Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6M54	30084	2022-07-06	2020-03-09	2.4	2.57	—	2.5	0.012	1.15	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.004	0.60	0.0	0.04	17.20	0.00	2.485	0.55	0.25	4.1	95.9	0.0	4.02	0.33	0.81	0.90	3.68	33382	4104	38	0	6	8	0	logfile
✔	7JG6	22312	2022-07-04	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.003	0.91	0.0	0.00	5.94	0.00	2.230	1.09	0.00	10.6	89.3	0.1	-1.07	1.66	0.70	0.68	—	19320	4819	20	0	11	0	0	logfile
✔	5VLZ	8709	2022-07-06	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.003	0.81	0.0	0.00	5.63	0.00	2.281	1.18	0.00	6.0	94.0	0.0	-1.57	1.65	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile
✔	6UVS	20915	2022-07-04	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	2.19	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.003	0.65	0.0	0.04	9.41	0.01	1.893	1.21	0.00	10.5	89.5	0.0	1.45	0.87	0.73	0.86	—	17040	1920	12	0	0	0	5976	logfile
✔	7MJP	23881	2022-07-04	2021-04-20	4.2	4.40	—	4.3	0.007	1.11	0.0	0.07	7.09	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.62	0.0	0.05	5.79	0.00	2.276	1.31	0.00	9.5	90.5	0.0	-0.73	0.44	0.57	0.70	—	14163	2818	10	0	8	0	0	logfile
✔	7NCA	12264	2022-07-03	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.53	0.0	0.05	13.06	0.00	2.393	1.34	0.19	3.8	96.2	0.0	-3.13	0.76	0.70	0.85	3.61	10428	732	12	0	0	0	5376	logfile
✔	7SC0	25007	2022-07-03	2021-09-26	3.4	3.72	—	3.8	0.003	0.52	0.0	0.04	10.01	0.00	2.479	1.29	0.00	7.9	92.1	0.0	-2.84	0.69	0.81	2.75	3.8	0.003	0.58	0.0	0.04	14.27	0.00	2.369	1.37	0.70	8.4	91.6	0.1	-0.65	1.49	0.70	0.82	2.18	11638	1419	11	0	0	0	0	logfile
✔	7VQQ	32092	2022-07-02	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.49	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.72	0.0	0.04	12.71	0.00	2.270	1.38	0.91	4.1	95.9	0.0	-4.95	0.28	0.48	0.87	4.50	1968	273	3	0	0	0	0	logfile
✔	6QPi	4614	2022-07-02	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	6M52	30083	2022-07-06	2020-03-09	2.6	2.82	—	2.8	0.009	0.94	0.0	0.06	15.32	0.00	2.390	1.00	0.00	4.7	95.3	0.0	-0.23	0.69	0.86	3.58	2.8	0.004	0.60	0.0	0.04	17.82	0.00	2.352	1.54	1.44	3.6	96.4	0.0	3.73	0.34	0.79	0.91	2.49	33382	4104	38	0	6	8	0	logfile
✔	7JG8	22314	2022-07-04	2020-07-18	3.3	2.35	3.38	3.3	0.009	1.50	0.0	0.20	7.20	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.002	0.82	0.0	0.08	5.33	0.00	2.297	1.62	0.00	7.7	92.2	0.1	-1.26	1.28	0.72	0.70	—	19573	4827	26	0	7	0	0	logfile
✔	7QL2	14061	2022-07-02	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.4	0.005	0.63	0.0	0.05	12.52	0.01	2.550	1.75	2.96	9.0	91.0	0.0	-3.01	0.80	0.25	0.74	5.06	2286	150	3	0	0	0	1179	logfile
✔	6ZJA	11233	2022-07-05	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.19	0.01	1.974	0.84	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.004	0.72	0.0	0.05	15.95	0.01	1.820	1.85	0.56	4.3	95.7	0.0	0.02	0.39	0.78	0.89	6.77	77951	9684	60	0	36	3191	0	logfile
✔	6RRS	4989	2022-07-06	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.88	0.0	0.00	7.55	0.00	2.175	1.89	0.00	14.6	85.4	0.0	-1.44	2.05	0.80	0.71	—	93060	23220	180	0	0	0	0	logfile
✔	6ZHX	11220	2022-07-05	2020-06-24	2.5	3.01	2.42	2.8	0.015	2.04	3.0	0.10	27.67	0.03	2.560	0.23	0.00	1.2	98.8	0.0	-0.83	0.80	0.81	5.74	2.7	0.006	0.64	0.0	0.05	28.64	0.00	2.257	2.00	0.95	1.2	98.8	0.0	2.59	1.04	0.86	0.89	4.67	21561	759	12	290	0	0	9607	logfile
✔	7RXB	24727	2022-07-03	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	14.60	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.002	0.53	0.0	0.04	14.50	0.00	2.378	2.10	0.25	5.3	94.7	0.0	-0.04	0.27	0.65	0.89	3.11	8506	1096	4	0	8	0	0	logfile
✔	7R5o	14332	2022-07-07	2022-02-11	1.58	1.60	1.62	1.6	0.020	2.16	73.0	0.21	13.63	0.01	1.924	5.51	0.62	1.2	98.8	0.0	1.54	0.84	0.91	8.10	1.6	0.002	0.57	0.0	0.04	14.14	0.00	2.142	2.12	0.00	1.8	98.2	0.0	5.16	0.31	0.87	0.91	8.29	38520	4152	72	0	24	3384	0	logfile
✔	7K3V	22657	2022-07-07	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	14.68	0.00	0.211	3.06	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.76	0.0	0.04	14.89	0.01	1.975	2.14	0.00	1.2	98.8	0.0	3.84	0.31	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	6iG9	9664	2022-07-04	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.003	0.66	0.0	0.04	5.13	0.00	2.207	2.18	0.00	8.6	91.4	0.0	0.94	1.55	0.84	0.80	—	17122	3386	1	0	0	0	0	logfile
✔	7RRP	24665	2022-07-04	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	3.20	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.004	0.72	0.0	0.04	14.38	0.01	2.040	2.21	0.00	1.8	98.2	0.0	3.84	0.41	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile

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