Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6T7D	10394	2023-02-18	2019-10-21	4.4	4.45	4.29	4.1	0.005	0.86	0.0	0.05	32.64	0.01	2.107	2.55	0.00	2.0	98.0	0.0	-2.34	0.86	0.77	—	4.1	0.004	0.65	0.0	0.03	32.45	0.00	2.138	11.97	0.00	2.8	97.2	0.0	3.16	0.72	0.87	0.82	—	8209	853	11	234	0	0	0	logfile
✔	7W9V	32373	2023-02-22	2021-12-10	3.95	4.17	—	4.0	0.006	0.86	0.0	0.05	25.08	0.01	2.021	8.63	0.44	2.0	98.0	0.0	-0.79	0.79	0.65	0.99	4.0	0.003	0.52	0.0	0.03	25.97	0.00	1.961	39.59	0.09	3.1	96.9	0.0	2.06	1.37	0.88	0.84	1.07	18546	1302	11	290	0	0	2136	logfile
✔	7oN1	12993	2023-02-20	2021-05-25	3.35	3.18	—	3.4	0.002	0.47	0.0	0.03	26.28	0.00	2.120	6.38	0.00	1.5	98.5	0.0	-0.25	0.82	0.83	1.11	3.4	0.004	0.56	0.0	0.03	27.34	0.00	2.084	6.23	0.31	3.4	96.6	0.0	2.50	1.33	0.84	0.90	1.58	11150	777	12	246	0	0	0	logfile
✔	6E9Y	9020	2023-02-21	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.005	0.58	0.0	0.03	11.10	0.00	2.001	10.39	0.00	1.7	98.3	0.0	1.61	1.51	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	8BQE	16183	2023-02-20	2022-11-21	3.5	3.35	3.52	3.5	0.013	0.68	0.0	0.08	12.13	0.00	2.159	3.42	0.00	1.2	98.8	0.0	1.72	0.72	0.85	1.92	3.5	0.002	0.43	0.0	0.03	14.43	0.00	2.199	4.33	0.20	1.2	98.8	0.0	2.73	1.39	0.71	0.85	1.29	11274	1452	24	0	90	0	0	logfile
✔	6NoG	0468	2023-02-23	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.004	0.63	0.0	0.03	26.62	0.00	2.153	11.24	0.32	2.2	97.8	0.0	1.84	1.76	0.86	0.85	0.51	14929	1124	12	292	0	0	0	logfile
✔	7RZV	24779	2023-02-16	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	7Sii	25142	2023-02-23	2021-10-14	3.45	3.63	—	3.6	0.008	0.74	0.0	0.03	13.14	0.00	2.220	5.25	2.21	2.9	97.1	0.0	2.94	0.64	0.79	2.61	3.6	0.004	0.55	0.0	0.03	15.31	0.00	2.106	7.44	0.46	3.0	97.0	0.0	2.33	0.51	0.66	0.83	1.88	20484	1286	8	0	4	0	10184	logfile
✔	7P0Z	13153	2023-02-20	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.49	0.0	0.03	18.12	0.00	2.239	4.38	1.64	0.7	99.3	0.0	5.47	0.55	0.84	0.87	2.18	12873	1652	7	0	0	0	0	logfile
✔	6PVK	20491	2023-02-23	2019-07-20	3.4	3.47	—	3.4	0.010	1.03	5.0	0.05	19.36	0.01	1.370	14.08	6.50	10.3	88.7	1.0	-4.94	0.69	0.69	1.32	3.4	0.003	0.59	0.0	0.03	18.05	0.00	2.030	10.12	0.87	7.2	92.7	0.1	-2.40	0.69	0.79	0.80	1.43	60554	1791	18	2169	0	2	0	logfile
✔	7RZR	24775	2023-02-16	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7o0W	12681	2023-02-22	2021-03-27	2.47	2.42	—	2.3	0.017	4.29	0.0	0.05	24.76	0.01	2.010	1.97	0.28	1.4	98.6	0.0	1.25	0.82	0.86	5.37	2.3	0.003	1.66	0.0	0.03	21.33	0.00	1.950	7.87	1.13	0.9	99.1	0.0	3.95	1.13	0.83	0.88	3.99	56476	5076	236	0	320	406	0	logfile
✔	7VoJ	32050	2023-02-17	2021-10-14	3.0	3.21	—	3.3	0.008	1.01	0.0	0.06	13.59	0.01	2.061	7.62	1.73	3.3	96.5	0.3	-2.46	0.65	0.83	2.35	3.3	0.002	0.56	0.0	0.03	16.62	0.00	1.924	4.63	2.02	2.9	97.1	0.0	3.11	2.16	0.60	0.82	1.75	6318	800	4	0	6	0	0	logfile
✔	7o0U	12679	2023-02-22	2021-03-27	2.35	2.42	—	2.3	0.017	4.32	0.0	0.05	24.86	0.01	2.121	1.72	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.3	0.003	1.69	0.0	0.03	21.19	0.00	1.841	7.76	1.07	0.9	99.1	0.0	3.90	0.51	0.84	0.89	4.22	55758	4972	236	0	320	491	0	logfile
✔	7F92	31495	2023-02-23	2021-07-03	3.1	3.23	3.05	3.2	0.008	1.29	0.0	0.05	16.75	0.01	2.271	0.63	2.29	3.0	97.0	0.0	-6.40	0.75	0.90	3.09	3.2	0.002	0.52	0.0	0.03	15.14	0.00	2.314	1.51	0.19	1.2	98.8	0.0	1.49	0.34	0.73	0.90	2.54	21240	2352	36	0	132	264	0	logfile
✔	7PZD	13727	2023-02-26	2021-10-12	3.6	3.77	—	3.8	0.010	1.24	0.0	0.08	16.79	0.01	2.384	6.88	1.27	5.6	94.4	0.0	-3.73	0.68	0.81	1.20	3.8	0.003	0.66	0.0	0.03	18.63	0.01	2.264	8.90	0.35	5.5	94.5	0.0	1.01	5.63	0.67	0.82	0.60	13644	1656	18	0	0	0	0	logfile
✔	7PGQ	13392	2023-02-27	2021-08-15	3.5	3.89	3.50	3.6	0.003	0.45	0.0	0.03	10.46	0.00	1.905	3.80	0.91	1.2	98.8	0.0	-0.24	0.81	0.79	1.38	3.6	0.002	0.54	0.0	0.03	12.83	0.00	2.038	5.60	0.17	3.3	96.6	0.1	1.23	0.73	0.81	0.79	1.31	31508	1970	3	0	2	0	15807	logfile
✔	7RX5	24725	2023-02-19	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.003	0.35	0.0	0.03	13.46	0.00	2.257	6.36	0.00	0.0	100.0	0.0	5.01	0.27	0.71	0.88	2.75	9120	1160	40	0	0	0	0	logfile
✔	6L3U	0826	2023-02-23	2019-10-15	2.53	2.59	2.48	2.6	0.010	0.96	0.0	0.05	16.88	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.53	0.0	0.03	16.80	0.00	2.099	1.40	1.31	0.3	99.7	0.0	2.60	2.33	0.63	0.86	2.92	19698	1206	18	0	12	174	9588	logfile
✔	6NQA	0480	2023-02-23	2019-01-19	3.54	3.64	4.03	3.6	0.007	0.87	0.0	0.05	25.44	0.01	2.283	4.11	0.40	5.8	94.2	0.0	-4.04	0.76	0.81	1.45	3.6	0.003	0.58	0.0	0.03	26.52	0.00	2.126	7.19	0.30	3.2	96.8	0.0	0.09	1.68	0.80	0.83	1.64	15322	1164	13	292	1	0	0	logfile

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