Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E33	27855	2023-08-13	2022-08-16	2.23	2.91	2.58	2.7	0.006	0.50	0.0	0.04	12.84	0.02	1.965	2.00	0.53	4.6	95.4	0.0	0.48	0.70	0.90	5.42	2.7	0.004	0.58	0.0	0.03	13.61	0.01	1.956	3.48	1.17	6.0	94.0	0.0	0.12	0.21	0.69	0.89	5.42	115769	1179	11	3015	1	1	41830	logfile
✔	8FKT	29256	2023-08-20	2022-12-21	2.81	2.81	2.95	2.9	0.004	0.59	0.0	0.04	13.12	0.00	1.945	1.91	0.02	1.3	98.7	0.0	1.55	0.74	0.81	3.63	2.9	0.003	0.51	0.0	0.03	14.22	0.00	1.963	5.57	1.34	1.8	98.2	0.0	1.73	0.41	0.76	0.86	3.14	134945	10797	65	2347	69	0	0	logfile
✔	7U0G	26258	2023-08-15	2022-02-18	2.6	3.10	—	2.9	0.006	0.78	2.0	0.04	25.66	0.00	2.154	14.81	0.87	3.8	96.1	0.1	0.26	0.84	0.87	2.78	2.9	0.004	0.53	0.0	0.03	26.22	0.00	1.948	23.88	2.14	4.7	95.3	0.0	2.10	1.13	0.82	0.86	2.66	18571	1510	15	266	0	0	1244	logfile
✔	8F53	28859	2023-08-27	2022-11-11	2.93	3.13	2.94	3.1	0.002	0.43	0.0	0.03	11.82	0.00	2.361	1.10	0.00	0.6	99.4	0.0	1.20	0.69	0.77	2.64	3.1	0.004	0.52	0.0	0.03	16.73	0.00	2.207	5.29	4.09	0.3	99.7	0.0	2.97	1.13	0.61	0.81	2.46	51060	3240	60	0	0	0	26460	logfile
✔	7U0J	26261	2023-08-14	2022-02-18	2.7	3.24	—	3.1	0.008	0.93	3.0	0.05	27.09	0.01	2.088	6.00	0.39	4.6	95.3	0.1	-0.97	0.80	0.82	3.63	3.1	0.003	0.59	0.0	0.03	27.70	0.00	2.195	8.37	2.15	4.3	95.7	0.0	1.50	0.35	0.76	0.78	3.65	15622	1210	12	298	0	0	0	logfile
✔	7Y6P	33645	2023-08-21	2022-06-21	3.3	3.20	3.21	3.3	0.005	0.66	0.0	0.04	15.54	0.00	1.892	8.44	0.00	2.3	97.7	0.0	3.78	0.77	0.89	3.18	3.3	0.005	0.69	0.0	0.03	16.67	0.00	2.091	3.58	0.36	2.0	98.0	0.0	4.44	0.20	0.76	0.90	2.29	31428	3772	48	0	60	0	0	logfile
✔	3J89	6123	2023-08-11	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.49	0.0	0.03	20.68	0.00	2.114	8.31	1.00	0.6	99.4	0.0	3.03	1.98	0.81	0.79	0.31	9025	551	19	0	0	0	4598	logfile
✔	6XMF	22257	2023-08-10	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.60	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.60	0.0	0.03	17.60	0.00	2.155	15.19	0.40	9.1	90.9	0.0	-0.44	0.47	0.70	0.76	2.47	7382	627	3	109	1	0	0	logfile
✔	8DFU	27414	2023-08-17	2022-06-22	3.44	3.84	3.52	3.8	0.010	0.92	0.0	1.18	24.51	0.00	2.461	3.48	0.00	1.2	98.8	0.0	1.08	0.59	0.85	1.18	3.8	0.003	0.53	0.0	0.03	20.00	0.00	2.271	5.44	0.35	2.4	97.6	0.0	4.52	1.18	0.58	0.84	0.37	22710	2520	56	0	60	0	0	logfile
✔	6XL0	22231	2023-08-24	2020-06-27	3.4	3.44	3.37	3.5	0.008	0.81	0.0	0.05	12.66	0.00	2.137	9.20	0.00	3.0	97.0	0.0	0.73	0.50	0.80	1.02	3.4	0.004	0.60	0.0	0.03	15.84	0.00	2.122	7.34	0.40	2.7	97.3	0.0	3.21	1.15	0.51	0.84	1.25	38820	5420	20	0	0	0	0	logfile
✔	6E9Z	9021	2023-08-22	2018-08-01	3.4	3.50	—	3.4	0.011	0.85	0.0	0.05	10.27	0.01	1.132	13.25	0.00	4.5	95.1	0.4	-6.29	0.55	0.77	3.60	3.5	0.003	0.62	0.0	0.03	15.68	0.00	1.947	8.04	0.12	2.5	97.5	0.0	2.56	1.91	0.57	0.82	1.30	32652	2025	9	0	0	0	16830	logfile
✔	6E9Y	9020	2023-08-09	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.005	0.58	0.0	0.03	11.10	0.00	2.001	10.39	0.00	1.7	98.3	0.0	1.61	1.51	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	7RX5	24725	2023-08-11	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.003	0.35	0.0	0.03	13.46	0.00	2.257	6.36	0.00	0.0	100.0	0.0	5.01	0.27	0.71	0.88	2.75	9120	1160	40	0	0	0	0	logfile
✔	7ABK	11698	2023-08-09	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.004	0.67	0.0	0.03	19.79	0.00	2.278	6.30	2.47	2.1	97.9	0.0	4.42	1.32	0.28	0.86	1.35	1574	196	1	0	0	0	0	logfile
✔	6WKT	21708	2023-08-09	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.57	0.0	0.03	16.11	0.00	2.212	10.95	0.00	4.8	95.2	0.0	3.85	1.35	0.64	0.76	3.76	3152	424	4	0	0	0	0	logfile
✔	7X57	33010	2023-08-11	2022-03-04	3.63	3.95	—	3.8	0.003	0.63	0.0	0.03	28.98	0.01	2.286	9.90	0.20	1.4	98.6	0.0	0.39	0.82	0.76	1.31	3.8	0.003	0.64	0.0	0.03	29.85	0.00	2.269	13.03	0.99	2.6	97.4	0.0	2.84	0.69	0.83	0.79	1.19	9767	595	10	242	0	0	0	logfile
✔	7WLR	32591	2023-08-12	2022-01-13	3.54	3.36	—	3.5	0.006	0.88	0.0	0.05	29.42	0.01	2.232	3.15	0.00	1.8	98.2	0.0	1.65	0.69	0.75	2.27	3.5	0.004	0.56	0.0	0.03	28.58	0.00	2.194	6.62	0.16	2.4	97.6	0.0	2.98	1.22	0.78	0.83	2.36	11922	754	10	290	0	0	0	logfile
✔	8F4X	28858	2023-08-22	2022-11-11	3.01	3.72	3.03	3.4	0.004	0.55	0.0	0.03	15.82	0.00	2.226	5.99	0.00	0.6	99.4	0.0	0.06	0.84	0.83	1.71	3.4	0.002	0.42	0.0	0.03	17.34	0.00	2.299	5.10	0.12	0.1	99.9	0.0	5.43	0.45	0.84	0.85	0.51	32760	4020	60	0	0	0	0	logfile
✔	8DP5	27630	2023-08-15	2022-07-14	3.1	3.61	3.19	3.5	0.013	1.78	2.0	0.09	12.28	0.02	2.317	0.79	0.00	1.1	98.9	0.0	-0.51	0.80	0.85	4.09	3.5	0.002	0.52	0.0	0.03	14.32	0.00	2.080	2.98	0.11	1.3	98.7	0.0	2.69	2.87	0.74	0.82	2.70	17772	1145	6	0	0	0	8908	logfile
✔	7U0i	26260	2023-08-15	2022-02-18	2.6	3.16	—	3.0	0.012	0.86	10.0	0.05	26.95	0.01	2.074	14.30	1.56	3.9	96.0	0.1	0.00	0.85	0.87	3.19	2.9	0.003	0.53	0.0	0.03	27.53	0.00	2.064	23.04	2.59	4.4	95.6	0.0	1.64	0.32	0.81	0.85	3.26	18108	1368	14	298	0	0	1220	logfile

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