Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E47	27882	2023-08-13	2022-08-17	2.32	2.95	2.51	2.8	0.005	0.42	0.0	0.09	12.59	0.02	1.901	1.08	0.96	3.9	96.1	0.0	0.60	0.74	0.91	4.96	2.8	0.004	0.66	0.0	0.05	13.83	0.01	1.902	2.04	1.49	5.2	94.7	0.1	-0.63	0.28	0.70	0.89	5.32	115917	1179	11	3016	1	0	41886	logfile
✔	8E45	27880	2023-08-13	2022-08-17	2.3	2.93	2.71	2.8	0.005	0.39	0.0	0.03	12.39	0.02	1.957	1.35	0.74	4.5	95.4	0.2	0.33	0.71	0.90	5.24	2.8	0.005	0.62	0.0	0.04	13.83	0.01	1.895	2.05	1.38	5.8	93.9	0.3	-0.43	0.59	0.69	0.90	5.62	115749	1179	11	3015	1	0	41831	logfile
✔	7UPD	26662	2023-08-14	2022-04-14	2.4	2.56	2.38	2.5	0.003	0.57	0.0	0.05	15.86	0.00	2.222	1.74	1.18	1.7	98.3	0.0	0.86	0.78	0.89	5.05	2.5	0.003	0.60	0.0	0.05	16.61	0.00	2.105	2.06	2.09	1.8	98.2	0.0	0.82	0.24	0.78	0.90	4.97	15801	2016	12	0	12	0	0	logfile
✔	8G08	29649	2023-08-16	2023-01-31	2.8	3.66	2.85	3.1	0.005	0.68	0.0	0.23	5.00	0.00	1.824	0.59	0.00	2.4	97.6	0.0	1.01	0.74	0.70	—	3.3	0.005	0.74	0.0	0.04	5.09	0.00	1.767	2.06	0.00	7.9	92.1	0.0	1.02	1.85	0.81	0.80	—	19595	4859	26	0	10	0	0	logfile
✔	8G0C	29653	2023-08-16	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.85	0.0	0.17	6.80	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.006	0.79	0.0	0.07	5.95	0.00	1.778	2.08	0.00	9.1	90.9	0.0	0.66	1.21	0.79	0.80	—	19874	4860	30	0	16	0	0	logfile
✔	7STM	25433	2023-08-18	2021-11-14	3.02	3.45	—	3.3	0.008	0.93	0.0	0.05	10.40	0.00	2.229	1.33	0.31	2.4	97.6	0.0	2.06	0.68	0.82	3.32	3.2	0.002	0.43	0.0	0.04	12.45	0.00	2.023	2.11	0.00	3.5	96.2	0.3	2.38	3.61	0.66	0.85	2.89	25040	1602	4	0	12	0	12100	logfile
✔	8FJ5	29215	2023-08-15	2022-12-19	2.9	3.03	2.92	3.0	0.004	0.62	0.0	0.04	11.79	0.00	2.391	3.19	0.00	3.4	96.6	0.0	1.51	0.55	0.86	3.82	3.0	0.003	0.54	0.0	0.04	13.84	0.00	2.122	2.11	0.37	3.7	96.3	0.0	1.50	0.36	0.56	0.87	3.12	18980	2660	20	0	0	0	0	logfile
✔	7R4T	14316	2023-08-10	2022-02-09	2.75	2.72	2.62	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.004	0.55	0.0	0.05	15.87	0.00	2.374	2.12	0.76	2.7	97.3	0.0	-1.45	2.29	0.42	0.89	6.04	7074	456	6	0	0	0	3606	logfile
✔	6L3T	0825	2023-08-16	2019-10-15	2.34	2.41	2.27	2.4	0.010	1.07	0.0	0.05	15.75	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.002	0.55	0.0	0.03	16.32	0.00	1.992	2.15	1.20	1.1	98.9	0.0	3.02	1.61	0.67	0.87	4.18	19722	1206	18	0	6	204	9588	logfile
✔	7PY2	13708	2023-08-09	2021-10-08	2.59	2.64	1.54	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.006	0.92	0.0	0.05	18.12	0.00	2.134	2.20	2.50	5.2	94.8	0.0	-3.96	1.38	0.49	0.88	5.69	2152	316	4	0	0	0	0	logfile
✔	7VQQ	32092	2023-08-09	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.006	0.80	0.0	0.04	12.91	0.00	2.234	2.21	0.91	5.6	94.4	0.0	-4.97	0.28	0.48	0.87	4.95	1968	273	3	0	0	0	0	logfile
✔	7UL2	26589	2023-08-09	2022-04-03	2.4	2.59	2.47	2.6	0.008	1.02	0.0	0.06	12.80	0.01	2.306	6.83	0.84	1.5	98.5	0.0	1.60	0.71	0.84	4.40	2.6	0.003	0.56	0.0	0.04	14.23	0.00	2.265	2.21	1.26	0.3	99.7	0.0	2.55	1.31	0.65	0.84	2.92	2624	347	3	0	2	13	0	logfile
✔	7W8S	32358	2023-08-10	2021-12-08	2.85	3.08	—	3.1	0.003	0.60	0.0	0.04	11.01	0.01	2.102	0.87	3.48	3.4	96.6	0.0	-4.03	0.67	0.82	4.11	3.1	0.003	0.61	0.0	0.04	15.38	0.00	2.236	2.22	2.90	2.8	97.2	0.0	-1.27	0.98	0.67	0.83	3.42	6455	788	4	0	3	0	0	logfile
✔	7K3W	22658	2023-08-24	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	20.58	0.00	1.934	3.30	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.004	0.67	0.0	0.04	14.88	0.00	2.032	2.26	0.00	1.8	98.2	0.0	4.02	0.24	0.75	0.82	9.16	39086	4128	72	0	382	2680	0	logfile
✔	8EL8	28224	2023-08-09	2022-09-23	3.2	3.53	3.33	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.003	0.45	0.0	0.04	15.16	0.00	2.353	2.27	0.00	2.4	97.6	0.0	1.11	0.26	0.67	0.85	2.07	4467	597	2	0	0	0	0	logfile
✔	7Xo1	33333	2023-08-09	2022-04-30	3.0	2.71	1.85	3.1	0.002	0.53	0.0	0.05	16.42	0.00	2.269	6.86	0.00	5.0	95.0	0.0	-2.46	0.45	0.86	4.75	3.1	0.003	0.59	0.0	0.05	17.68	0.00	2.230	2.29	2.33	6.4	93.6	0.0	-2.11	1.59	0.43	0.86	5.91	2550	372	6	0	0	0	0	logfile
✔	6L3V	0827	2023-08-16	2019-10-15	2.63	2.90	2.72	2.9	0.009	0.92	0.0	0.04	17.16	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.003	0.60	0.0	0.03	16.70	0.00	2.186	2.31	1.41	0.8	99.2	0.0	2.15	3.58	0.59	0.87	2.86	19416	1206	12	0	6	0	9528	logfile
✔	6UFR	20759	2023-08-09	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.005	0.68	0.0	0.06	17.05	0.00	2.401	2.35	3.41	4.9	95.1	0.0	-0.88	0.97	0.52	0.89	5.22	4420	630	20	0	0	90	0	logfile
✔	7T2E	25611	2023-08-09	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	8E49	27884	2023-08-13	2022-08-17	2.05	2.78	2.50	2.5	0.005	0.42	0.0	0.03	12.72	0.02	1.945	1.31	0.85	4.6	95.4	0.0	0.91	0.71	0.91	5.79	2.5	0.005	0.61	0.0	0.04	13.66	0.01	1.904	2.39	1.38	5.2	94.8	0.1	0.05	0.23	0.70	0.92	5.98	115871	1179	11	3016	1	0	41885	logfile

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