Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ME0	9105	2021-10-05	2018-09-05	3.6	3.74	—	3.6	0.010	1.16	0.0	0.05	17.63	0.01	1.531	13.72	0.00	11.8	88.2	0.0	-5.11	0.89	0.81	2.89	3.6	0.003	0.59	0.0	0.03	17.09	0.00	1.937	17.09	0.00	8.8	91.2	0.0	-2.23	1.23	0.89	0.81	1.95	21539	414	4	845	33	0	0	logfile
✔	6PVK	20491	2021-10-03	2019-07-20	3.4	3.47	—	3.4	0.010	1.03	5.0	0.05	19.36	0.01	1.370	14.05	6.50	10.3	88.7	1.0	-4.94	0.69	0.69	1.32	3.4	0.002	0.55	0.0	0.03	17.62	0.00	2.040	9.42	0.34	6.2	93.7	0.1	-2.06	0.77	0.78	0.79	1.45	60554	1791	18	2169	0	2	0	logfile
✔	5U9F	8521	2021-10-12	2016-12-16	3.2	4.48	—	3.3	0.006	0.95	0.0	0.08	13.57	0.01	2.301	12.47	1.02	10.8	88.2	1.0	-5.04	0.87	0.78	1.55	3.4	0.004	0.67	0.0	0.03	15.83	0.00	1.942	20.89	0.62	9.7	90.2	0.1	-1.87	1.49	0.94	0.90	1.06	152819	6576	72	4729	361	0	0	logfile
✔	5T62	8362	2021-10-05	2016-09-01	3.3	3.38	—	3.4	0.007	1.13	5.0	0.09	17.39	0.01	1.390	1.86	6.32	8.1	89.7	2.2	-4.03	0.68	0.78	3.21	3.3	0.003	0.62	0.0	0.03	16.26	0.00	1.211	5.76	0.46	5.8	93.5	0.7	-1.32	0.73	0.73	0.83	2.37	131766	7061	57	3483	438	6	0	logfile
✔	5LZS	4130	2021-10-14	2016-10-02	3.31	3.42	3.34	3.3	0.007	1.16	9.0	0.10	18.08	0.01	1.121	2.64	6.66	6.0	93.6	0.5	-2.99	0.80	0.87	2.60	3.3	0.003	0.60	0.0	0.03	17.06	0.01	1.959	11.47	0.53	3.5	96.5	0.0	-0.28	0.76	0.80	0.86	2.04	220934	12153	105	5748	285	0	0	logfile
✔	5iQR	8107	2021-10-12	2016-03-11	3.0	3.10	3.03	3.1	0.008	1.25	41.0	0.10	17.19	0.02	0.899	7.46	6.07	7.5	91.0	1.5	-2.52	0.76	0.81	1.93	3.0	0.005	0.72	0.0	0.03	16.61	0.01	1.099	14.85	4.46	5.6	94.1	0.2	-0.74	2.22	0.82	0.86	1.89	154519	6570	74	4794	303	2	0	logfile
✔	6K1P	9719	2021-10-04	2019-05-10	3.87	4.09	—	4.0	0.010	1.02	0.0	0.06	24.72	0.01	1.838	5.23	0.10	8.5	90.9	0.6	-4.45	0.75	0.82	2.45	4.0	0.003	0.60	0.0	0.03	25.47	0.00	1.694	8.68	0.38	5.7	94.3	0.0	0.13	2.48	0.75	0.82	0.95	15841	1230	11	292	3	0	0	logfile
✔	6JYL	9718	2021-10-04	2019-04-26	3.37	4.00	—	3.4	0.008	0.83	0.0	0.05	24.45	0.01	2.086	2.68	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.5	0.003	0.59	0.0	0.03	24.64	0.00	1.661	7.71	0.09	4.2	95.8	0.0	0.91	0.58	0.90	0.88	1.85	16136	1265	11	292	3	0	0	logfile
✔	6PX1	20516	2021-10-03	2019-07-24	3.3	3.48	—	3.4	0.006	0.87	0.0	0.05	28.73	0.01	2.228	2.28	0.00	1.9	98.1	0.0	-2.98	0.79	0.83	3.70	3.4	0.004	0.57	0.0	0.03	28.72	0.00	2.105	8.83	0.16	1.9	98.1	0.0	2.43	0.45	0.80	0.84	2.45	11937	752	10	290	0	0	0	logfile
✔	6oT3	20193	2021-10-09	2019-05-02	3.9	5.27	—	3.3	0.007	0.83	2.0	0.04	15.92	0.02	1.940	11.87	0.28	5.0	94.9	0.1	-3.85	0.92	0.88	0.62	3.3	0.004	0.71	0.0	0.03	16.45	0.01	1.920	28.03	0.51	5.7	94.3	0.0	-1.34	2.41	0.92	0.88	0.61	146899	6031	62	4642	14	0	0	logfile
✔	5A6E	3062	2021-10-03	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	7.88	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.64	0.0	0.03	10.48	0.00	1.913	15.76	0.00	5.3	94.7	0.0	-0.60	2.60	0.41	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	6E9E	9013	2021-10-03	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	10.72	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.5	0.002	0.53	0.0	0.03	13.98	0.00	2.254	5.96	0.13	1.6	98.4	0.0	0.77	1.13	0.78	0.88	3.39	8163	863	3	51	1	0	0	logfile
✔	6oT2	20192	2021-10-06	2019-05-02	4.1	4.25	4.02	4.1	0.009	0.87	0.0	0.05	8.41	0.01	2.066	5.94	0.00	7.3	92.7	0.0	-2.26	0.71	0.76	—	4.1	0.004	0.57	0.0	0.03	10.81	0.00	2.032	8.81	0.00	8.2	91.8	0.0	0.94	1.73	0.71	0.76	—	32311	2444	4	0	56	0	14975	logfile
✔	6VAK	21141	2021-10-05	2019-12-17	3.48	3.85	—	3.8	0.004	0.77	0.0	0.04	14.36	0.00	2.047	7.08	2.96	8.2	91.8	0.0	-2.80	0.73	0.80	3.28	3.8	0.002	0.59	0.0	0.03	16.56	0.00	2.170	5.92	0.36	5.7	94.2	0.0	2.54	0.59	0.72	0.83	2.68	22781	2992	11	0	0	0	0	logfile
✔	6oT5	20194	2021-10-06	2019-05-02	3.6	3.71	3.54	3.7	0.009	0.85	0.0	0.05	9.27	0.00	1.623	6.48	0.00	3.0	97.0	0.0	-2.73	0.65	0.76	3.18	3.7	0.002	0.50	0.0	0.03	13.68	0.00	2.002	5.86	0.28	3.9	96.1	0.0	0.74	0.86	0.68	0.78	2.60	33420	2444	8	0	52	0	15620	logfile
✔	6E0P	8949	2021-10-04	2018-07-06	2.6	2.80	2.51	2.7	0.007	0.85	0.0	0.05	25.48	0.01	2.253	2.30	0.00	4.8	95.2	0.0	-2.18	0.79	0.86	4.43	2.7	0.003	0.63	0.0	0.03	27.04	0.00	2.078	7.74	1.36	4.0	96.0	0.0	1.47	1.14	0.80	0.88	3.29	15567	1220	12	290	0	0	0	logfile
✔	6GC7	4382	2021-10-03	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.08	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.007	0.66	0.0	0.03	15.41	0.01	1.943	25.39	0.00	8.2	91.7	0.1	-1.98	1.76	0.91	0.86	—	54410	1738	17	1901	0	0	0	logfile
✔	6GBZ	4378	2021-10-06	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.80	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.002	0.57	0.0	0.03	15.36	0.00	2.008	13.89	1.04	7.6	92.4	0.0	-1.64	1.56	0.78	0.76	0.95	86401	3074	29	2908	0	0	0	logfile
✔	3JCN	3285	2021-10-09	2016-01-04	4.6	4.58	—	4.4	0.007	1.08	9.0	0.10	12.71	0.01	1.344	3.02	0.18	6.9	91.6	1.5	-3.44	0.75	0.65	—	4.4	0.003	0.68	0.0	0.03	15.73	0.01	2.009	24.35	0.02	9.9	89.6	0.5	-2.26	1.18	0.81	0.78	—	147292	6123	57	4638	1	0	0	logfile
✔	6oUo	20204	2021-10-09	2019-05-05	3.7	4.99	—	3.3	0.007	0.83	1.0	0.04	15.93	0.02	1.584	12.03	0.36	5.1	94.8	0.1	-3.86	0.89	0.75	0.10	3.3	0.003	0.73	0.0	0.03	17.04	0.01	1.913	30.50	0.69	5.7	94.3	0.0	-1.55	3.94	0.92	0.84	0.36	146867	6028	61	4642	14	0	0	logfile

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