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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7ZiR | 14738 | 2023-08-09 | 2022-04-08 | 2.5 | 2.51 | 2.04 | 2.7 | 0.002 | 0.34 | 0.0 | 0.03 | 9.02 | 0.00 | 2.317 | 1.65 | 0.00 | 2.0 | 98.0 | 0.0 | -3.82 | 0.48 | 0.90 | 7.46 | 2.7 | 0.003 | 0.46 | 0.0 | 0.04 | 12.12 | 0.00 | 2.316 | 0.28 | 0.00 | 2.9 | 97.1 | 0.0 | -3.83 | 1.03 | 0.50 | 0.93 | 7.96 | 2120 | 255 | 10 | 0 | 0 | 50 | 0 | logfile |
✔ | 7JG8 | 22314 | 2023-08-16 | 2020-07-18 | 3.3 | 2.35 | 3.37 | 3.3 | 0.009 | 1.50 | 0.0 | 0.20 | 7.20 | 0.01 | 2.424 | 0.51 | 0.00 | 3.2 | 96.6 | 0.2 | -1.30 | 0.62 | 0.55 | — | 2.2 | 0.003 | 0.83 | 0.0 | 0.08 | 5.44 | 0.00 | 2.294 | 0.43 | 0.00 | 8.9 | 91.0 | 0.1 | -0.55 | 1.25 | 0.72 | 0.71 | — | 19573 | 4827 | 26 | 0 | 7 | 0 | 0 | logfile |
✔ | 6M54 | 30084 | 2023-08-22 | 2020-03-09 | 2.4 | 2.57 | — | 2.5 | 0.012 | 1.15 | 0.0 | 0.07 | 14.96 | 0.01 | 2.591 | 0.71 | 0.00 | 4.1 | 95.9 | 0.0 | -0.37 | 0.69 | 0.85 | 5.34 | 2.5 | 0.005 | 0.68 | 0.0 | 0.05 | 16.60 | 0.00 | 2.395 | 0.48 | 0.90 | 4.0 | 96.0 | 0.0 | 3.36 | 0.28 | 0.81 | 0.91 | 3.74 | 33382 | 4104 | 38 | 0 | 6 | 8 | 0 | logfile |
✔ | 8DXR | 27774 | 2023-08-11 | 2022-08-02 | 4.0 | 4.31 | 4.01 | 4.2 | 0.004 | 0.81 | 0.0 | 0.04 | 5.27 | 0.00 | 2.255 | 1.54 | 0.00 | 11.6 | 88.3 | 0.1 | -0.80 | 0.67 | 0.71 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 3.77 | 0.00 | 2.420 | 0.60 | 0.00 | 8.3 | 91.6 | 0.1 | 1.47 | 0.34 | 0.67 | 0.71 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P34 | 17383 | 2023-08-09 | 2023-05-17 | 2.61 | 2.80 | 2.24 | 2.8 | 0.009 | 1.32 | 0.0 | 0.08 | 11.05 | 0.01 | 2.651 | 0.69 | 0.00 | 5.4 | 94.6 | 0.0 | -1.84 | 0.29 | 0.90 | 7.34 | 2.8 | 0.002 | 0.50 | 0.0 | 0.05 | 13.21 | 0.00 | 2.693 | 0.69 | 0.00 | 4.3 | 95.7 | 0.0 | -1.63 | 0.36 | 0.28 | 0.88 | 6.21 | 711 | 94 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NCA | 12264 | 2023-08-11 | 2021-01-28 | 3.47 | 3.58 | 3.04 | 3.6 | 0.012 | 2.04 | 0.0 | 0.08 | 10.64 | 0.01 | 2.645 | 0.00 | 0.19 | 5.5 | 94.5 | 0.0 | -2.04 | 0.73 | 0.85 | 4.45 | 3.7 | 0.002 | 0.49 | 0.0 | 0.05 | 12.94 | 0.00 | 2.433 | 0.77 | 0.39 | 2.7 | 97.3 | 0.0 | -2.96 | 0.76 | 0.69 | 0.85 | 3.43 | 10428 | 732 | 12 | 0 | 0 | 0 | 5376 | logfile |
✔ | 7MJP | 23881 | 2023-08-13 | 2021-04-20 | 4.2 | 4.40 | — | 4.3 | 0.008 | 1.11 | 0.0 | 0.07 | 6.51 | 0.01 | 1.477 | 2.76 | 0.00 | 9.1 | 90.9 | 0.0 | -1.16 | 0.51 | 0.65 | — | 4.4 | 0.002 | 0.60 | 0.0 | 0.05 | 4.85 | 0.00 | 2.276 | 0.87 | 0.00 | 6.8 | 93.2 | 0.0 | -0.45 | 0.44 | 0.56 | 0.69 | — | 14163 | 2818 | 10 | 0 | 8 | 0 | 0 | logfile |
✔ | 5VLZ | 8709 | 2023-08-24 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | 4.4 | 0.002 | 0.73 | 0.0 | 0.00 | 4.75 | 0.00 | 2.276 | 0.95 | 0.00 | 4.8 | 95.2 | 0.0 | -0.40 | 2.02 | 0.83 | 0.78 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M52 | 30083 | 2023-08-22 | 2020-03-09 | 2.6 | 2.82 | — | 2.8 | 0.009 | 0.94 | 0.0 | 0.06 | 15.32 | 0.00 | 2.390 | 0.63 | 0.00 | 4.7 | 95.3 | 0.0 | -0.23 | 0.69 | 0.86 | 3.58 | 2.8 | 0.003 | 0.55 | 0.0 | 0.04 | 17.56 | 0.00 | 2.339 | 1.00 | 1.44 | 3.7 | 96.3 | 0.0 | 3.71 | 0.32 | 0.80 | 0.91 | 2.44 | 33382 | 4104 | 38 | 0 | 6 | 8 | 0 | logfile |
✔ | 8DXQ | 27773 | 2023-08-11 | 2022-08-02 | 3.8 | 4.02 | 3.81 | 3.9 | 0.002 | 0.52 | 0.0 | 0.04 | 4.66 | 0.00 | 2.301 | 1.14 | 0.00 | 10.1 | 89.9 | 0.0 | 0.26 | 0.65 | 0.71 | — | 3.9 | 0.004 | 0.64 | 0.0 | 0.04 | 5.26 | 0.00 | 2.238 | 1.07 | 0.00 | 12.2 | 87.7 | 0.0 | 0.18 | 0.28 | 0.64 | 0.69 | — | 10435 | 2101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QV5 | 14167 | 2023-08-09 | 2022-01-19 | 3.0 | 3.03 | 1.88 | 3.0 | 0.010 | 0.44 | 0.0 | 0.06 | 9.44 | 0.00 | 2.689 | 1.08 | 0.00 | 6.2 | 93.8 | 0.0 | -2.64 | 0.46 | 0.86 | 7.89 | 3.1 | 0.002 | 0.35 | 0.0 | 0.06 | 12.33 | 0.00 | 2.576 | 1.08 | 0.00 | 1.0 | 99.0 | 0.0 | -1.49 | 0.87 | 0.50 | 0.90 | 6.84 | 5562 | 342 | 27 | 0 | 18 | 0 | 2997 | logfile |
✔ | 6UVS | 20915 | 2023-08-14 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.002 | 0.62 | 0.0 | 0.04 | 9.23 | 0.01 | 1.899 | 1.10 | 0.00 | 7.2 | 92.8 | 0.0 | 2.03 | 0.86 | 0.73 | 0.85 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 7JG6 | 22312 | 2023-08-15 | 2020-07-18 | 3.7 | 2.39 | 3.79 | 2.2 | 0.008 | 1.40 | 0.0 | 0.00 | 6.55 | 0.01 | 2.433 | 0.00 | 0.00 | 2.9 | 97.0 | 0.1 | -0.59 | 0.62 | 0.54 | — | 2.3 | 0.004 | 0.90 | 0.0 | 0.00 | 5.83 | 0.00 | 2.226 | 1.17 | 0.00 | 11.4 | 88.6 | 0.0 | -0.80 | 1.65 | 0.71 | 0.69 | — | 19320 | 4819 | 20 | 0 | 11 | 0 | 0 | logfile |
✔ | 8CU8 | 26996 | 2023-08-23 | 2022-05-16 | 1.91 | 2.52 | 1.91 | 2.2 | 0.005 | 0.65 | 0.0 | 0.05 | 13.91 | 0.01 | 2.043 | 0.74 | 0.00 | 0.6 | 99.4 | 0.0 | 1.28 | 0.87 | 0.93 | 5.94 | 2.2 | 0.003 | 0.53 | 0.0 | 0.04 | 16.47 | 0.00 | 1.989 | 1.18 | 0.00 | 0.6 | 99.4 | 0.0 | 5.71 | 0.29 | 0.88 | 0.94 | 5.13 | 35271 | 4032 | 72 | 0 | 24 | 2271 | 0 | logfile |
✔ | 6QPi | 4614 | 2023-08-09 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 5.28 | 0.00 | 2.448 | 1.19 | 0.00 | 2.6 | 97.4 | 0.0 | 1.11 | 0.59 | 0.41 | 0.64 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CPT | 16785 | 2023-08-23 | 2023-03-03 | 1.79 | 1.72 | 1.81 | 1.8 | 0.004 | 0.72 | 0.0 | 0.05 | 15.65 | 0.01 | 2.157 | 1.26 | 0.49 | 1.0 | 99.0 | 0.0 | 2.30 | 0.80 | 0.85 | 8.36 | 1.8 | 0.003 | 0.58 | 0.0 | 0.04 | 16.07 | 0.00 | 2.206 | 1.20 | 0.65 | 1.8 | 98.2 | 0.0 | 4.32 | 0.33 | 0.81 | 0.87 | 8.14 | 36024 | 4152 | 72 | 0 | 38 | 1906 | 0 | logfile |
✔ | 7SQV | 25396 | 2023-08-09 | 2021-11-06 | 2.3 | 2.95 | 2.29 | 2.8 | 0.001 | 0.38 | 0.0 | 0.04 | 16.08 | 0.00 | 2.314 | 1.47 | 0.63 | 0.7 | 99.3 | 0.0 | 1.86 | 0.76 | 0.88 | 3.59 | 2.8 | 0.003 | 0.47 | 0.0 | 0.04 | 16.30 | 0.00 | 2.295 | 1.36 | 1.67 | 1.1 | 98.9 | 0.0 | 1.71 | 1.99 | 0.77 | 0.90 | 3.84 | 4471 | 573 | 5 | 0 | 0 | 7 | 0 | logfile |
✔ | 7SC0 | 25007 | 2023-08-12 | 2021-09-26 | 3.4 | 3.72 | — | 3.8 | 0.003 | 0.52 | 0.0 | 0.04 | 10.01 | 0.00 | 2.479 | 1.29 | 0.00 | 7.9 | 92.1 | 0.0 | -2.84 | 0.69 | 0.81 | 2.75 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 14.15 | 0.00 | 2.371 | 1.37 | 0.54 | 9.0 | 90.2 | 0.8 | -0.63 | 1.49 | 0.68 | 0.82 | 2.11 | 11638 | 1419 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QV6 | 14168 | 2023-08-09 | 2022-01-19 | 3.5 | 3.33 | 3.32 | 3.5 | 0.011 | 0.59 | 0.0 | 0.05 | 11.56 | 0.00 | 2.480 | 1.86 | 0.00 | 1.1 | 98.9 | 0.0 | -1.85 | 0.39 | 0.86 | 5.72 | 3.5 | 0.002 | 0.39 | 0.0 | 0.06 | 11.93 | 0.00 | 2.389 | 1.45 | 0.00 | 0.0 | 100.0 | 0.0 | 0.74 | 0.46 | 0.40 | 0.86 | 5.96 | 4842 | 306 | 18 | 0 | 0 | 0 | 2556 | logfile |
✔ | 6SH4 | 10193 | 2023-08-13 | 2019-08-05 | 4.4 | 4.48 | — | 4.3 | 0.005 | 1.01 | 0.0 | 0.07 | 5.13 | 0.00 | 2.405 | 2.99 | 0.00 | 6.8 | 92.4 | 0.8 | -2.94 | 0.72 | 0.77 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 4.47 | 0.00 | 2.243 | 1.49 | 0.00 | 7.0 | 92.8 | 0.2 | 0.09 | 2.27 | 0.74 | 0.83 | — | 12957 | 2632 | 7 | 0 | 0 | 0 | 0 | logfile |