Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5VLZ	8709	2021-01-06	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.67	—	4.4	0.003	0.76	0.0	0.00	4.99	0.00	2.275	1.13	0.00	5.1	94.9	0.0	-0.94	2.07	0.81	0.77	—	96897	24179	181	0	0	0	0	logfile
✔	6TNG	10532	2021-01-05	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	10.00	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.03	0.0	0.00	7.60	0.01	2.127	17.88	0.00	25.5	74.4	0.1	-4.07	0.39	0.74	0.71	—	8240	2060	2	0	0	0	0	logfile
✔	7JG6	22312	2021-01-06	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.007	1.25	0.0	0.00	8.05	0.01	2.038	4.78	0.00	17.0	82.8	0.1	-2.60	1.70	0.72	0.70	—	19320	4819	20	0	11	0	0	logfile
✔	7JG7	22313	2021-01-06	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.007	1.25	0.0	0.00	7.52	0.01	2.117	3.42	0.00	16.0	83.8	0.2	-2.10	1.67	0.73	0.71	—	19316	4818	20	0	11	0	0	logfile
✔	6RRS	4989	2021-01-06	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.80	0.0	0.00	6.71	0.00	2.212	1.98	0.00	13.7	86.3	0.0	-0.97	1.80	0.69	0.74	—	93060	23220	180	0	0	0	0	logfile
✔	6oG3	20051	2021-01-05	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.004	0.98	0.0	0.00	7.40	0.00	2.621	32.79	0.00	9.1	90.9	0.0	-1.22	2.26	0.68	0.87	—	1215	396	4	0	9	0	0	logfile
✔	6YW7	10960	2021-01-05	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	1.63	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.02	0.0	0.01	5.24	0.00	2.300	9.92	0.00	12.3	87.6	0.1	-3.61	6.37	0.84	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	6PXM	20521	2021-01-07	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.61	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.45	0.0	0.03	17.54	0.00	2.190	3.52	0.29	1.8	98.2	0.0	5.32	1.48	0.78	0.88	4.13	32736	4080	24	0	0	0	0	logfile
✔	5GAG	8003	2021-01-06	2015-11-26	3.8	3.95	—	3.8	0.007	1.04	1.0	0.05	15.71	0.00	1.789	8.11	9.03	3.0	96.9	0.1	-3.35	0.79	0.90	1.98	3.8	0.003	0.57	0.0	0.03	14.45	0.00	1.194	13.19	0.03	3.6	96.4	0.1	-0.32	0.74	0.78	0.87	2.16	94030	3598	46	3049	473	0	0	logfile
✔	6DNC	7970	2021-01-13	2018-06-06	3.7	6.35	—	4.1	0.008	1.14	2.0	0.09	13.50	0.01	1.764	6.76	1.11	13.5	84.5	2.0	-4.52	0.87	0.73	0.26	4.1	0.004	0.63	0.0	0.03	15.63	0.01	1.957	28.16	0.00	9.3	90.6	0.1	-1.26	2.49	0.96	0.90	0.41	152438	6520	59	4735	0	0	0	logfile
✔	6SE6	10152	2021-01-05	2019-07-29	3.5	4.16	—	3.9	0.010	1.00	0.0	0.06	28.15	0.01	2.247	3.86	0.00	1.2	98.8	0.0	-3.83	0.88	0.85	1.92	3.9	0.003	0.59	0.0	0.03	27.73	0.00	2.091	10.75	0.00	1.1	98.9	0.0	1.79	0.92	0.86	0.83	1.45	12068	771	11	290	0	0	0	logfile
✔	6RiU	4898	2021-01-05	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.66	0.0	0.03	13.20	0.00	1.969	13.17	0.00	4.5	95.5	0.0	0.20	1.65	0.59	0.72	1.07	2882	182	2	0	0	0	1430	logfile
✔	5NCo	3617	2021-01-06	2017-03-06	4.8	5.02	—	4.8	0.007	1.08	0.0	0.05	15.62	0.00	1.168	8.50	9.43	3.1	96.8	0.1	-2.95	0.70	0.76	—	4.8	0.004	0.65	0.0	0.03	15.38	0.01	1.206	25.57	0.06	5.0	94.9	0.1	-0.41	1.35	0.71	0.83	—	101694	4738	43	3112	46	0	0	logfile
✔	6PWE	20506	2021-01-05	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.27	0.01	2.264	5.37	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.003	0.60	0.0	0.03	27.40	0.00	2.091	9.81	0.16	3.3	96.7	0.0	-1.04	1.45	0.69	0.78	1.55	11923	744	10	294	0	0	0	logfile
✔	5GAF	8002	2021-01-06	2015-11-25	4.3	4.42	—	4.3	0.007	1.09	1.0	0.05	15.95	0.01	1.266	8.82	11.04	3.5	96.4	0.1	-3.28	0.63	0.65	—	4.3	0.004	0.65	0.0	0.03	14.94	0.00	1.194	18.61	0.06	4.2	95.7	0.2	-0.57	1.48	0.71	0.84	—	96182	3889	47	3049	452	0	0	logfile
✔	6MRW	9214	2021-01-08	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.39	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.50	0.0	0.03	11.89	0.01	2.129	6.78	0.00	1.9	98.1	0.0	6.47	1.34	0.82	0.83	—	31346	3990	14	0	0	0	0	logfile
✔	6RJG	4904	2021-01-05	2019-04-26	3.2	3.36	—	3.3	0.008	0.96	0.0	0.06	16.97	0.01	2.297	2.15	0.10	6.8	93.2	0.0	-3.61	0.65	0.85	3.05	3.3	0.002	0.51	0.0	0.03	15.66	0.00	2.153	5.21	0.00	4.6	95.4	0.0	0.46	1.03	0.65	0.83	2.28	12220	1180	6	123	0	0	0	logfile
✔	5LZE	4125	2021-01-12	2016-09-29	3.5	3.59	3.51	3.5	0.012	1.26	14.0	0.08	14.20	0.02	2.158	3.94	0.72	7.7	90.1	2.2	-3.34	0.76	0.87	2.26	3.5	0.003	0.66	0.0	0.03	14.90	0.01	2.032	12.13	0.08	7.2	92.4	0.4	-1.08	0.72	0.76	0.84	1.93	148018	5817	59	4782	2	0	0	logfile
✔	5LZA	4121	2021-01-11	2016-09-29	3.6	3.69	3.73	3.6	0.008	1.17	17.0	0.07	14.14	0.02	2.102	4.01	0.47	7.8	90.1	2.1	-3.44	0.74	0.86	1.62	3.6	0.003	0.68	0.0	0.03	15.02	0.01	2.003	14.05	0.04	8.2	91.5	0.3	-1.30	0.73	0.74	0.83	1.74	146037	5817	57	4684	2	0	0	logfile
✔	6MRU	9213	2021-01-08	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.47	0.0	0.03	12.27	0.00	2.209	3.00	0.00	0.9	99.1	0.0	5.56	3.08	0.74	0.84	2.05	29107	3705	13	0	0	0	0	logfile

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