Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZiR	14738	2023-08-09	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.003	0.46	0.0	0.04	12.12	0.00	2.316	0.28	0.00	2.9	97.1	0.0	-3.83	1.03	0.50	0.93	7.96	2120	255	10	0	0	50	0	logfile
✔	7JG8	22314	2023-08-16	2020-07-18	3.3	2.35	3.37	3.3	0.009	1.50	0.0	0.20	7.20	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	2.2	0.003	0.83	0.0	0.08	5.44	0.00	2.294	0.43	0.00	8.9	91.0	0.1	-0.55	1.25	0.72	0.71	—	19573	4827	26	0	7	0	0	logfile
✔	6M54	30084	2023-08-22	2020-03-09	2.4	2.57	—	2.5	0.012	1.15	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.005	0.68	0.0	0.05	16.60	0.00	2.395	0.48	0.90	4.0	96.0	0.0	3.36	0.28	0.81	0.91	3.74	33382	4104	38	0	6	8	0	logfile
✔	8DXR	27774	2023-08-11	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.51	0.0	0.04	3.77	0.00	2.420	0.60	0.00	8.3	91.6	0.1	1.47	0.34	0.67	0.71	—	10435	2101	7	0	0	0	0	logfile
✔	8P34	17383	2023-08-09	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.50	0.0	0.05	13.21	0.00	2.693	0.69	0.00	4.3	95.7	0.0	-1.63	0.36	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	7NCA	12264	2023-08-11	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.49	0.0	0.05	12.94	0.00	2.433	0.77	0.39	2.7	97.3	0.0	-2.96	0.76	0.69	0.85	3.43	10428	732	12	0	0	0	5376	logfile
✔	7MJP	23881	2023-08-13	2021-04-20	4.2	4.40	—	4.3	0.008	1.11	0.0	0.07	6.51	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.60	0.0	0.05	4.85	0.00	2.276	0.87	0.00	6.8	93.2	0.0	-0.45	0.44	0.56	0.69	—	14163	2818	10	0	8	0	0	logfile
✔	5VLZ	8709	2023-08-24	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.002	0.73	0.0	0.00	4.75	0.00	2.276	0.95	0.00	4.8	95.2	0.0	-0.40	2.02	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile
✔	6M52	30083	2023-08-22	2020-03-09	2.6	2.82	—	2.8	0.009	0.94	0.0	0.06	15.32	0.00	2.390	0.63	0.00	4.7	95.3	0.0	-0.23	0.69	0.86	3.58	2.8	0.003	0.55	0.0	0.04	17.56	0.00	2.339	1.00	1.44	3.7	96.3	0.0	3.71	0.32	0.80	0.91	2.44	33382	4104	38	0	6	8	0	logfile
✔	8DXQ	27773	2023-08-11	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	3.9	0.004	0.64	0.0	0.04	5.26	0.00	2.238	1.07	0.00	12.2	87.7	0.0	0.18	0.28	0.64	0.69	—	10435	2101	7	0	0	0	0	logfile
✔	7QV5	14167	2023-08-09	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.35	0.0	0.06	12.33	0.00	2.576	1.08	0.00	1.0	99.0	0.0	-1.49	0.87	0.50	0.90	6.84	5562	342	27	0	18	0	2997	logfile
✔	6UVS	20915	2023-08-14	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	2.19	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.002	0.62	0.0	0.04	9.23	0.01	1.899	1.10	0.00	7.2	92.8	0.0	2.03	0.86	0.73	0.85	—	17040	1920	12	0	0	0	5976	logfile
✔	7JG6	22312	2023-08-15	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.90	0.0	0.00	5.83	0.00	2.226	1.17	0.00	11.4	88.6	0.0	-0.80	1.65	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	8CU8	26996	2023-08-23	2022-05-16	1.91	2.52	1.91	2.2	0.005	0.65	0.0	0.05	13.91	0.01	2.043	0.74	0.00	0.6	99.4	0.0	1.28	0.87	0.93	5.94	2.2	0.003	0.53	0.0	0.04	16.47	0.00	1.989	1.18	0.00	0.6	99.4	0.0	5.71	0.29	0.88	0.94	5.13	35271	4032	72	0	24	2271	0	logfile
✔	6QPi	4614	2023-08-09	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.53	0.0	0.04	5.28	0.00	2.448	1.19	0.00	2.6	97.4	0.0	1.11	0.59	0.41	0.64	—	2288	462	2	0	0	0	0	logfile
✔	8CPT	16785	2023-08-23	2023-03-03	1.79	1.72	1.81	1.8	0.004	0.72	0.0	0.05	15.65	0.01	2.157	1.26	0.49	1.0	99.0	0.0	2.30	0.80	0.85	8.36	1.8	0.003	0.58	0.0	0.04	16.07	0.00	2.206	1.20	0.65	1.8	98.2	0.0	4.32	0.33	0.81	0.87	8.14	36024	4152	72	0	38	1906	0	logfile
✔	7SQV	25396	2023-08-09	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	7SC0	25007	2023-08-12	2021-09-26	3.4	3.72	—	3.8	0.003	0.52	0.0	0.04	10.01	0.00	2.479	1.29	0.00	7.9	92.1	0.0	-2.84	0.69	0.81	2.75	3.8	0.003	0.59	0.0	0.04	14.15	0.00	2.371	1.37	0.54	9.0	90.2	0.8	-0.63	1.49	0.68	0.82	2.11	11638	1419	11	0	0	0	0	logfile
✔	7QV6	14168	2023-08-09	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.39	0.0	0.06	11.93	0.00	2.389	1.45	0.00	0.0	100.0	0.0	0.74	0.46	0.40	0.86	5.96	4842	306	18	0	0	0	2556	logfile
✔	6SH4	10193	2023-08-13	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.69	0.0	0.04	4.47	0.00	2.243	1.49	0.00	7.0	92.8	0.2	0.09	2.27	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile

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