Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6M52	30083	2021-05-06	2020-03-09	2.6	2.82	—	2.8	0.009	0.97	0.0	0.06	15.32	0.00	2.390	0.63	0.00	4.7	95.3	0.0	-0.23	0.69	0.86	3.58	2.8	0.005	0.66	0.0	0.04	17.59	0.00	2.342	0.77	0.90	4.2	95.8	0.0	3.40	0.33	0.75	0.88	2.51	33382	4104	38	0	6	8	0	logfile
✔	6M54	30084	2021-05-06	2020-03-09	2.4	2.57	—	2.5	0.012	1.16	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.004	0.68	0.0	0.04	16.69	0.00	2.353	0.97	0.48	3.8	96.2	0.0	3.75	0.32	0.75	0.87	3.59	33382	4104	38	0	6	8	0	logfile
✔	7NCA	12264	2021-05-03	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.004	0.57	0.0	0.05	13.10	0.00	2.425	1.25	0.39	5.9	94.1	0.0	-3.37	0.78	0.70	0.85	3.55	10428	732	12	0	0	0	5376	logfile
✔	6QPi	4614	2021-05-03	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.004	0.57	0.0	0.04	5.67	0.00	2.438	1.49	0.00	2.8	97.2	0.0	0.06	1.21	0.41	0.64	—	2288	462	2	0	0	0	0	logfile
✔	6SH4	10193	2021-05-04	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.75	0.0	0.04	4.93	0.00	2.224	1.65	0.00	8.9	90.8	0.3	-0.26	2.30	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	6iG9	9664	2021-05-04	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.65	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.3	0.002	0.66	0.0	0.04	4.85	0.00	2.236	1.71	0.00	7.8	92.2	0.0	1.42	1.68	0.85	0.80	—	17122	3386	1	0	0	0	0	logfile
✔	6RRS	4989	2021-05-05	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.003	0.71	0.0	0.00	5.51	0.00	2.264	1.84	0.00	10.9	89.1	0.0	-0.49	1.78	0.72	0.75	—	93060	23220	180	0	0	0	0	logfile
✔	6UVS	20915	2021-05-04	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	1.50	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.004	0.66	0.0	0.04	9.52	0.01	1.881	1.85	0.00	11.6	88.3	0.1	0.98	1.42	0.71	0.83	—	17040	1920	12	0	0	0	5976	logfile
✔	7KoD	22972	2021-05-03	2020-11-08	1.655	2.30	—	1.9	0.001	0.35	0.0	0.03	8.49	0.00	2.288	0.78	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.51	0.0	0.04	13.87	0.00	1.855	1.87	0.08	0.9	99.1	0.0	5.18	0.59	0.88	0.94	8.00	68186	4128	48	0	0	1727	32643	logfile
✔	6ZHX	11220	2021-05-04	2020-06-24	2.5	3.01	2.42	2.8	0.015	2.04	3.0	0.10	27.67	0.03	2.560	0.14	0.00	1.2	98.8	0.0	-0.83	0.80	0.81	5.74	2.7	0.005	0.62	0.0	0.04	28.54	0.00	2.191	2.04	0.48	1.4	98.6	0.0	2.82	1.05	0.84	0.87	4.66	21561	759	12	290	0	0	9607	logfile
✔	6L3U	0826	2021-05-04	2019-10-15	2.53	2.59	2.48	2.6	0.012	0.95	0.0	0.05	17.90	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.53	0.0	0.03	16.73	0.00	1.969	2.04	1.31	0.5	99.5	0.0	2.78	0.94	0.62	0.84	3.01	19698	1206	18	0	12	174	9588	logfile
✔	6ZB5	11145	2021-05-05	2020-06-07	2.85	2.93	2.86	2.9	0.009	0.76	1.0	0.06	17.24	0.01	1.985	2.77	3.76	7.6	92.4	0.0	-3.22	0.77	0.85	3.59	2.9	0.004	0.64	0.0	0.05	17.66	0.01	2.174	2.19	3.53	6.0	94.0	0.0	-1.12	1.13	0.77	0.86	3.45	24499	3096	9	0	29	0	0	logfile
✔	6YNV	10857	2021-05-03	2020-04-14	2.8	3.33	2.74	3.2	0.099	2.07	0.0	0.05	17.51	0.01	1.398	5.80	1.67	6.0	94.0	0.0	-3.24	0.64	0.88	5.38	3.2	0.003	0.60	0.0	0.04	16.71	0.00	2.319	2.23	0.28	5.1	94.9	0.0	0.41	1.43	0.62	0.88	5.06	6724	417	1	0	1	0	3285	logfile
✔	6UXB	20932	2021-05-03	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	6.0	0.002	0.58	0.0	0.05	2.95	0.00	2.400	2.26	0.00	1.9	98.1	0.0	2.93	2.33	0.76	0.72	—	10344	2104	8	0	0	0	0	logfile
✔	6WX6	21951	2021-05-03	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.54	0.0	0.04	16.22	0.00	2.001	2.31	0.69	1.2	98.8	0.0	4.73	0.53	0.77	0.88	7.36	68332	4128	56	0	8	2420	32664	logfile
✔	7K3V	22657	2021-05-06	2020-09-14	1.34	1.44	—	1.4	0.005	0.80	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.004	0.80	0.0	0.04	14.89	0.01	2.009	2.36	0.00	1.2	98.8	0.0	4.04	0.21	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7JG6	22312	2021-05-04	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.005	1.06	0.0	0.00	6.91	0.01	2.157	2.45	0.00	13.7	86.2	0.1	-1.84	1.69	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	6UFR	20759	2021-05-03	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.005	0.68	0.0	0.06	17.06	0.00	2.402	2.46	2.27	4.9	95.1	0.0	-0.89	0.98	0.47	0.86	5.00	4420	630	20	0	0	90	0	logfile
✔	6TQF	10550	2021-05-03	2019-12-16	3.5	3.81	—	3.7	0.009	0.98	0.0	0.06	15.82	0.01	2.092	2.95	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.004	0.61	0.0	0.04	15.93	0.00	1.979	2.48	0.09	3.6	96.4	0.0	-3.82	0.38	0.73	0.90	2.78	10426	1268	4	0	14	0	0	logfile
✔	5XB1	6714	2021-05-05	2017-03-15	3.0	3.16	2.84	3.1	0.007	0.71	0.0	0.05	10.82	0.00	2.173	4.34	0.00	2.0	98.0	0.0	-6.31	0.80	0.88	4.19	3.1	0.003	0.54	0.0	0.03	18.57	0.00	2.143	2.53	3.39	2.2	97.8	0.0	3.80	0.70	0.77	0.86	2.95	30847	3720	48	0	0	55	0	logfile

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