Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PBT	13302	2023-02-27	2021-08-02	3.3	2.86	3.16	3.1	0.004	0.69	0.0	0.04	14.81	0.01	1.830	1.18	0.12	1.1	98.9	0.0	-0.27	0.67	0.79	3.06	3.1	0.003	0.55	0.0	0.04	17.15	0.00	1.785	2.61	0.06	1.5	98.5	0.0	1.55	1.33	0.73	0.84	2.48	31318	1918	15	30	9	0	15439	logfile
✔	7TAN	25777	2023-02-20	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.32	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.51	0.0	0.03	27.86	0.00	2.221	2.61	0.78	2.0	98.0	0.0	2.33	0.33	0.83	0.87	2.17	12119	768	12	294	0	0	0	logfile
✔	7QL2	14061	2023-02-16	2021-12-19	2.95	2.96	2.65	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.5	0.003	0.58	0.0	0.05	12.52	0.00	2.497	2.63	1.48	8.3	91.7	0.0	-3.27	1.13	0.22	0.72	4.36	2286	150	3	0	0	0	1179	logfile
✔	7NT6	12584	2023-02-25	2021-03-09	4.3	4.34	3.99	3.3	0.012	2.07	0.0	0.15	8.75	0.01	2.119	1.13	0.00	4.0	95.6	0.3	-2.44	0.72	0.76	—	3.3	0.002	0.62	0.0	0.05	8.09	0.00	2.161	2.67	0.00	4.4	95.6	0.0	1.97	0.64	0.71	0.71	—	24128	5582	17	90	0	0	0	logfile
✔	7SoE	25268	2023-02-25	2021-10-29	2.8	2.87	2.84	2.8	0.010	1.27	0.0	0.07	9.85	0.01	2.416	1.06	0.15	2.0	98.0	0.0	0.29	0.74	0.80	3.95	2.8	0.003	0.60	0.0	0.05	13.00	0.00	2.196	2.68	1.79	1.9	98.1	0.0	0.90	0.54	0.73	0.84	3.13	25947	3783	15	0	57	0	0	logfile
✔	6CUD	7620	2023-02-23	2018-03-25	3.3	3.61	—	3.5	0.007	1.13	0.0	0.06	12.63	0.02	2.171	6.98	1.47	4.4	95.5	0.1	-3.04	0.71	0.83	1.93	3.5	0.003	0.58	0.0	0.04	13.29	0.00	2.256	2.76	0.37	3.7	96.2	0.1	2.32	1.93	0.72	0.85	1.53	21028	2816	8	0	12	0	0	logfile
✔	7USA	26730	2023-02-25	2022-04-23	2.8	2.94	2.77	3.0	0.014	1.57	18.0	0.13	9.66	0.01	1.968	1.95	0.04	3.5	96.2	0.3	0.09	0.75	0.85	4.68	3.0	0.003	0.58	0.0	0.04	13.37	0.00	2.267	2.76	1.88	2.4	97.5	0.1	0.67	0.98	0.74	0.90	4.29	24307	3181	33	0	90	0	0	logfile
✔	7STo	25435	2023-02-25	2021-11-14	3.15	3.45	—	3.3	0.007	0.82	0.0	0.04	10.39	0.00	2.289	1.13	0.15	2.3	97.7	0.0	1.91	0.68	0.82	3.05	3.3	0.003	0.46	0.0	0.04	12.87	0.00	2.194	2.76	0.15	3.1	96.7	0.1	1.88	1.23	0.70	0.86	2.74	25210	1580	4	0	10	0	12268	logfile
✔	7STL	25432	2023-02-25	2021-11-14	2.95	3.30	—	3.2	0.004	0.75	0.0	0.04	10.31	0.00	2.190	0.38	0.15	2.3	97.7	0.0	1.82	0.67	0.82	3.24	3.2	0.004	0.48	0.0	0.04	13.91	0.00	2.104	2.76	0.59	3.5	96.3	0.1	1.65	0.57	0.66	0.84	3.21	25668	1600	4	0	8	0	12568	logfile
✔	7XTZ	33453	2023-02-21	2022-05-18	2.8	2.99	2.73	2.9	0.012	0.86	0.0	0.05	13.31	0.00	2.204	0.77	0.42	3.2	96.8	0.0	-0.29	0.83	0.84	4.09	2.9	0.003	0.48	0.0	0.04	14.16	0.00	2.041	2.79	0.80	3.0	97.0	0.0	-0.04	0.30	0.83	0.86	3.83	51900	3291	21	0	75	0	25032	logfile
✔	7KPW	22990	2023-02-17	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile
✔	7KoD	22972	2023-02-26	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.86	0.00	1.860	2.84	0.22	0.6	99.4	0.0	5.19	0.83	0.87	0.93	8.00	68186	4128	48	0	0	1727	32643	logfile
✔	7Q8C	13864	2023-02-21	2021-11-11	2.72	2.78	2.67	2.7	0.005	0.62	0.0	0.05	10.88	0.00	1.953	1.76	0.00	3.0	97.0	0.0	0.25	0.73	0.89	5.04	2.7	0.003	0.64	0.0	0.05	15.05	0.00	1.803	2.86	1.42	3.4	96.6	0.0	0.20	0.89	0.73	0.91	4.28	14975	1850	15	0	10	360	0	logfile
✔	7PBS	13301	2023-02-27	2021-08-02	3.3	2.55	—	3.2	0.005	0.71	0.0	0.05	14.69	0.01	1.778	1.66	0.25	0.7	99.3	0.0	-0.18	0.65	0.77	3.13	3.2	0.003	0.54	0.0	0.04	17.25	0.00	1.779	2.87	0.06	1.8	98.2	0.0	1.48	1.33	0.71	0.82	2.45	31328	1918	15	30	11	0	15439	logfile
✔	6oVH	20212	2023-02-19	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.003	0.75	0.0	0.04	18.69	0.00	2.055	2.87	0.38	0.8	99.2	0.0	2.63	0.98	0.77	0.88	3.77	10895	1272	36	0	68	171	0	logfile
✔	7BKP	12213	2023-02-20	2021-01-16	2.8	2.78	2.75	2.9	0.009	0.84	0.0	0.05	12.30	0.00	1.824	2.22	0.32	6.5	93.2	0.3	-2.15	0.66	0.84	3.66	2.9	0.002	0.51	0.0	0.04	14.72	0.00	2.089	2.88	1.13	5.1	94.9	0.0	1.46	2.05	0.64	0.86	2.83	12118	689	4	28	3	0	5956	logfile
✔	7NPS	12518	2023-02-22	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.23	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.002	0.59	0.0	0.05	12.84	0.00	1.895	2.89	0.00	1.8	98.2	0.0	-0.02	0.68	0.83	0.83	2.26	55350	3732	9	0	0	0	27681	logfile
✔	7PKB	13467	2023-02-21	2021-08-25	3.2	2.68	3.08	3.1	0.008	0.90	0.0	0.14	13.28	0.01	1.950	3.97	0.00	5.1	94.8	0.1	-0.98	0.72	0.85	5.32	3.2	0.003	0.70	0.0	0.14	13.54	0.00	2.127	2.91	0.00	3.4	96.6	0.0	-0.34	0.58	0.73	0.87	4.70	16145	1030	15	0	10	5	7970	logfile
✔	7QK3	14030	2023-02-16	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.72	0.0	0.05	16.27	0.00	2.309	2.92	0.64	2.8	97.2	0.0	-2.78	2.36	0.39	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	6WX6	21951	2023-02-26	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.003	0.52	0.0	0.03	16.21	0.00	2.020	2.93	0.69	1.2	98.8	0.0	4.75	0.53	0.79	0.90	7.39	68332	4128	56	0	8	2420	32664	logfile

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