Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6i5A	4413	2022-11-29	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✔	6XPD	22285	2022-11-29	2020-07-08	3.8	3.62	—	3.7	0.007	0.77	0.0	0.04	14.37	0.00	1.461	13.89	0.20	9.4	90.6	0.0	-3.83	0.60	0.85	1.65	3.6	0.004	0.74	0.0	0.04	16.82	0.00	1.978	10.69	0.78	5.1	94.9	0.0	1.30	1.38	0.60	0.83	2.30	4622	606	4	0	4	0	0	logfile
✔	6WM0	21846	2022-11-29	2020-04-20	3.52	3.75	—	3.7	0.003	0.59	0.0	0.04	14.11	0.00	2.281	6.43	0.00	2.6	97.4	0.0	-0.89	0.74	0.81	2.63	3.7	0.003	0.64	0.0	0.04	16.30	0.00	2.226	7.39	0.47	3.0	97.0	0.0	3.21	2.37	0.73	0.81	2.04	4105	510	3	0	5	0	0	logfile
✔	6FU8	4319	2022-11-29	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	6Z3T	11064	2022-11-29	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.84	1.0	0.07	18.57	0.01	2.284	6.72	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.003	1.12	0.0	0.04	19.79	0.00	2.256	13.72	2.14	7.7	92.3	0.0	-1.72	0.92	0.21	0.66	1.55	3608	441	4	0	21	0	0	logfile
✔	6UKJ	20806	2022-11-29	2019-10-05	3.3	3.53	3.32	3.4	0.007	0.91	0.0	0.05	13.71	0.01	2.114	6.29	0.79	4.5	95.1	0.3	-3.21	0.62	0.81	3.08	3.4	0.003	0.64	0.0	0.04	16.04	0.00	2.145	11.17	0.20	3.8	96.2	0.0	0.14	1.54	0.64	0.83	2.29	4625	582	4	0	1	0	0	logfile
✔	3JBS	6478	2022-11-29	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.63	0.0	0.04	17.65	0.00	2.262	7.24	1.97	1.7	98.3	0.0	1.01	1.32	0.21	0.81	3.18	1401	175	1	0	0	0	0	logfile
✔	6Y97	10733	2022-11-29	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.28	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.70	0.0	0.04	13.16	0.00	2.048	14.34	0.00	6.7	93.3	0.0	0.68	0.90	0.71	0.71	—	4366	564	4	0	0	0	0	logfile
✔	6ZRQ	11382	2022-11-29	2020-07-14	3.9	4.06	—	4.2	0.014	1.20	0.0	0.05	12.20	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.70	0.0	0.04	12.79	0.00	2.180	20.13	0.00	15.4	84.6	0.0	-5.93	2.13	0.70	0.77	2.95	3816	276	12	0	0	0	1776	logfile
✔	7BX7	30235	2022-11-29	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	7LCK	23276	2022-11-29	2021-01-11	3.24	3.84	3.15	3.6	0.008	1.05	4.0	0.07	14.23	0.01	2.160	7.79	1.16	6.7	93.3	0.0	-0.93	0.69	0.79	2.21	3.7	0.003	0.62	0.0	0.04	15.17	0.00	2.228	4.83	0.58	4.1	95.9	0.0	0.64	0.55	0.66	0.79	2.04	3258	390	1	0	1	11	0	logfile
✔	6F1Y	4171	2022-11-29	2017-11-23	3.4	4.18	—	3.6	0.011	1.94	0.0	0.09	11.72	0.01	2.069	14.38	0.74	17.2	82.6	0.2	-4.92	0.50	0.74	0.93	3.6	0.004	0.88	0.0	0.04	15.64	0.00	2.238	16.71	0.49	9.8	90.2	0.0	-1.19	2.15	0.50	0.76	0.93	4316	472	2	0	111	0	0	logfile
✔	6SKi	10225	2022-11-29	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.003	0.59	0.0	0.04	16.68	0.00	2.245	7.39	1.51	2.7	97.3	0.0	0.77	0.50	0.62	0.83	4.32	4434	569	2	0	0	0	0	logfile
✔	7KNU	22963	2022-11-29	2020-11-06	3.49	4.38	3.61	4.1	0.003	0.64	0.0	0.04	14.11	0.01	2.141	9.64	0.00	4.0	96.0	0.0	-1.59	0.59	0.76	1.17	4.1	0.003	0.70	0.0	0.04	16.16	0.00	2.174	14.14	0.00	4.0	96.0	0.0	-0.39	0.58	0.59	0.77	0.52	3809	467	3	0	0	0	0	logfile
✔	7DA5	30623	2022-11-29	2020-10-14	3.3	3.66	—	3.8	0.008	1.21	10.0	0.09	16.47	0.01	1.673	16.17	10.06	9.1	90.6	0.3	-3.63	0.43	0.58	1.81	3.7	0.003	0.78	0.0	0.04	16.02	0.00	2.247	8.68	0.61	4.6	95.4	0.0	0.21	1.48	0.49	0.72	2.29	4013	591	2	0	0	0	0	logfile
✔	6X0V	21985	2022-11-29	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	6XQo	22291	2022-11-29	2020-07-09	3.1	3.54	—	3.5	0.004	0.57	0.0	0.04	15.61	0.00	1.956	9.56	3.52	4.4	95.6	0.0	-2.83	0.76	0.75	2.70	3.5	0.003	0.65	0.0	0.04	16.71	0.00	2.150	11.62	0.00	2.4	97.6	0.0	0.53	1.26	0.78	0.78	1.41	4301	560	4	0	4	0	0	logfile
✔	6M49	30074	2022-11-29	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.32	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.84	0.0	0.04	16.18	0.00	2.192	10.57	0.66	2.9	97.1	0.0	1.84	3.61	0.48	0.73	1.18	3098	420	3	0	1	0	0	logfile
✔	7CKo	30389	2022-11-29	2020-07-18	2.95	3.28	—	3.3	0.012	1.32	10.0	0.13	16.64	0.01	1.964	12.09	12.88	9.1	90.8	0.2	-2.69	0.47	0.62	2.15	3.3	0.003	0.82	0.0	0.04	16.33	0.01	2.244	8.81	3.99	4.1	95.9	0.0	-0.27	2.25	0.47	0.70	2.65	4029	591	3	0	1	0	0	logfile
✔	6ZRF	11380	2022-11-29	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.03	0.0	0.05	13.43	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.003	0.73	0.0	0.04	14.44	0.00	2.284	18.31	0.42	10.6	89.4	0.0	-5.84	0.52	0.69	0.81	3.45	2220	300	12	0	0	0	0	logfile

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