Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6M54	30084	2021-08-10	2020-03-09	2.4	2.57	—	2.5	0.012	1.16	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.004	0.67	0.0	0.04	16.63	0.00	2.383	0.46	0.54	4.1	95.9	0.0	3.38	0.30	0.81	0.91	3.69	33382	4104	38	0	6	8	0	logfile
✔	7NCA	12264	2021-08-08	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.49	0.0	0.05	13.31	0.00	2.284	0.58	0.00	2.1	97.9	0.0	-3.07	0.79	0.71	0.86	3.36	10428	732	12	0	0	0	5376	logfile
✔	7KPW	22990	2021-08-07	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.28	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.002	0.61	0.0	0.04	3.64	0.00	2.242	0.66	0.00	7.8	91.6	0.6	2.26	2.01	0.81	0.80	—	4313	865	1	0	0	0	0	logfile
✔	6M52	30083	2021-08-10	2020-03-09	2.6	2.82	—	2.8	0.009	0.97	0.0	0.06	15.32	0.00	2.390	0.63	0.00	4.7	95.3	0.0	-0.23	0.69	0.86	3.58	2.8	0.004	0.61	0.0	0.04	17.67	0.00	2.335	0.92	1.24	3.6	96.4	0.0	3.56	0.32	0.79	0.90	2.42	33382	4104	38	0	6	8	0	logfile
✔	6YW7	10960	2021-08-07	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	1.63	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.002	0.93	0.0	0.01	4.53	0.00	2.511	1.09	0.00	6.4	93.5	0.1	-3.67	6.36	0.85	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	6ZJA	11233	2021-08-11	2020-06-28	2.0	2.10	2.09	2.1	0.005	0.87	0.0	0.06	14.30	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.003	0.67	0.0	0.05	16.03	0.00	1.701	1.42	0.54	4.2	95.8	0.0	0.06	0.39	0.77	0.89	6.76	77951	9684	60	0	36	3191	0	logfile
✔	7JG8	22314	2021-08-09	2020-07-18	3.3	2.35	3.37	3.3	0.008	2.05	0.0	3.32	7.62	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.003	1.24	0.0	1.34	6.30	0.00	1.870	1.46	0.00	9.0	91.0	0.0	-0.96	1.31	0.72	0.70	—	19573	4827	26	0	7	0	0	logfile
✔	6iG9	9664	2021-08-08	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.65	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.3	0.002	0.65	0.0	0.04	4.56	0.00	2.266	1.47	0.00	7.7	92.3	0.0	1.81	1.67	0.89	0.82	—	17122	3386	1	0	0	0	0	logfile
✔	6QPi	4614	2021-08-07	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.52	0.0	0.04	5.17	0.00	2.483	1.49	0.00	2.8	97.2	0.0	0.96	1.21	0.42	0.63	—	2288	462	2	0	0	0	0	logfile
✔	6L3U	0826	2021-08-09	2019-10-15	2.53	2.59	2.48	2.6	0.012	0.95	0.0	0.05	17.70	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.003	0.58	0.0	0.03	16.90	0.00	1.958	1.55	1.31	0.4	99.6	0.0	2.52	0.94	0.64	0.85	2.97	19698	1206	18	0	12	174	9588	logfile
✔	6ZHX	11220	2021-08-09	2020-06-24	2.5	3.01	2.42	2.8	0.015	2.04	3.0	0.10	27.67	0.03	2.560	0.14	0.00	1.2	98.8	0.0	-0.83	0.80	0.81	5.74	2.7	0.006	0.62	0.0	0.04	28.61	0.00	2.157	1.81	0.48	1.2	98.8	0.0	2.73	1.06	0.87	0.89	4.62	21561	759	12	290	0	0	9607	logfile
✔	7KoD	22972	2021-08-10	2020-11-08	1.655	2.30	—	1.9	0.001	0.35	0.0	0.03	8.49	0.00	2.288	0.78	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.50	0.0	0.03	13.81	0.00	1.878	1.88	0.11	0.9	99.1	0.0	5.24	0.59	0.87	0.93	8.04	68186	4128	48	0	0	1727	32643	logfile
✔	6UVS	20915	2021-08-08	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	1.50	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.003	0.64	0.0	0.04	9.05	0.01	1.916	1.90	0.00	9.5	90.5	0.0	2.06	1.42	0.73	0.85	—	17040	1920	12	0	0	0	5976	logfile
✔	5VLZ	8709	2021-08-12	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.67	—	4.4	0.003	0.85	0.0	0.00	5.98	0.00	2.193	1.98	0.00	8.6	91.4	0.0	-1.66	1.69	0.83	0.79	—	96897	24179	181	0	0	0	0	logfile
✔	6RRS	4989	2021-08-12	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.7	0.004	0.79	0.0	0.00	6.65	0.00	2.206	1.98	0.00	12.9	87.1	0.0	-0.96	1.80	0.79	0.69	—	93060	23220	180	0	0	0	0	logfile
✔	6UXB	20932	2021-08-08	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	6.0	0.002	0.58	0.0	0.05	3.11	0.00	2.367	2.06	0.00	2.7	97.3	0.0	2.63	2.34	0.76	0.73	—	10344	2104	8	0	0	0	0	logfile
✔	7JG7	22313	2021-08-09	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.005	1.12	0.0	0.00	6.75	0.01	2.234	2.17	0.00	14.8	85.1	0.1	-1.45	1.66	0.73	0.71	—	19316	4818	20	0	11	0	0	logfile
✔	7K3W	22658	2021-08-11	2020-09-14	1.36	1.48	—	1.5	0.004	0.77	0.0	0.04	14.50	0.00	1.934	2.97	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.65	0.0	0.04	14.89	0.00	2.040	2.19	0.00	1.8	98.2	0.0	4.41	0.13	0.74	0.80	9.20	39086	4128	72	0	382	2680	0	logfile
✔	7DZW	30915	2021-08-08	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	1.99	0.00	5.1	93.3	1.6	-1.27	0.44	0.26	—	3.3	0.003	0.78	0.0	0.00	4.55	0.00	2.226	2.34	0.00	11.4	88.5	0.1	-1.82	2.18	0.76	0.74	—	13452	3363	3	0	0	0	0	logfile
✔	6UFR	20759	2021-08-07	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.005	0.71	0.0	0.06	17.11	0.00	2.381	2.35	2.27	4.9	95.1	0.0	-0.92	0.98	0.52	0.89	5.09	4420	630	20	0	0	90	0	logfile

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