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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6M54 | 30084 | 2022-07-06 | 2020-03-09 | 2.4 | 2.57 | — | 2.5 | 0.012 | 1.15 | 0.0 | 0.07 | 14.96 | 0.01 | 2.591 | 0.71 | 0.00 | 4.1 | 95.9 | 0.0 | -0.37 | 0.69 | 0.85 | 5.34 | 2.5 | 0.004 | 0.60 | 0.0 | 0.04 | 17.20 | 0.00 | 2.485 | 0.55 | 0.25 | 4.1 | 95.9 | 0.0 | 4.02 | 0.33 | 0.81 | 0.90 | 3.68 | 33382 | 4104 | 38 | 0 | 6 | 8 | 0 | logfile |
✔ | 7JG6 | 22312 | 2022-07-04 | 2020-07-18 | 3.7 | 2.39 | 3.79 | 2.2 | 0.008 | 1.40 | 0.0 | 0.00 | 6.55 | 0.01 | 2.433 | 0.00 | 0.00 | 2.9 | 97.0 | 0.1 | -0.59 | 0.62 | 0.54 | — | 2.3 | 0.003 | 0.91 | 0.0 | 0.00 | 5.94 | 0.00 | 2.230 | 1.09 | 0.00 | 10.6 | 89.3 | 0.1 | -1.07 | 1.66 | 0.70 | 0.68 | — | 19320 | 4819 | 20 | 0 | 11 | 0 | 0 | logfile |
✔ | 5VLZ | 8709 | 2022-07-06 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | 4.4 | 0.003 | 0.81 | 0.0 | 0.00 | 5.63 | 0.00 | 2.281 | 1.18 | 0.00 | 6.0 | 94.0 | 0.0 | -1.57 | 1.65 | 0.83 | 0.78 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UVS | 20915 | 2022-07-04 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 9.41 | 0.01 | 1.893 | 1.21 | 0.00 | 10.5 | 89.5 | 0.0 | 1.45 | 0.87 | 0.73 | 0.86 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 7MJP | 23881 | 2022-07-04 | 2021-04-20 | 4.2 | 4.40 | — | 4.3 | 0.007 | 1.11 | 0.0 | 0.07 | 7.09 | 0.01 | 1.477 | 2.76 | 0.00 | 9.1 | 90.9 | 0.0 | -1.16 | 0.51 | 0.65 | — | 4.4 | 0.002 | 0.62 | 0.0 | 0.05 | 5.79 | 0.00 | 2.276 | 1.31 | 0.00 | 9.5 | 90.5 | 0.0 | -0.73 | 0.44 | 0.57 | 0.70 | — | 14163 | 2818 | 10 | 0 | 8 | 0 | 0 | logfile |
✔ | 7NCA | 12264 | 2022-07-03 | 2021-01-28 | 3.47 | 3.58 | 3.04 | 3.6 | 0.012 | 2.04 | 0.0 | 0.08 | 10.64 | 0.01 | 2.645 | 0.00 | 0.19 | 5.5 | 94.5 | 0.0 | -2.04 | 0.73 | 0.85 | 4.45 | 3.7 | 0.002 | 0.53 | 0.0 | 0.05 | 13.06 | 0.00 | 2.393 | 1.34 | 0.19 | 3.8 | 96.2 | 0.0 | -3.13 | 0.76 | 0.70 | 0.85 | 3.61 | 10428 | 732 | 12 | 0 | 0 | 0 | 5376 | logfile |
✔ | 7SC0 | 25007 | 2022-07-03 | 2021-09-26 | 3.4 | 3.72 | — | 3.8 | 0.003 | 0.52 | 0.0 | 0.04 | 10.01 | 0.00 | 2.479 | 1.29 | 0.00 | 7.9 | 92.1 | 0.0 | -2.84 | 0.69 | 0.81 | 2.75 | 3.8 | 0.003 | 0.58 | 0.0 | 0.04 | 14.27 | 0.00 | 2.369 | 1.37 | 0.70 | 8.4 | 91.6 | 0.1 | -0.65 | 1.49 | 0.70 | 0.82 | 2.18 | 11638 | 1419 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VQQ | 32092 | 2022-07-02 | 2021-10-20 | 2.9 | 2.61 | — | 3.1 | 0.009 | 0.85 | 0.0 | 0.05 | 11.51 | 0.01 | 2.233 | 2.49 | 0.00 | 12.4 | 87.6 | 0.0 | -6.09 | 0.47 | 0.86 | 4.62 | 3.1 | 0.004 | 0.72 | 0.0 | 0.04 | 12.71 | 0.00 | 2.270 | 1.38 | 0.91 | 4.1 | 95.9 | 0.0 | -4.95 | 0.28 | 0.48 | 0.87 | 4.50 | 1968 | 273 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QPi | 4614 | 2022-07-02 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.002 | 0.44 | 0.0 | 0.04 | 4.28 | 0.00 | 2.462 | 1.49 | 0.00 | 2.8 | 97.2 | 0.0 | 2.25 | 1.20 | 0.41 | 0.62 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M52 | 30083 | 2022-07-06 | 2020-03-09 | 2.6 | 2.82 | — | 2.8 | 0.009 | 0.94 | 0.0 | 0.06 | 15.32 | 0.00 | 2.390 | 1.00 | 0.00 | 4.7 | 95.3 | 0.0 | -0.23 | 0.69 | 0.86 | 3.58 | 2.8 | 0.004 | 0.60 | 0.0 | 0.04 | 17.82 | 0.00 | 2.352 | 1.54 | 1.44 | 3.6 | 96.4 | 0.0 | 3.73 | 0.34 | 0.79 | 0.91 | 2.49 | 33382 | 4104 | 38 | 0 | 6 | 8 | 0 | logfile |
✔ | 7JG8 | 22314 | 2022-07-04 | 2020-07-18 | 3.3 | 2.35 | 3.38 | 3.3 | 0.009 | 1.50 | 0.0 | 0.20 | 7.20 | 0.01 | 2.424 | 0.51 | 0.00 | 3.2 | 96.6 | 0.2 | -1.30 | 0.62 | 0.55 | — | 3.4 | 0.002 | 0.82 | 0.0 | 0.08 | 5.33 | 0.00 | 2.297 | 1.62 | 0.00 | 7.7 | 92.2 | 0.1 | -1.26 | 1.28 | 0.72 | 0.70 | — | 19573 | 4827 | 26 | 0 | 7 | 0 | 0 | logfile |
✔ | 7QL2 | 14061 | 2022-07-02 | 2021-12-19 | 2.95 | 2.96 | 2.65 | 3.1 | 0.010 | 2.11 | 2.0 | 0.11 | 10.98 | 0.01 | 2.674 | 0.00 | 0.00 | 7.6 | 92.4 | 0.0 | -2.82 | 0.30 | 0.74 | 4.50 | 3.4 | 0.005 | 0.63 | 0.0 | 0.05 | 12.52 | 0.01 | 2.550 | 1.75 | 2.96 | 9.0 | 91.0 | 0.0 | -3.01 | 0.80 | 0.25 | 0.74 | 5.06 | 2286 | 150 | 3 | 0 | 0 | 0 | 1179 | logfile |
✔ | 6ZJA | 11233 | 2022-07-05 | 2020-06-28 | 2.0 | 2.10 | 2.09 | 2.1 | 0.006 | 0.86 | 0.0 | 0.06 | 14.19 | 0.01 | 1.974 | 0.84 | 1.37 | 4.1 | 95.9 | 0.0 | -0.40 | 0.79 | 0.87 | 6.97 | 2.1 | 0.004 | 0.72 | 0.0 | 0.05 | 15.95 | 0.01 | 1.820 | 1.85 | 0.56 | 4.3 | 95.7 | 0.0 | 0.02 | 0.39 | 0.78 | 0.89 | 6.77 | 77951 | 9684 | 60 | 0 | 36 | 3191 | 0 | logfile |
✔ | 6RRS | 4989 | 2022-07-06 | 2019-05-20 | 3.9 | 4.30 | 4.41 | 3.8 | 0.013 | 2.10 | 0.0 | 0.00 | 2.04 | 0.01 | 2.364 | 0.79 | 0.00 | 3.9 | 95.3 | 0.8 | -0.85 | 0.56 | 0.64 | — | 3.8 | 0.004 | 0.88 | 0.0 | 0.00 | 7.55 | 0.00 | 2.175 | 1.89 | 0.00 | 14.6 | 85.4 | 0.0 | -1.44 | 2.05 | 0.80 | 0.71 | — | 93060 | 23220 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZHX | 11220 | 2022-07-05 | 2020-06-24 | 2.5 | 3.01 | 2.42 | 2.8 | 0.015 | 2.04 | 3.0 | 0.10 | 27.67 | 0.03 | 2.560 | 0.23 | 0.00 | 1.2 | 98.8 | 0.0 | -0.83 | 0.80 | 0.81 | 5.74 | 2.7 | 0.006 | 0.64 | 0.0 | 0.05 | 28.64 | 0.00 | 2.257 | 2.00 | 0.95 | 1.2 | 98.8 | 0.0 | 2.59 | 1.04 | 0.86 | 0.89 | 4.67 | 21561 | 759 | 12 | 290 | 0 | 0 | 9607 | logfile |
✔ | 7RXB | 24727 | 2022-07-03 | 2021-08-22 | 3.07 | 3.22 | — | 3.2 | 0.009 | 1.15 | 0.0 | 0.05 | 14.60 | 0.01 | 2.437 | 0.72 | 0.00 | 6.0 | 94.0 | 0.0 | -4.88 | 0.67 | 0.89 | 3.48 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 14.50 | 0.00 | 2.378 | 2.10 | 0.25 | 5.3 | 94.7 | 0.0 | -0.04 | 0.27 | 0.65 | 0.89 | 3.11 | 8506 | 1096 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 7R5o | 14332 | 2022-07-07 | 2022-02-11 | 1.58 | 1.60 | 1.62 | 1.6 | 0.020 | 2.16 | 73.0 | 0.21 | 13.63 | 0.01 | 1.924 | 5.51 | 0.62 | 1.2 | 98.8 | 0.0 | 1.54 | 0.84 | 0.91 | 8.10 | 1.6 | 0.002 | 0.57 | 0.0 | 0.04 | 14.14 | 0.00 | 2.142 | 2.12 | 0.00 | 1.8 | 98.2 | 0.0 | 5.16 | 0.31 | 0.87 | 0.91 | 8.29 | 38520 | 4152 | 72 | 0 | 24 | 3384 | 0 | logfile |
✔ | 7K3V | 22657 | 2022-07-07 | 2020-09-14 | 1.34 | 1.44 | — | 1.4 | 0.005 | 0.79 | 0.0 | 0.04 | 14.68 | 0.00 | 0.211 | 3.06 | 0.00 | 1.2 | 98.8 | 0.0 | 3.60 | 0.69 | 0.78 | 8.90 | 1.4 | 0.005 | 0.76 | 0.0 | 0.04 | 14.89 | 0.01 | 1.975 | 2.14 | 0.00 | 1.2 | 98.8 | 0.0 | 3.84 | 0.31 | 0.73 | 0.83 | 8.91 | 38406 | 4128 | 72 | 0 | 334 | 2672 | 0 | logfile |
✔ | 6iG9 | 9664 | 2022-07-04 | 2018-09-25 | 4.6 | 5.44 | 4.27 | 4.3 | 0.007 | 1.07 | 0.0 | 0.05 | 9.51 | 0.01 | 2.299 | 9.69 | 0.73 | 10.2 | 89.7 | 0.2 | -3.99 | 0.69 | 0.65 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 5.13 | 0.00 | 2.207 | 2.18 | 0.00 | 8.6 | 91.4 | 0.0 | 0.94 | 1.55 | 0.84 | 0.80 | — | 17122 | 3386 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RRP | 24665 | 2022-07-04 | 2021-08-10 | 1.27 | 1.32 | — | 1.4 | 0.003 | 0.61 | 0.0 | 0.04 | 14.22 | 0.00 | 2.007 | 3.20 | 0.00 | 2.4 | 97.6 | 0.0 | 4.01 | 0.63 | 0.76 | 9.05 | 1.4 | 0.004 | 0.72 | 0.0 | 0.04 | 14.38 | 0.01 | 2.040 | 2.21 | 0.00 | 1.8 | 98.2 | 0.0 | 3.84 | 0.41 | 0.70 | 0.83 | 9.05 | 72254 | 4128 | 72 | 0 | 278 | 2496 | 34080 | logfile |