWM	21421	2021-05-04	2020-02-20	3.4	3.74	—	3.2	0.003	0.59	0.0	0.03	14.75	0.00	1.963	7.00	1.73	5.0	95.0	0.0	-3.11	0.82	0.83	1.68	3.2	0.003	0.60	0.0	0.03	16.38	0.00	1.949	14.99	0.58	6.2	93.8	0.0	-1.35	2.11	0.83	0.84	1.48	140044	5342	57	4580	53	0	0	logfile
✔	6VWL	21420	2021-05-04	2020-02-20	3.1	3.37	—	3.0	0.005	0.62	0.0	0.04	13.89	0.00	1.922	7.25	1.40	4.2	95.7	0.0	-2.42	0.82	0.85	2.58	3.0	0.004	0.59	0.0	0.03	15.48	0.00	1.924	13.52	0.34	5.6	94.4	0.0	-0.70	0.60	0.83	0.86	2.07	140603	5383	58	4593	34	0	0	logfile
✔	6o8Z	0659	2021-05-03	2019-03-12	3.49	3.99	—	3.6	0.010	0.88	0.0	0.05	16.68	0.01	1.940	16.93	15.40	18.5	81.1	0.3	-5.38	0.87	0.86	1.21	3.6	0.004	0.64	0.0	0.03	15.76	0.01	2.029	12.01	0.50	11.1	88.8	0.1	-2.47	1.23	0.87	0.85	1.10	138498	5235	53	4542	4	0	0	logfile
✔	6XZC	10658	2021-05-04	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.10	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.002	0.52	0.0	0.03	15.40	0.00	2.218	4.81	0.07	0.8	99.2	0.0	5.23	1.08	0.72	0.84	0.73	13279	1694	7	0	0	0	0	logfile
✔	6PC8	20299	2021-05-04	2019-06-16	2.9	3.26	—	3.1	0.006	0.54	0.0	0.03	12.71	0.02	1.931	3.23	2.62	7.2	92.7	0.1	-4.11	0.71	0.86	3.45	3.1	0.005	0.65	0.0	0.03	14.80	0.01	2.109	8.82	3.93	8.3	91.6	0.1	-1.76	1.25	0.72	0.88	3.25	72169	967	8	3015	1	0	0	logfile
✔	6L3V	0827	2021-05-04	2019-10-15	2.63	2.90	2.72	2.9	0.010	0.92	0.0	0.04	16.68	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.003	0.61	0.0	0.03	16.29	0.00	2.184	2.81	1.62	0.5	99.5	0.0	2.29	3.59	0.59	0.86	2.74	19416	1206	12	0	6	0	9528	logfile
✔	6RJU	4906	2021-05-03	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.67	0.0	0.03	16.11	0.00	2.231	7.54	0.00	7.8	92.2	0.0	-1.37	1.76	0.29	0.09	-2.78	1992	131	1	0	0	0	997	logfile
✔	6WDF	21634	2021-05-05	2020-03-31	3.3	3.73	3.77	3.6	0.006	0.94	0.0	0.08	13.51	0.01	1.310	11.71	0.94	11.6	86.6	1.8	-4.80	0.81	0.82	1.42	3.6	0.003	0.66	0.0	0.03	16.07	0.01	2.010	17.79	0.73	8.8	91.1	0.1	-2.19	1.56	0.81	0.83	0.97	148582	6025	59	4733	0	0	0	logfile

• Page 1 of 244
• next →