Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NAT	12247	2022-04-09	2021-01-25	3.59	4.72	3.68	2.6	0.009	0.84	6.0	0.05	15.98	0.02	0.616	27.68	0.00	7.4	92.6	0.0	-3.28	0.90	0.81	0.72	2.5	0.006	0.82	2.0	0.03	16.41	0.01	1.528	27.76	0.19	4.1	95.9	0.0	-1.00	0.72	0.92	0.87	0.59	50921	2562	25	1430	66	0	0	logfile
✔	7S4V	24835	2022-04-05	2021-09-09	3.28	3.87	—	3.7	0.003	0.54	0.0	0.04	17.44	0.00	2.202	4.88	0.00	5.0	95.0	0.0	-1.46	0.80	0.80	2.24	3.7	0.002	0.52	0.0	0.03	18.46	0.00	2.235	5.23	0.00	4.4	95.6	0.0	-0.38	0.56	0.85	0.85	2.01	12215	1122	4	145	0	0	0	logfile
✔	3J89	6123	2022-04-04	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.56	0.0	0.03	20.77	0.01	2.082	10.42	2.01	1.4	98.6	0.0	2.48	1.98	0.81	0.79	0.26	9025	551	19	0	0	0	4598	logfile
✔	6R23	4708	2022-04-04	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.59	0.0	0.03	16.52	0.00	2.361	7.85	0.00	6.7	93.3	0.0	0.29	3.60	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✔	7WAY	32389	2022-04-05	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	16.63	0.00	2.172	5.59	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.002	0.56	0.0	0.03	17.57	0.00	2.210	6.01	0.72	2.1	97.9	0.0	1.76	0.33	0.88	0.86	2.28	11453	960	4	175	0	0	0	logfile
✔	6MUP	9251	2022-04-05	2018-10-23	3.5	3.90	—	3.8	0.013	1.19	1.0	0.06	25.79	0.01	1.379	7.59	1.08	10.3	89.2	0.5	-6.36	0.61	0.61	2.67	3.8	0.003	0.68	0.0	0.03	26.66	0.00	2.120	11.50	0.20	7.9	92.1	0.0	-1.78	0.79	0.73	0.78	1.02	15803	1224	14	294	0	0	0	logfile
✔	7LJ3	23388	2022-04-07	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.010	0.89	0.0	0.03	19.65	0.01	1.899	9.09	4.21	5.0	94.9	0.2	2.05	1.40	0.22	0.78	1.86	25714	2564	12	225	0	0	0	logfile
✔	6MHX	9121	2022-04-08	2018-09-18	4.0	4.20	3.97	4.1	0.004	0.67	0.0	0.04	7.56	0.00	2.077	6.96	0.30	3.1	96.9	0.0	-2.52	0.77	0.76	—	4.0	0.003	0.54	0.0	0.03	12.08	0.00	1.951	10.47	0.00	5.2	94.8	0.0	2.22	0.98	0.78	0.78	—	31612	2436	4	0	0	0	14648	logfile
✔	5XYM	6789	2022-04-07	2017-07-09	3.08	3.42	—	3.4	0.006	1.01	7.0	0.10	16.02	0.00	1.297	4.08	2.56	7.8	89.6	2.5	-3.59	0.66	0.78	3.19	3.4	0.004	0.64	1.0	0.03	15.42	0.01	1.114	8.13	0.12	7.8	91.2	1.1	-1.59	1.41	0.77	0.85	2.41	84069	3122	32	2781	146	0	0	logfile
✔	6E9Z	9021	2022-04-08	2018-08-01	3.4	3.50	—	3.4	0.011	0.85	0.0	0.05	10.27	0.01	1.132	13.25	0.00	4.5	95.1	0.4	-6.29	0.55	0.77	3.60	3.5	0.003	0.62	0.0	0.03	15.82	0.00	1.876	8.16	0.12	2.7	97.3	0.0	2.47	1.91	0.57	0.81	1.19	32652	2025	9	0	0	0	16830	logfile
✔	7oHT	12908	2022-04-08	2021-05-11	4.7	6.83	4.99	3.5	0.002	0.48	0.0	0.04	17.51	0.00	1.855	6.82	1.28	5.3	94.6	0.1	0.83	0.81	0.61	—	3.3	0.003	0.58	0.0	0.03	17.81	0.00	1.807	19.44	0.00	8.9	90.9	0.1	-0.79	1.73	0.86	0.78	—	135365	5154	30	1618	3	0	59714	logfile
✔	6MEC	9106	2022-04-06	2018-09-06	3.6	3.69	—	3.6	0.010	1.21	0.0	0.06	18.24	0.01	1.659	15.42	0.00	13.7	86.3	0.0	-4.93	0.86	0.80	2.53	3.6	0.007	0.87	0.0	0.03	17.73	0.00	1.934	16.02	0.00	8.6	91.4	0.0	-1.43	0.93	0.86	0.79	1.82	21276	414	5	832	52	0	0	logfile
✔	6SEG	10155	2022-04-05	2019-07-30	3.1	3.19	—	3.2	0.006	0.86	0.0	0.05	27.88	0.01	2.283	3.10	0.00	1.3	98.7	0.0	-3.47	0.66	0.79	3.38	3.2	0.004	0.60	0.0	0.03	29.04	0.00	2.004	8.06	0.17	1.5	98.5	0.0	1.18	0.37	0.67	0.81	2.48	11689	728	10	290	0	0	0	logfile
✔	6G4S	4348	2022-04-09	2018-03-28	4.0	4.37	—	3.9	0.005	1.05	0.0	0.07	21.38	0.01	1.911	1.77	0.00	8.6	91.2	0.2	-3.72	0.72	0.69	—	3.9	0.004	0.71	0.0	0.03	21.09	0.00	2.009	7.98	0.00	11.6	88.4	0.0	-0.68	2.10	0.81	0.73	—	48967	5224	33	1613	768	0	0	logfile
✔	7N3P	24143	2022-04-04	2021-06-01	3.65	3.97	—	3.9	0.003	0.58	0.0	0.04	18.98	0.00	2.224	8.05	0.00	2.2	97.8	0.0	1.68	0.77	0.79	2.64	3.9	0.004	0.60	0.0	0.03	19.71	0.01	2.136	14.35	0.27	2.2	97.8	0.0	1.41	0.44	0.78	0.82	2.54	9055	454	4	259	0	0	0	logfile
✔	7AC7	11713	2022-04-16	2020-09-10	3.08	3.25	3.06	3.1	0.003	0.58	5.0	0.03	14.38	0.02	1.183	10.07	0.66	3.1	96.7	0.2	-0.42	0.80	0.83	2.85	3.1	0.004	0.62	0.0	0.03	15.67	0.01	1.041	8.56	0.51	3.8	96.1	0.1	-0.05	0.58	0.84	0.89	2.58	154883	5975	71	5017	443	0	0	logfile
✔	7ACR	11718	2022-04-14	2020-09-11	3.44	3.72	3.11	2.6	0.003	0.69	21.0	0.04	15.48	0.02	0.444	14.05	1.77	5.3	94.3	0.4	-1.02	0.87	0.78	1.12	2.6	0.005	0.71	0.0	0.03	16.76	0.01	1.197	17.92	0.58	7.3	92.6	0.1	-1.40	1.23	0.89	0.84	1.26	151668	5858	66	4920	214	0	0	logfile
✔	5LZS	4130	2022-04-22	2016-10-02	3.31	3.42	3.34	3.3	0.007	1.16	9.0	0.10	18.08	0.01	1.121	2.67	6.66	6.0	93.6	0.5	-2.99	0.80	0.87	2.60	3.3	0.003	0.61	0.0	0.03	17.18	0.00	1.917	11.46	0.60	3.7	96.2	0.0	-0.29	0.69	0.80	0.86	2.08	220934	12153	105	5748	285	0	0	logfile
✔	7S1G	24800	2022-04-26	2021-09-02	2.48	3.04	—	2.9	0.004	0.38	0.0	0.03	14.28	0.01	1.320	3.75	0.80	2.4	97.6	0.1	1.41	0.75	0.86	3.21	2.9	0.003	0.57	0.0	0.03	15.33	0.01	1.808	5.74	2.12	3.5	96.5	0.1	0.64	0.89	0.76	0.88	3.18	240537	5661	66	4638	199	42	96399	logfile
✔	7AA5	11690	2022-04-06	2020-09-03	4.18	4.64	—	4.4	0.006	0.92	2.0	0.04	14.67	0.00	2.119	21.41	2.04	15.1	84.7	0.2	-4.78	0.69	0.80	—	4.4	0.002	0.54	0.0	0.03	13.26	0.00	1.973	64.75	0.00	11.7	88.2	0.2	-0.27	1.12	0.68	0.79	—	19705	2448	5	0	1	0	8	logfile

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