Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N8o	0374	2021-08-11	2018-11-29	3.5	3.74	—	3.6	0.007	0.90	2.0	0.05	14.62	0.01	1.297	2.91	0.56	7.2	92.4	0.4	-4.60	0.82	0.89	3.44	3.6	0.004	0.64	1.0	0.03	15.49	0.00	1.837	8.63	0.28	7.1	92.7	0.1	-1.11	2.76	0.82	0.88	2.44	133453	7292	49	3480	302	0	0	logfile
✔	6N8L	0371	2021-08-10	2018-11-29	3.6	3.79	—	3.7	0.007	0.93	0.0	0.05	15.30	0.01	2.200	3.55	0.64	7.3	92.2	0.5	-4.50	0.80	0.87	3.56	3.7	0.003	0.60	1.0	0.03	16.13	0.00	2.062	9.07	0.68	7.9	92.0	0.1	-1.28	1.28	0.80	0.87	2.35	129926	6884	48	3479	210	0	0	logfile
✔	6MHo	9115	2021-08-10	2018-09-18	3.4	3.50	3.41	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.84	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.4	0.003	0.53	0.0	0.03	13.01	0.00	1.990	6.57	0.00	4.5	95.5	0.0	1.40	2.10	0.68	0.80	3.49	32224	2404	4	0	0	0	15184	logfile
✔	6VPS	21316	2021-08-07	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.002	0.48	0.0	0.03	19.69	0.00	2.391	3.50	1.63	6.9	93.1	0.0	-3.67	1.20	0.47	0.87	6.71	2736	279	9	0	0	0	0	logfile
✔	6WCB	21605	2021-08-08	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.002	0.47	0.0	0.03	15.68	0.00	2.040	3.62	0.00	1.5	98.5	0.0	3.79	1.32	0.56	0.79	2.12	11647	734	6	0	7	40	5904	logfile
✔	6WCC	21606	2021-08-08	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.002	0.48	0.0	0.03	15.76	0.00	2.209	5.34	0.16	2.3	97.7	0.0	4.55	1.70	0.54	0.79	1.80	11629	734	6	0	5	12	5908	logfile
✔	5LZD	4124	2021-08-17	2016-09-29	3.4	3.48	3.51	3.4	0.009	1.23	9.0	0.08	13.74	0.02	2.023	6.14	0.71	7.6	91.0	1.4	-3.90	0.75	0.86	2.27	3.4	0.004	0.69	1.0	0.03	14.85	0.01	1.929	13.11	0.96	7.7	92.1	0.3	-1.78	0.60	0.75	0.86	1.50	153177	6439	68	4785	152	2	0	logfile
✔	6Z6K	11097	2021-08-12	2020-05-28	3.4	3.44	—	3.4	0.010	0.93	0.0	0.05	16.58	0.01	1.650	14.43	0.69	11.6	87.9	0.5	-3.91	0.79	0.84	2.41	3.4	0.003	0.60	0.0	0.03	16.31	0.01	1.419	11.64	0.57	8.2	91.6	0.2	-1.03	1.20	0.78	0.84	1.86	196360	11052	88	5105	9	0	0	logfile
✔	6oSK	20184	2021-08-14	2019-05-01	3.6	3.41	—	3.3	0.008	0.85	1.0	0.05	14.66	0.02	1.837	5.18	0.51	5.2	94.6	0.1	-4.40	0.78	0.85	2.75	3.3	0.005	0.65	1.0	0.03	15.51	0.01	1.785	15.18	0.47	4.1	95.8	0.0	-1.10	1.75	0.77	0.84	1.57	146659	5969	65	4642	309	0	0	logfile
✔	6LU8	0978	2021-08-13	2020-01-26	3.13	3.21	—	3.1	0.012	1.42	4.0	0.07	17.29	0.03	1.060	2.97	1.29	7.2	92.5	0.2	-4.70	0.81	0.83	2.92	3.1	0.006	0.82	3.0	0.03	16.92	0.01	1.945	8.59	0.18	5.9	94.0	0.1	-0.80	0.41	0.83	0.86	2.50	143909	7778	66	3753	247	16	0	logfile
✔	6MRU	9213	2021-08-08	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.48	0.0	0.03	13.33	0.00	2.202	3.21	0.06	1.2	98.8	0.0	5.39	3.90	0.76	0.86	1.88	29107	3705	13	0	0	0	0	logfile
✔	5LMN	4073	2021-08-08	2016-08-01	3.55	3.68	3.61	3.6	0.007	1.42	35.0	0.12	20.67	0.01	0.925	19.66	21.59	10.4	86.7	2.8	-2.30	0.79	0.88	1.35	3.6	0.003	0.68	0.0	0.03	16.90	0.01	1.965	17.59	0.87	6.9	92.9	0.3	-0.97	1.59	0.76	0.83	1.32	54149	2623	27	1534	129	0	0	logfile
✔	6L3V	0827	2021-08-09	2019-10-15	2.63	2.90	2.72	2.9	0.011	0.92	0.0	0.04	17.00	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.59	0.0	0.03	16.41	0.00	2.191	2.41	1.52	0.5	99.5	0.0	2.58	3.59	0.59	0.86	2.76	19416	1206	12	0	6	0	9528	logfile
✔	7BV8	30215	2021-08-12	2020-04-09	3.14	3.53	—	3.5	0.007	0.75	0.0	0.04	15.53	0.01	2.007	9.09	0.29	8.3	91.5	0.3	-4.23	0.72	0.82	3.09	3.5	0.004	0.60	0.0	0.03	15.37	0.00	2.062	8.11	0.29	5.2	94.8	0.1	-1.57	1.13	0.71	0.83	2.53	91505	3436	32	3017	0	0	0	logfile
✔	6o1D	0586	2021-08-08	2019-02-19	3.395	3.57	—	3.5	0.010	0.95	1.0	0.05	28.08	0.01	2.317	2.17	0.00	3.4	96.6	0.0	-4.72	0.79	0.87	4.13	3.5	0.003	0.57	0.0	0.03	27.92	0.00	2.219	7.40	0.16	2.1	97.9	0.0	0.63	0.54	0.80	0.88	2.70	11982	761	10	290	0	0	0	logfile
✔	6oT5	20194	2021-08-10	2019-05-02	3.6	3.71	3.54	3.7	0.009	0.85	0.0	0.05	9.27	0.00	1.623	6.48	0.00	3.0	97.0	0.0	-2.73	0.65	0.76	3.18	3.7	0.002	0.50	0.0	0.03	13.68	0.00	2.002	5.86	0.28	3.9	96.1	0.0	0.74	0.86	0.68	0.78	2.60	33420	2444	8	0	52	0	15620	logfile
✔	6PC8	20299	2021-08-10	2019-06-16	2.9	3.26	—	3.1	0.006	0.48	0.0	0.03	12.75	0.02	1.931	3.23	2.62	7.2	92.7	0.1	-4.11	0.71	0.86	3.45	3.1	0.004	0.62	0.0	0.03	14.83	0.01	2.112	9.57	3.27	7.3	92.6	0.1	-1.60	1.26	0.73	0.88	3.30	72169	967	8	3015	1	0	0	logfile
✔	6PCT	20307	2021-08-10	2019-06-18	2.8	3.01	—	2.9	0.006	0.52	2.0	0.03	12.86	0.02	1.891	2.94	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.004	0.61	0.0	0.03	14.66	0.01	2.024	8.26	3.29	6.0	93.9	0.1	-0.89	1.25	0.68	0.88	4.19	72198	964	8	3015	1	0	0	logfile
✔	6E0P	8949	2021-08-08	2018-07-06	2.6	2.80	2.51	2.7	0.007	0.85	0.0	0.05	25.48	0.01	2.253	2.30	0.00	4.8	95.2	0.0	-2.18	0.79	0.86	4.43	2.7	0.003	0.63	0.0	0.03	27.04	0.00	2.078	7.74	1.36	4.0	96.0	0.0	1.47	1.14	0.80	0.88	3.29	15567	1220	12	290	0	0	0	logfile
✔	5LZF	4126	2021-08-15	2016-09-29	4.6	4.86	4.78	4.6	0.008	1.17	5.0	0.08	14.20	0.02	2.141	4.69	0.02	7.1	90.8	2.1	-2.74	0.83	0.85	—	4.6	0.005	0.78	2.0	0.03	15.55	0.01	1.508	29.56	0.06	7.8	91.6	0.5	-1.44	2.46	0.84	0.86	—	148005	5824	58	4779	2	0	0	logfile

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