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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6T7D | 10394 | 2023-02-18 | 2019-10-21 | 4.4 | 4.45 | 4.29 | 4.1 | 0.005 | 0.86 | 0.0 | 0.05 | 32.64 | 0.01 | 2.107 | 2.55 | 0.00 | 2.0 | 98.0 | 0.0 | -2.34 | 0.86 | 0.77 | — | 4.1 | 0.004 | 0.65 | 0.0 | 0.03 | 32.45 | 0.00 | 2.138 | 11.97 | 0.00 | 2.8 | 97.2 | 0.0 | 3.16 | 0.72 | 0.87 | 0.82 | — | 8209 | 853 | 11 | 234 | 0 | 0 | 0 | logfile |
✔ | 7W9V | 32373 | 2023-02-22 | 2021-12-10 | 3.95 | 4.17 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 25.08 | 0.01 | 2.021 | 8.63 | 0.44 | 2.0 | 98.0 | 0.0 | -0.79 | 0.79 | 0.65 | 0.99 | 4.0 | 0.003 | 0.52 | 0.0 | 0.03 | 25.97 | 0.00 | 1.961 | 39.59 | 0.09 | 3.1 | 96.9 | 0.0 | 2.06 | 1.37 | 0.88 | 0.84 | 1.07 | 18546 | 1302 | 11 | 290 | 0 | 0 | 2136 | logfile |
✔ | 7oN1 | 12993 | 2023-02-20 | 2021-05-25 | 3.35 | 3.18 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.03 | 26.28 | 0.00 | 2.120 | 6.38 | 0.00 | 1.5 | 98.5 | 0.0 | -0.25 | 0.82 | 0.83 | 1.11 | 3.4 | 0.004 | 0.56 | 0.0 | 0.03 | 27.34 | 0.00 | 2.084 | 6.23 | 0.31 | 3.4 | 96.6 | 0.0 | 2.50 | 1.33 | 0.84 | 0.90 | 1.58 | 11150 | 777 | 12 | 246 | 0 | 0 | 0 | logfile |
✔ | 6E9Y | 9020 | 2023-02-21 | 2018-08-01 | 4.3 | 4.50 | — | 4.3 | 0.008 | 0.73 | 0.0 | 0.04 | 7.51 | 0.00 | 1.433 | 25.35 | 0.00 | 3.1 | 96.9 | 0.0 | -3.58 | 0.75 | 0.80 | — | 4.3 | 0.005 | 0.58 | 0.0 | 0.03 | 11.10 | 0.00 | 2.001 | 10.39 | 0.00 | 1.7 | 98.3 | 0.0 | 1.61 | 1.51 | 0.76 | 0.82 | — | 54450 | 3405 | 15 | 0 | 0 | 0 | 28155 | logfile |
✔ | 8BQE | 16183 | 2023-02-20 | 2022-11-21 | 3.5 | 3.35 | 3.52 | 3.5 | 0.013 | 0.68 | 0.0 | 0.08 | 12.13 | 0.00 | 2.159 | 3.42 | 0.00 | 1.2 | 98.8 | 0.0 | 1.72 | 0.72 | 0.85 | 1.92 | 3.5 | 0.002 | 0.43 | 0.0 | 0.03 | 14.43 | 0.00 | 2.199 | 4.33 | 0.20 | 1.2 | 98.8 | 0.0 | 2.73 | 1.39 | 0.71 | 0.85 | 1.29 | 11274 | 1452 | 24 | 0 | 90 | 0 | 0 | logfile |
✔ | 6NoG | 0468 | 2023-02-23 | 2019-01-16 | 3.9 | 4.05 | 4.50 | 3.9 | 0.009 | 1.12 | 1.0 | 0.06 | 26.55 | 0.01 | 2.239 | 6.27 | 0.84 | 4.1 | 95.9 | 0.0 | -1.83 | 0.84 | 0.81 | 0.53 | 3.9 | 0.004 | 0.63 | 0.0 | 0.03 | 26.62 | 0.00 | 2.153 | 11.24 | 0.32 | 2.2 | 97.8 | 0.0 | 1.84 | 1.76 | 0.86 | 0.85 | 0.51 | 14929 | 1124 | 12 | 292 | 0 | 0 | 0 | logfile |
✔ | 7RZV | 24779 | 2023-02-16 | 2021-08-27 | 2.11 | 2.24 | — | 2.0 | 0.005 | 0.35 | 0.0 | 0.03 | 14.68 | 0.00 | 2.348 | 5.44 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.79 | 0.80 | 2.21 | 2.0 | 0.004 | 0.37 | 0.0 | 0.03 | 15.99 | 0.00 | 2.228 | 4.86 | 0.67 | 0.0 | 100.0 | 0.0 | 5.66 | 0.87 | 0.83 | 0.83 | 1.88 | 2562 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Sii | 25142 | 2023-02-23 | 2021-10-14 | 3.45 | 3.63 | — | 3.6 | 0.008 | 0.74 | 0.0 | 0.03 | 13.14 | 0.00 | 2.220 | 5.25 | 2.21 | 2.9 | 97.1 | 0.0 | 2.94 | 0.64 | 0.79 | 2.61 | 3.6 | 0.004 | 0.55 | 0.0 | 0.03 | 15.31 | 0.00 | 2.106 | 7.44 | 0.46 | 3.0 | 97.0 | 0.0 | 2.33 | 0.51 | 0.66 | 0.83 | 1.88 | 20484 | 1286 | 8 | 0 | 4 | 0 | 10184 | logfile |
✔ | 7P0Z | 13153 | 2023-02-20 | 2021-07-01 | 2.43 | 2.02 | 2.41 | 2.2 | 0.016 | 0.94 | 0.0 | 0.06 | 14.02 | 0.01 | 2.141 | 7.29 | 0.00 | 4.3 | 95.7 | 0.0 | 1.90 | 0.83 | 0.86 | 2.91 | 2.3 | 0.002 | 0.49 | 0.0 | 0.03 | 18.12 | 0.00 | 2.239 | 4.38 | 1.64 | 0.7 | 99.3 | 0.0 | 5.47 | 0.55 | 0.84 | 0.87 | 2.18 | 12873 | 1652 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PVK | 20491 | 2023-02-23 | 2019-07-20 | 3.4 | 3.47 | — | 3.4 | 0.010 | 1.03 | 5.0 | 0.05 | 19.36 | 0.01 | 1.370 | 14.08 | 6.50 | 10.3 | 88.7 | 1.0 | -4.94 | 0.69 | 0.69 | 1.32 | 3.4 | 0.003 | 0.59 | 0.0 | 0.03 | 18.05 | 0.00 | 2.030 | 10.12 | 0.87 | 7.2 | 92.7 | 0.1 | -2.40 | 0.69 | 0.79 | 0.80 | 1.43 | 60554 | 1791 | 18 | 2169 | 0 | 2 | 0 | logfile |
✔ | 7RZR | 24775 | 2023-02-16 | 2021-08-27 | 2.27 | 2.24 | — | 2.0 | 0.007 | 0.40 | 0.0 | 0.04 | 14.34 | 0.00 | 2.436 | 3.23 | 0.00 | 1.9 | 98.1 | 0.0 | 2.50 | 0.79 | 0.80 | 3.37 | 2.0 | 0.002 | 0.36 | 0.0 | 0.03 | 15.29 | 0.00 | 2.294 | 4.44 | 0.71 | 0.0 | 100.0 | 0.0 | 6.53 | 0.31 | 0.81 | 0.83 | 3.42 | 2448 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o0W | 12681 | 2023-02-22 | 2021-03-27 | 2.47 | 2.42 | — | 2.3 | 0.017 | 4.29 | 0.0 | 0.05 | 24.76 | 0.01 | 2.010 | 1.97 | 0.28 | 1.4 | 98.6 | 0.0 | 1.25 | 0.82 | 0.86 | 5.37 | 2.3 | 0.003 | 1.66 | 0.0 | 0.03 | 21.33 | 0.00 | 1.950 | 7.87 | 1.13 | 0.9 | 99.1 | 0.0 | 3.95 | 1.13 | 0.83 | 0.88 | 3.99 | 56476 | 5076 | 236 | 0 | 320 | 406 | 0 | logfile |
✔ | 7VoJ | 32050 | 2023-02-17 | 2021-10-14 | 3.0 | 3.21 | — | 3.3 | 0.008 | 1.01 | 0.0 | 0.06 | 13.59 | 0.01 | 2.061 | 7.62 | 1.73 | 3.3 | 96.5 | 0.3 | -2.46 | 0.65 | 0.83 | 2.35 | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 16.62 | 0.00 | 1.924 | 4.63 | 2.02 | 2.9 | 97.1 | 0.0 | 3.11 | 2.16 | 0.60 | 0.82 | 1.75 | 6318 | 800 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7o0U | 12679 | 2023-02-22 | 2021-03-27 | 2.35 | 2.42 | — | 2.3 | 0.017 | 4.32 | 0.0 | 0.05 | 24.86 | 0.01 | 2.121 | 1.72 | 0.41 | 1.2 | 98.8 | 0.0 | 1.39 | 0.83 | 0.86 | 5.52 | 2.3 | 0.003 | 1.69 | 0.0 | 0.03 | 21.19 | 0.00 | 1.841 | 7.76 | 1.07 | 0.9 | 99.1 | 0.0 | 3.90 | 0.51 | 0.84 | 0.89 | 4.22 | 55758 | 4972 | 236 | 0 | 320 | 491 | 0 | logfile |
✔ | 7F92 | 31495 | 2023-02-23 | 2021-07-03 | 3.1 | 3.23 | 3.05 | 3.2 | 0.008 | 1.29 | 0.0 | 0.05 | 16.75 | 0.01 | 2.271 | 0.63 | 2.29 | 3.0 | 97.0 | 0.0 | -6.40 | 0.75 | 0.90 | 3.09 | 3.2 | 0.002 | 0.52 | 0.0 | 0.03 | 15.14 | 0.00 | 2.314 | 1.51 | 0.19 | 1.2 | 98.8 | 0.0 | 1.49 | 0.34 | 0.73 | 0.90 | 2.54 | 21240 | 2352 | 36 | 0 | 132 | 264 | 0 | logfile |
✔ | 7PZD | 13727 | 2023-02-26 | 2021-10-12 | 3.6 | 3.77 | — | 3.8 | 0.010 | 1.24 | 0.0 | 0.08 | 16.79 | 0.01 | 2.384 | 6.88 | 1.27 | 5.6 | 94.4 | 0.0 | -3.73 | 0.68 | 0.81 | 1.20 | 3.8 | 0.003 | 0.66 | 0.0 | 0.03 | 18.63 | 0.01 | 2.264 | 8.90 | 0.35 | 5.5 | 94.5 | 0.0 | 1.01 | 5.63 | 0.67 | 0.82 | 0.60 | 13644 | 1656 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PGQ | 13392 | 2023-02-27 | 2021-08-15 | 3.5 | 3.89 | 3.50 | 3.6 | 0.003 | 0.45 | 0.0 | 0.03 | 10.46 | 0.00 | 1.905 | 3.80 | 0.91 | 1.2 | 98.8 | 0.0 | -0.24 | 0.81 | 0.79 | 1.38 | 3.6 | 0.002 | 0.54 | 0.0 | 0.03 | 12.83 | 0.00 | 2.038 | 5.60 | 0.17 | 3.3 | 96.6 | 0.1 | 1.23 | 0.73 | 0.81 | 0.79 | 1.31 | 31508 | 1970 | 3 | 0 | 2 | 0 | 15807 | logfile |
✔ | 7RX5 | 24725 | 2023-02-19 | 2021-08-21 | 3.4 | 3.65 | — | 3.6 | 0.002 | 0.25 | 0.0 | 0.03 | 11.98 | 0.00 | 2.288 | 5.05 | 0.00 | 0.0 | 100.0 | 0.0 | 4.54 | 0.70 | 0.85 | 3.58 | 3.6 | 0.003 | 0.35 | 0.0 | 0.03 | 13.46 | 0.00 | 2.257 | 6.36 | 0.00 | 0.0 | 100.0 | 0.0 | 5.01 | 0.27 | 0.71 | 0.88 | 2.75 | 9120 | 1160 | 40 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L3U | 0826 | 2023-02-23 | 2019-10-15 | 2.53 | 2.59 | 2.48 | 2.6 | 0.010 | 0.96 | 0.0 | 0.05 | 16.88 | 0.01 | 2.206 | 0.45 | 3.01 | 1.9 | 98.1 | 0.0 | -2.86 | 0.64 | 0.84 | 4.02 | 2.6 | 0.002 | 0.53 | 0.0 | 0.03 | 16.80 | 0.00 | 2.099 | 1.40 | 1.31 | 0.3 | 99.7 | 0.0 | 2.60 | 2.33 | 0.63 | 0.86 | 2.92 | 19698 | 1206 | 18 | 0 | 12 | 174 | 9588 | logfile |
✔ | 6NQA | 0480 | 2023-02-23 | 2019-01-19 | 3.54 | 3.64 | 4.03 | 3.6 | 0.007 | 0.87 | 0.0 | 0.05 | 25.44 | 0.01 | 2.283 | 4.11 | 0.40 | 5.8 | 94.2 | 0.0 | -4.04 | 0.76 | 0.81 | 1.45 | 3.6 | 0.003 | 0.58 | 0.0 | 0.03 | 26.52 | 0.00 | 2.126 | 7.19 | 0.30 | 3.2 | 96.8 | 0.0 | 0.09 | 1.68 | 0.80 | 0.83 | 1.64 | 15322 | 1164 | 13 | 292 | 1 | 0 | 0 | logfile |