Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TNG	10532	2021-08-07	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	10.00	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.01	0.0	0.00	7.45	0.01	2.147	16.73	0.00	25.4	74.4	0.1	-3.94	0.38	0.76	0.73	—	8240	2060	2	0	0	0	0	logfile
✔	5VLZ	8709	2021-08-12	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.67	—	4.4	0.003	0.85	0.0	0.00	5.98	0.00	2.193	1.98	0.00	8.6	91.4	0.0	-1.66	1.69	0.83	0.79	—	96897	24179	181	0	0	0	0	logfile
✔	6RRS	4989	2021-08-12	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.7	0.004	0.79	0.0	0.00	6.65	0.00	2.206	1.98	0.00	12.9	87.1	0.0	-0.96	1.80	0.79	0.69	—	93060	23220	180	0	0	0	0	logfile
✔	7DZW	30915	2021-08-08	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	1.99	0.00	5.1	93.3	1.6	-1.27	0.44	0.26	—	3.3	0.003	0.78	0.0	0.00	4.55	0.00	2.226	2.34	0.00	11.4	88.5	0.1	-1.82	2.18	0.76	0.74	—	13452	3363	3	0	0	0	0	logfile
✔	7JG6	22312	2021-08-09	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.006	1.24	0.0	0.00	8.12	0.01	2.045	5.19	0.00	17.8	82.0	0.2	-2.84	2.47	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	7JG7	22313	2021-08-09	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.005	1.12	0.0	0.00	6.75	0.01	2.234	2.17	0.00	14.8	85.1	0.1	-1.45	1.66	0.73	0.71	—	19316	4818	20	0	11	0	0	logfile
✔	6oG3	20051	2021-08-07	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.004	0.91	0.0	0.00	7.17	0.00	2.622	30.38	0.00	6.5	93.5	0.0	-0.51	2.18	0.67	0.85	—	1215	396	4	0	9	0	0	logfile
✔	7DZY	30921	2021-08-08	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	2.73	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.92	0.0	0.00	5.76	0.00	2.163	3.65	0.00	14.0	85.9	0.1	-3.26	2.39	0.70	0.73	—	18708	4677	9	0	0	0	0	logfile
✔	6YW7	10960	2021-08-07	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	1.63	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.002	0.93	0.0	0.01	4.53	0.00	2.511	1.09	0.00	6.4	93.5	0.1	-3.67	6.36	0.85	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	6MHo	9115	2021-08-10	2018-09-18	3.4	3.50	3.41	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.84	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.4	0.003	0.53	0.0	0.03	13.01	0.00	1.990	6.57	0.00	4.5	95.5	0.0	1.40	2.10	0.68	0.80	3.49	32224	2404	4	0	0	0	15184	logfile
✔	6T17	10362	2021-08-11	2019-10-03	2.8	3.51	—	3.1	0.005	0.90	0.0	0.13	14.94	0.00	2.166	3.24	0.00	2.2	97.8	0.0	1.11	0.69	0.76	2.05	3.1	0.005	0.59	0.0	0.03	16.89	0.00	1.943	8.20	2.29	2.7	97.3	0.0	3.54	0.89	0.71	0.85	2.14	181940	12144	44	0	0	0	91432	logfile
✔	6E9E	9013	2021-08-07	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	10.72	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.5	0.002	0.53	0.0	0.03	13.94	0.00	2.255	5.77	0.00	1.6	98.4	0.0	0.84	1.13	0.78	0.88	3.33	8163	863	3	51	1	0	0	logfile
✔	6VAK	21141	2021-08-09	2019-12-17	3.48	3.85	—	3.8	0.004	0.77	0.0	0.04	14.36	0.00	2.047	7.08	2.96	8.2	91.8	0.0	-2.80	0.73	0.80	3.28	3.8	0.002	0.59	0.0	0.03	16.56	0.00	2.170	5.92	0.36	5.7	94.2	0.0	2.54	0.59	0.72	0.83	2.68	22781	2992	11	0	0	0	0	logfile
✔	6NY3	8980	2021-08-08	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	19.98	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.84	0.76	0.84	1.41	4.0	0.003	0.64	0.0	0.03	19.85	0.00	2.137	10.07	0.49	14.7	85.2	0.1	-1.73	1.02	0.70	0.80	0.74	10214	794	4	164	121	0	0	logfile
✔	6oT2	20192	2021-08-10	2019-05-02	4.1	4.25	4.02	4.1	0.009	0.87	0.0	0.05	8.41	0.01	2.066	5.94	0.00	7.3	92.7	0.0	-2.26	0.71	0.76	—	4.1	0.004	0.57	0.0	0.03	10.81	0.00	2.032	8.81	0.00	8.2	91.8	0.0	0.94	1.73	0.71	0.76	—	32311	2444	4	0	56	0	14975	logfile
✔	6o1D	0586	2021-08-08	2019-02-19	3.395	3.57	—	3.5	0.010	0.95	1.0	0.05	28.08	0.01	2.317	2.17	0.00	3.4	96.6	0.0	-4.72	0.79	0.87	4.13	3.5	0.003	0.57	0.0	0.03	27.92	0.00	2.219	7.40	0.16	2.1	97.9	0.0	0.63	0.54	0.80	0.88	2.70	11982	761	10	290	0	0	0	logfile
✔	6oST	20188	2021-08-14	2019-05-02	4.2	5.81	—	3.3	0.009	0.98	3.0	0.05	16.50	0.02	1.577	18.83	0.37	6.9	93.0	0.1	-3.80	0.92	0.87	—	3.3	0.004	0.66	0.0	0.03	16.10	0.01	1.921	34.41	0.02	6.2	93.8	0.0	-0.95	1.80	0.91	0.87	—	146620	5996	61	4642	13	0	0	logfile
✔	6PX1	20516	2021-08-08	2019-07-24	3.3	3.48	—	3.4	0.006	0.87	0.0	0.05	28.73	0.01	2.228	2.28	0.00	1.9	98.1	0.0	-2.98	0.79	0.83	3.70	3.4	0.004	0.57	0.0	0.03	28.72	0.00	2.105	8.83	0.16	1.9	98.1	0.0	2.43	0.45	0.80	0.84	2.45	11937	752	10	290	0	0	0	logfile
✔	6SXo	10344	2021-08-08	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.002	0.58	0.0	0.03	16.68	0.00	2.130	10.38	0.70	3.6	96.4	0.0	-1.04	0.76	0.27	0.77	2.05	14894	973	8	326	0	0	0	logfile
✔	6DZi	8932	2021-08-16	2018-07-05	3.46	3.52	—	3.5	0.011	1.05	21.0	0.07	15.81	0.01	1.028	6.95	0.62	9.7	89.5	0.8	-4.46	0.78	0.79	2.41	3.5	0.005	0.65	2.0	0.03	16.04	0.01	2.004	11.46	0.37	6.2	93.8	0.0	-1.15	1.24	0.82	0.83	1.62	150868	6283	56	4748	0	0	0	logfile

• Page 1 of 276
• next →