Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YoJ	33983	2023-08-12	2022-08-01	3.36	3.79	3.58	3.7	0.005	0.87	0.0	0.05	20.71	0.01	2.304	7.98	2.19	5.9	93.6	0.5	-2.03	0.77	0.77	1.75	3.6	0.003	0.65	0.0	0.03	20.44	0.00	2.094	13.72	0.27	5.3	94.7	0.0	0.21	1.01	0.77	0.81	1.68	11545	867	4	216	0	0	0	logfile
✔	6PX1	20516	2023-08-12	2019-07-24	3.3	3.48	—	3.4	0.006	0.87	0.0	0.05	28.73	0.01	2.228	2.28	0.00	1.9	98.1	0.0	-2.98	0.79	0.83	3.70	3.4	0.003	0.56	0.0	0.03	28.54	0.00	2.105	9.02	0.00	1.8	98.2	0.0	2.61	1.13	0.79	0.84	2.47	11937	752	10	290	0	0	0	logfile
✔	7DBP	30161	2023-08-13	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.005	0.66	0.0	0.03	30.47	0.00	2.147	27.18	0.00	3.7	96.3	0.0	0.77	2.53	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✔	7PF5	13368	2023-08-14	2021-08-11	3.8	4.51	—	3.4	0.006	0.89	0.0	0.05	29.08	0.01	2.264	6.06	0.00	1.8	98.2	0.0	-0.59	0.87	0.80	0.89	3.4	0.004	0.68	0.0	0.03	29.24	0.00	2.129	17.53	0.29	2.5	97.5	0.0	0.77	0.69	0.87	0.81	0.67	13470	843	11	334	0	0	0	logfile
✔	8CoM	16777	2023-08-11	2023-02-28	3.3	3.62	3.41	3.7	0.004	0.57	0.0	0.03	28.74	0.00	2.228	8.93	0.34	1.7	98.3	0.0	2.02	0.70	0.82	1.34	3.7	0.003	0.54	0.0	0.03	28.68	0.00	2.188	8.88	0.69	1.0	99.0	0.0	2.63	0.92	0.68	0.80	1.13	10705	708	10	254	0	0	0	logfile
✔	7MVV	24057	2023-08-18	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.002	0.53	0.0	0.03	10.98	0.00	2.021	7.18	0.07	3.0	97.0	0.0	2.84	0.96	0.89	0.82	1.13	25764	1609	4	0	0	0	12907	logfile
✔	7RQV	24637	2023-08-23	2021-08-08	3.45	3.65	—	3.6	0.011	0.97	0.0	0.06	15.90	0.01	2.226	7.82	0.00	4.4	95.6	0.0	-0.71	0.63	0.74	2.29	3.7	0.004	0.53	0.0	0.03	15.75	0.00	2.135	8.22	0.06	5.6	94.4	0.0	-0.29	0.43	0.65	0.78	2.24	34298	2320	8	0	22	0	16236	logfile
✔	7Q49	13799	2023-08-11	2021-10-29	3.72	4.35	3.97	4.2	0.008	1.08	0.0	0.06	13.93	0.01	1.995	6.54	0.19	2.9	97.1	0.0	-1.50	0.67	0.70	2.02	4.2	0.003	0.62	0.0	0.03	16.57	0.00	1.930	7.41	0.38	3.4	96.6	0.0	1.29	0.92	0.66	0.67	1.19	10124	616	8	0	26	1	4788	logfile
✔	7XQ9	33391	2023-08-16	2022-05-07	3.3	3.62	3.55	3.8	0.005	0.83	0.0	0.06	14.70	0.01	2.253	1.72	3.89	3.6	96.4	0.0	-2.05	0.52	0.82	2.74	3.8	0.002	0.51	0.0	0.03	15.61	0.00	2.205	4.12	0.14	2.2	97.8	0.0	3.52	0.53	0.54	0.83	2.53	19632	2412	12	0	0	0	0	logfile
✔	6VAK	21141	2023-08-17	2019-12-17	3.48	3.85	—	3.8	0.004	0.77	0.0	0.04	14.36	0.00	2.047	7.47	2.96	8.2	91.8	0.0	-2.80	0.73	0.81	3.28	3.8	0.002	0.58	0.0	0.03	16.38	0.00	2.190	5.71	0.72	5.9	94.1	0.0	2.31	0.55	0.70	0.82	2.80	22781	2992	11	0	0	0	0	logfile
✔	7TRE	26087	2023-08-13	2022-01-28	3.5	3.56	—	3.5	0.006	0.77	0.0	0.05	16.75	0.01	2.188	7.45	0.11	6.4	93.6	0.0	-0.75	0.77	0.77	2.23	3.5	0.004	0.59	0.0	0.03	17.07	0.00	2.219	7.53	0.53	4.1	95.9	0.0	0.60	0.73	0.78	0.83	2.14	13411	1086	4	224	0	0	0	logfile
✔	6o1D	0586	2023-08-12	2019-02-19	3.395	3.57	—	3.5	0.010	0.95	1.0	0.05	28.08	0.01	2.317	2.17	0.00	3.4	96.6	0.0	-4.72	0.79	0.87	4.13	3.5	0.003	0.57	0.0	0.03	27.97	0.00	2.190	7.68	0.16	2.3	97.7	0.0	0.33	0.54	0.79	0.88	2.73	11982	761	10	290	0	0	0	logfile
✔	7LPC	23476	2023-08-14	2021-02-11	3.06	2.87	2.85	3.1	0.013	1.23	0.0	0.21	20.11	0.00	2.188	5.69	0.00	2.0	98.0	0.0	0.83	0.64	0.80	2.87	3.1	0.002	0.44	0.0	0.03	14.73	0.00	2.212	6.03	0.07	2.4	97.6	0.0	2.33	0.57	0.66	0.84	2.71	15256	1816	8	0	40	0	0	logfile
✔	7WB0	32391	2023-08-11	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	18.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.003	0.58	0.0	0.03	19.27	0.00	2.184	8.33	0.00	4.3	95.6	0.1	0.39	1.06	0.71	0.77	1.00	10096	797	4	175	0	0	0	logfile
✔	8G8G	29850	2023-08-13	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.75	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.004	0.65	0.0	0.03	28.86	0.00	2.193	11.69	0.13	2.9	97.1	0.0	1.87	1.57	0.91	0.87	1.73	14558	931	11	348	0	0	0	logfile
✔	6oT5	20194	2023-08-22	2019-05-02	3.6	3.71	3.54	3.7	0.009	0.86	0.0	0.05	10.12	0.00	1.623	6.48	0.00	3.0	97.0	0.0	-2.73	0.65	0.76	3.18	3.7	0.005	0.60	0.0	0.03	13.54	0.00	1.951	6.51	0.21	5.2	94.8	0.0	0.20	0.83	0.68	0.79	2.71	33420	2444	8	0	52	0	15620	logfile
✔	7KDT	22829	2023-08-10	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.003	0.52	0.0	0.03	16.94	0.00	2.204	5.58	0.70	1.8	98.2	0.0	2.89	2.12	0.65	0.78	2.42	8064	505	2	0	0	0	4042	logfile
✔	7TRD	26086	2023-08-12	2022-01-28	3.3	3.39	—	3.4	0.004	0.64	0.0	0.04	16.47	0.00	2.206	7.50	0.12	4.3	95.7	0.0	-0.10	0.79	0.84	2.70	3.4	0.003	0.52	0.0	0.03	16.56	0.00	2.174	5.22	0.25	4.1	95.9	0.0	1.31	0.42	0.80	0.85	2.31	12240	934	3	224	0	0	0	logfile
✔	6ZBC	11150	2023-08-15	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	1.08	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.49	0.0	0.03	15.14	0.00	2.071	3.69	0.18	1.4	98.6	0.0	4.05	0.84	0.85	0.81	1.66	19534	1160	4	0	0	0	9902	logfile
✔	7CR1	30444	2023-08-10	2020-08-12	3.4	3.42	—	3.5	0.012	0.73	0.0	0.04	14.92	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.53	0.0	0.03	16.48	0.00	2.133	7.37	0.60	2.2	97.8	0.0	2.94	1.18	0.58	0.81	1.83	8220	1000	8	0	4	0	0	logfile

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