Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5X1G	6701	2021-01-05	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	0.002	0.62	0.0	0.03	3.04	0.00	2.649	0.00	0.00	0.0	100.0	0.0	4.51	3.37	0.01	0.14	—	155	31	1	0	0	0	0	logfile
✔	6M52	30083	2021-01-07	2020-03-09	2.6	2.82	—	2.8	0.009	0.97	0.0	0.06	15.32	0.00	2.390	0.63	0.00	4.7	95.3	0.0	-0.23	0.69	0.86	3.58	2.8	0.005	0.69	0.0	0.04	15.58	0.00	2.342	0.54	0.00	4.6	95.4	0.0	3.23	0.38	0.78	0.89	2.86	33382	4104	38	0	6	8	0	logfile
✔	6M54	30084	2021-01-07	2020-03-09	2.4	2.57	—	2.5	0.012	1.16	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.003	0.62	0.0	0.04	16.75	0.00	2.345	0.80	0.17	4.0	96.0	0.0	3.90	0.33	0.81	0.89	3.74	33382	4104	38	0	6	8	0	logfile
✔	6iG9	9664	2021-01-06	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.65	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.002	0.64	0.0	0.04	4.43	0.00	2.303	1.11	0.00	7.1	92.9	0.0	1.99	1.65	0.86	0.78	—	17122	3386	1	0	0	0	0	logfile
✔	5VLZ	8709	2021-01-06	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.67	—	4.4	0.003	0.76	0.0	0.00	4.99	0.00	2.275	1.13	0.00	5.1	94.9	0.0	-0.94	2.07	0.81	0.77	—	96897	24179	181	0	0	0	0	logfile
✔	6QPi	4614	2021-01-05	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.004	0.57	0.0	0.04	5.55	0.00	2.452	1.49	0.00	2.8	97.2	0.0	0.26	1.21	0.42	0.63	—	2288	462	2	0	0	0	0	logfile
✔	6UVS	20915	2021-01-06	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	1.50	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.003	0.64	0.0	0.04	9.39	0.01	1.890	1.56	0.00	10.8	89.2	0.0	1.68	1.42	0.72	0.85	—	17040	1920	12	0	0	0	5976	logfile
✔	7JG8	22314	2021-01-06	2020-07-18	3.3	2.35	3.37	3.3	0.009	1.68	0.0	3.30	7.41	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.003	1.21	0.0	1.22	6.08	0.00	2.102	1.58	0.00	9.6	90.3	0.1	-1.40	1.32	0.71	0.69	—	19573	4827	26	0	7	0	0	logfile
✔	6RRS	4989	2021-01-06	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.80	0.0	0.00	6.71	0.00	2.212	1.98	0.00	13.7	86.3	0.0	-0.97	1.80	0.69	0.74	—	93060	23220	180	0	0	0	0	logfile
✔	5XB1	6714	2021-01-06	2017-03-15	3.0	3.16	2.84	3.1	0.007	0.71	0.0	0.05	10.82	0.00	2.173	4.34	0.00	2.0	98.0	0.0	-6.31	0.80	0.88	4.19	3.1	0.003	0.57	0.0	0.04	14.81	0.00	2.166	2.02	0.00	2.0	98.0	0.0	3.80	0.66	0.78	0.84	3.14	30847	3720	48	0	0	55	0	logfile
✔	6L3T	0825	2021-01-06	2019-10-15	2.34	2.41	2.27	2.4	0.011	1.07	0.0	0.05	16.88	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.002	0.59	0.0	0.03	16.26	0.00	1.939	2.29	1.51	0.6	99.4	0.0	2.93	3.48	0.67	0.85	4.16	19722	1206	18	0	6	204	9588	logfile
✔	6TQF	10550	2021-01-05	2019-12-16	3.5	3.81	—	3.7	0.009	0.98	0.0	0.06	15.82	0.01	2.092	2.95	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.002	0.57	0.0	0.04	13.86	0.00	2.054	2.29	0.00	2.8	97.2	0.0	-3.30	0.37	0.73	0.89	2.69	10426	1268	4	0	14	0	0	logfile
✔	6WX6	21951	2021-01-05	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.53	0.0	0.04	16.17	0.00	2.000	2.44	0.69	1.2	98.8	0.0	4.65	0.53	0.77	0.88	7.35	68332	4128	56	0	8	2420	32664	logfile
✔	6UXA	20931	2021-01-05	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	6.0	0.002	0.64	0.0	0.05	3.53	0.00	2.322	2.46	0.00	2.1	97.9	0.0	2.46	4.60	0.73	0.67	—	10344	2104	8	0	0	0	0	logfile
✔	6UFR	20759	2021-01-05	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.005	0.68	0.0	0.06	17.16	0.00	2.393	2.68	1.82	4.9	95.1	0.0	-0.91	0.98	0.50	0.87	5.00	4420	630	20	0	0	90	0	logfile
✔	6SAG	10130	2021-01-08	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.64	0.0	0.04	15.28	0.01	2.030	2.91	1.28	3.2	96.8	0.0	1.42	0.73	0.58	0.87	6.95	54080	6120	240	120	240	2840	0	logfile
✔	6TAS	10426	2021-01-05	2019-10-30	2.75	2.69	—	3.8	0.006	0.87	4.0	0.06	14.84	0.01	2.094	12.40	0.11	7.7	92.3	0.0	-1.28	0.53	0.75	2.28	3.8	0.003	0.57	0.0	0.04	14.70	0.00	2.188	2.92	0.22	4.3	95.7	0.0	0.69	0.59	0.57	0.78	2.17	8552	1044	10	0	2	0	0	logfile
✔	6UXB	20932	2021-01-05	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	6.0	0.002	0.59	0.0	0.05	3.18	0.00	2.362	2.92	0.00	2.6	97.4	0.0	2.73	2.34	0.77	0.74	—	10344	2104	8	0	0	0	0	logfile
✔	6i5A	4413	2021-01-05	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.005	0.65	0.0	0.04	15.99	0.01	2.314	2.93	1.48	1.3	98.7	0.0	1.77	1.23	0.30	0.87	4.26	1206	153	1	0	0	0	0	logfile
✔	6TSK	10564	2021-01-07	2019-12-20	2.3	2.36	—	2.3	0.012	1.54	24.0	0.11	16.57	0.02	1.535	1.51	2.42	2.9	97.0	0.1	-1.00	0.84	0.94	7.33	2.3	0.004	0.65	0.0	0.05	16.95	0.00	1.984	2.95	1.12	2.6	97.4	0.0	0.45	0.82	0.79	0.90	6.53	33632	4060	12	0	8	964	0	logfile

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