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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5X1G | 6701 | 2021-01-05 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | 0.002 | 0.62 | 0.0 | 0.03 | 3.04 | 0.00 | 2.649 | 0.00 | 0.00 | 0.0 | 100.0 | 0.0 | 4.51 | 3.37 | 0.01 | 0.14 | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M52 | 30083 | 2021-01-07 | 2020-03-09 | 2.6 | 2.82 | — | 2.8 | 0.009 | 0.97 | 0.0 | 0.06 | 15.32 | 0.00 | 2.390 | 0.63 | 0.00 | 4.7 | 95.3 | 0.0 | -0.23 | 0.69 | 0.86 | 3.58 | 2.8 | 0.005 | 0.69 | 0.0 | 0.04 | 15.58 | 0.00 | 2.342 | 0.54 | 0.00 | 4.6 | 95.4 | 0.0 | 3.23 | 0.38 | 0.78 | 0.89 | 2.86 | 33382 | 4104 | 38 | 0 | 6 | 8 | 0 | logfile |
✔ | 6M54 | 30084 | 2021-01-07 | 2020-03-09 | 2.4 | 2.57 | — | 2.5 | 0.012 | 1.16 | 0.0 | 0.07 | 14.96 | 0.01 | 2.591 | 0.71 | 0.00 | 4.1 | 95.9 | 0.0 | -0.37 | 0.69 | 0.85 | 5.34 | 2.5 | 0.003 | 0.62 | 0.0 | 0.04 | 16.75 | 0.00 | 2.345 | 0.80 | 0.17 | 4.0 | 96.0 | 0.0 | 3.90 | 0.33 | 0.81 | 0.89 | 3.74 | 33382 | 4104 | 38 | 0 | 6 | 8 | 0 | logfile |
✔ | 6iG9 | 9664 | 2021-01-06 | 2018-09-25 | 4.6 | 5.44 | 4.27 | 4.3 | 0.007 | 1.07 | 0.0 | 0.05 | 9.51 | 0.01 | 2.299 | 9.65 | 0.73 | 10.2 | 89.7 | 0.2 | -3.99 | 0.69 | 0.65 | — | 4.2 | 0.002 | 0.64 | 0.0 | 0.04 | 4.43 | 0.00 | 2.303 | 1.11 | 0.00 | 7.1 | 92.9 | 0.0 | 1.99 | 1.65 | 0.86 | 0.78 | — | 17122 | 3386 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VLZ | 8709 | 2021-01-06 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.67 | — | 4.4 | 0.003 | 0.76 | 0.0 | 0.00 | 4.99 | 0.00 | 2.275 | 1.13 | 0.00 | 5.1 | 94.9 | 0.0 | -0.94 | 2.07 | 0.81 | 0.77 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QPi | 4614 | 2021-01-05 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.004 | 0.57 | 0.0 | 0.04 | 5.55 | 0.00 | 2.452 | 1.49 | 0.00 | 2.8 | 97.2 | 0.0 | 0.26 | 1.21 | 0.42 | 0.63 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UVS | 20915 | 2021-01-06 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 1.50 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.003 | 0.64 | 0.0 | 0.04 | 9.39 | 0.01 | 1.890 | 1.56 | 0.00 | 10.8 | 89.2 | 0.0 | 1.68 | 1.42 | 0.72 | 0.85 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 7JG8 | 22314 | 2021-01-06 | 2020-07-18 | 3.3 | 2.35 | 3.37 | 3.3 | 0.009 | 1.68 | 0.0 | 3.30 | 7.41 | 0.01 | 2.424 | 0.51 | 0.00 | 3.2 | 96.6 | 0.2 | -1.30 | 0.62 | 0.55 | — | 3.4 | 0.003 | 1.21 | 0.0 | 1.22 | 6.08 | 0.00 | 2.102 | 1.58 | 0.00 | 9.6 | 90.3 | 0.1 | -1.40 | 1.32 | 0.71 | 0.69 | — | 19573 | 4827 | 26 | 0 | 7 | 0 | 0 | logfile |
✔ | 6RRS | 4989 | 2021-01-06 | 2019-05-20 | 3.9 | 4.30 | 4.41 | 3.8 | 0.013 | 2.10 | 0.0 | 0.00 | 2.04 | 0.01 | 2.364 | 0.79 | 0.00 | 3.9 | 95.3 | 0.8 | -0.85 | 0.56 | 0.64 | — | 3.8 | 0.004 | 0.80 | 0.0 | 0.00 | 6.71 | 0.00 | 2.212 | 1.98 | 0.00 | 13.7 | 86.3 | 0.0 | -0.97 | 1.80 | 0.69 | 0.74 | — | 93060 | 23220 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XB1 | 6714 | 2021-01-06 | 2017-03-15 | 3.0 | 3.16 | 2.84 | 3.1 | 0.007 | 0.71 | 0.0 | 0.05 | 10.82 | 0.00 | 2.173 | 4.34 | 0.00 | 2.0 | 98.0 | 0.0 | -6.31 | 0.80 | 0.88 | 4.19 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 14.81 | 0.00 | 2.166 | 2.02 | 0.00 | 2.0 | 98.0 | 0.0 | 3.80 | 0.66 | 0.78 | 0.84 | 3.14 | 30847 | 3720 | 48 | 0 | 0 | 55 | 0 | logfile |
✔ | 6L3T | 0825 | 2021-01-06 | 2019-10-15 | 2.34 | 2.41 | 2.27 | 2.4 | 0.011 | 1.07 | 0.0 | 0.05 | 16.88 | 0.01 | 2.306 | 1.05 | 3.61 | 1.0 | 99.0 | 0.0 | -3.24 | 0.68 | 0.86 | 4.85 | 2.4 | 0.002 | 0.59 | 0.0 | 0.03 | 16.26 | 0.00 | 1.939 | 2.29 | 1.51 | 0.6 | 99.4 | 0.0 | 2.93 | 3.48 | 0.67 | 0.85 | 4.16 | 19722 | 1206 | 18 | 0 | 6 | 204 | 9588 | logfile |
✔ | 6TQF | 10550 | 2021-01-05 | 2019-12-16 | 3.5 | 3.81 | — | 3.7 | 0.009 | 0.98 | 0.0 | 0.06 | 15.82 | 0.01 | 2.092 | 2.95 | 0.09 | 5.2 | 94.8 | 0.0 | -6.53 | 0.74 | 0.90 | 2.73 | 3.7 | 0.002 | 0.57 | 0.0 | 0.04 | 13.86 | 0.00 | 2.054 | 2.29 | 0.00 | 2.8 | 97.2 | 0.0 | -3.30 | 0.37 | 0.73 | 0.89 | 2.69 | 10426 | 1268 | 4 | 0 | 14 | 0 | 0 | logfile |
✔ | 6WX6 | 21951 | 2021-01-05 | 2020-05-09 | 2.0 | 2.10 | 2.08 | 2.1 | 0.006 | 0.69 | 0.0 | 0.04 | 14.94 | 0.00 | 2.277 | 0.00 | 0.00 | 1.2 | 98.8 | 0.0 | 1.60 | 0.77 | 0.88 | 7.70 | 2.1 | 0.004 | 0.53 | 0.0 | 0.04 | 16.17 | 0.00 | 2.000 | 2.44 | 0.69 | 1.2 | 98.8 | 0.0 | 4.65 | 0.53 | 0.77 | 0.88 | 7.35 | 68332 | 4128 | 56 | 0 | 8 | 2420 | 32664 | logfile |
✔ | 6UXA | 20931 | 2021-01-05 | 2019-11-07 | 4.5 | 5.05 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.628 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.71 | 0.63 | — | 6.0 | 0.002 | 0.64 | 0.0 | 0.05 | 3.53 | 0.00 | 2.322 | 2.46 | 0.00 | 2.1 | 97.9 | 0.0 | 2.46 | 4.60 | 0.73 | 0.67 | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UFR | 20759 | 2021-01-05 | 2019-09-24 | 2.5 | 2.80 | — | 2.8 | 0.012 | 0.96 | 0.0 | 0.07 | 13.71 | 0.01 | 2.209 | 5.48 | 0.00 | 6.6 | 93.4 | 0.0 | -1.99 | 0.50 | 0.87 | 5.55 | 2.8 | 0.005 | 0.68 | 0.0 | 0.06 | 17.16 | 0.00 | 2.393 | 2.68 | 1.82 | 4.9 | 95.1 | 0.0 | -0.91 | 0.98 | 0.50 | 0.87 | 5.00 | 4420 | 630 | 20 | 0 | 0 | 90 | 0 | logfile |
✔ | 6SAG | 10130 | 2021-01-08 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 12.99 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | 2.1 | 0.004 | 0.64 | 0.0 | 0.04 | 15.28 | 0.01 | 2.030 | 2.91 | 1.28 | 3.2 | 96.8 | 0.0 | 1.42 | 0.73 | 0.58 | 0.87 | 6.95 | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✔ | 6TAS | 10426 | 2021-01-05 | 2019-10-30 | 2.75 | 2.69 | — | 3.8 | 0.006 | 0.87 | 4.0 | 0.06 | 14.84 | 0.01 | 2.094 | 12.40 | 0.11 | 7.7 | 92.3 | 0.0 | -1.28 | 0.53 | 0.75 | 2.28 | 3.8 | 0.003 | 0.57 | 0.0 | 0.04 | 14.70 | 0.00 | 2.188 | 2.92 | 0.22 | 4.3 | 95.7 | 0.0 | 0.69 | 0.59 | 0.57 | 0.78 | 2.17 | 8552 | 1044 | 10 | 0 | 2 | 0 | 0 | logfile |
✔ | 6UXB | 20932 | 2021-01-05 | 2019-11-07 | 4.9 | 5.50 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.627 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.74 | 0.69 | — | 6.0 | 0.002 | 0.59 | 0.0 | 0.05 | 3.18 | 0.00 | 2.362 | 2.92 | 0.00 | 2.6 | 97.4 | 0.0 | 2.73 | 2.34 | 0.77 | 0.74 | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i5A | 4413 | 2021-01-05 | 2018-11-13 | 2.3 | 2.34 | 1.50 | 2.3 | 0.012 | 1.84 | 1.0 | 0.10 | 14.16 | 0.01 | 2.431 | 6.70 | 0.74 | 1.3 | 97.4 | 1.3 | -0.89 | 0.26 | 0.84 | 3.95 | 2.3 | 0.005 | 0.65 | 0.0 | 0.04 | 15.99 | 0.01 | 2.314 | 2.93 | 1.48 | 1.3 | 98.7 | 0.0 | 1.77 | 1.23 | 0.30 | 0.87 | 4.26 | 1206 | 153 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TSK | 10564 | 2021-01-07 | 2019-12-20 | 2.3 | 2.36 | — | 2.3 | 0.012 | 1.54 | 24.0 | 0.11 | 16.57 | 0.02 | 1.535 | 1.51 | 2.42 | 2.9 | 97.0 | 0.1 | -1.00 | 0.84 | 0.94 | 7.33 | 2.3 | 0.004 | 0.65 | 0.0 | 0.05 | 16.95 | 0.00 | 1.984 | 2.95 | 1.12 | 2.6 | 97.4 | 0.0 | 0.45 | 0.82 | 0.79 | 0.90 | 6.53 | 33632 | 4060 | 12 | 0 | 8 | 964 | 0 | logfile |