Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PW8	13678	2023-04-24	2021-10-06	2.82	2.88	—	2.9	0.005	0.75	4.0	0.16	12.38	0.00	2.086	3.97	0.18	3.4	96.6	0.0	1.21	0.74	0.85	2.97	2.9	0.004	0.56	0.0	0.04	14.71	0.00	1.963	3.09	1.71	2.9	97.1	0.0	1.55	0.42	0.75	0.89	3.11	18960	2434	5	0	199	0	0	logfile
✔	6MRT	9212	2023-04-19	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.38	0.00	2.211	3.09	1.33	0.6	99.4	0.0	5.41	3.08	0.73	0.87	2.47	26868	3420	12	0	0	0	0	logfile
✔	7RHX	24470	2023-04-27	2021-07-19	3.23	3.49	3.31	3.4	0.004	0.79	0.0	0.05	20.49	0.01	2.289	1.05	0.00	2.0	98.0	0.0	-0.38	0.75	0.84	2.43	3.4	0.003	0.60	0.0	0.04	21.99	0.00	2.124	3.10	0.00	2.9	97.1	0.0	1.42	1.07	0.76	0.87	1.58	25787	1288	8	168	0	0	12159	logfile
✔	7ZH2	14718	2023-04-27	2022-04-05	2.71	2.24	2.66	2.5	0.003	0.62	0.0	0.04	13.21	0.00	2.038	2.41	0.30	3.3	96.6	0.1	-0.81	0.73	0.81	3.90	2.5	0.003	0.61	0.0	0.05	15.62	0.00	2.217	3.10	1.74	4.6	95.4	0.0	-0.72	0.39	0.74	0.83	4.04	24419	3060	9	0	36	0	0	logfile
✔	8ADG	15362	2023-04-26	2022-07-08	3.0	3.31	3.06	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.003	0.51	0.0	0.04	15.23	0.00	1.375	3.11	1.11	4.0	96.0	0.0	0.35	0.90	0.60	0.83	3.53	23183	1506	6	0	0	0	11375	logfile
✔	8FHQ	29099	2023-04-20	2022-12-14	2.81	3.05	2.83	3.1	0.008	0.82	0.0	0.05	13.57	0.01	2.303	4.02	0.65	3.5	96.5	0.0	-1.14	0.62	0.86	3.75	3.1	0.003	0.50	0.0	0.04	14.90	0.00	2.261	3.14	0.52	2.3	97.7	0.0	0.50	0.90	0.62	0.86	3.57	7306	950	4	0	4	0	0	logfile
✔	7S8L	24896	2023-04-20	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	7ADZ	11734	2023-04-25	2020-09-17	2.5	2.56	—	2.5	0.015	1.54	0.0	0.09	11.19	0.01	1.343	4.44	0.08	2.0	98.0	0.0	-0.11	0.64	0.85	4.72	2.5	0.003	0.60	0.0	0.04	16.34	0.00	2.160	3.15	1.73	2.7	97.3	0.0	0.40	0.66	0.66	0.88	4.16	67794	8508	30	0	0	0	0	logfile
✔	7P8W	13256	2023-04-24	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.55	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.64	0.0	0.04	15.80	0.00	2.207	3.16	0.52	3.0	97.0	0.0	0.52	1.15	0.85	0.91	6.20	17668	2008	12	0	8	1110	0	logfile
✔	7S8o	24899	2023-04-20	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.002	0.53	0.0	0.04	15.63	0.00	2.207	3.18	0.92	4.4	95.6	0.0	1.05	0.40	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7S8P	24900	2023-04-20	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.81	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.8	0.004	0.67	0.0	0.04	15.58	0.00	2.121	3.18	2.61	5.4	94.6	0.0	0.13	0.36	0.84	0.84	3.71	8093	1089	5	0	1	0	0	logfile
✔	7SoD	25267	2023-04-20	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.24	0.0	0.08	9.29	0.01	2.129	0.40	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	3.4	0.005	0.58	0.0	0.04	12.95	0.00	2.297	3.20	0.25	3.5	96.5	0.0	0.95	1.54	0.67	0.90	5.59	3830	473	5	0	7	0	0	logfile
✔	6U68	20662	2023-04-21	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.003	0.71	0.0	0.05	4.13	0.00	2.325	3.21	0.00	6.1	93.9	0.0	-0.04	1.78	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	8D68	27220	2023-04-22	2022-06-06	3.36	3.13	3.28	3.2	0.008	1.06	0.0	0.06	15.51	0.01	2.212	3.37	0.00	7.0	93.0	0.0	-1.43	0.70	0.84	3.63	3.2	0.005	0.68	0.0	0.05	15.03	0.00	2.171	3.22	0.14	7.1	92.9	0.0	-0.63	0.30	0.70	0.83	2.87	13055	1560	10	0	5	0	0	logfile
✔	7US6	26727	2023-04-26	2022-04-23	3.8	3.39	3.16	3.4	0.015	1.49	12.0	0.11	9.61	0.01	2.101	1.86	0.45	2.7	96.9	0.4	0.23	0.72	0.84	5.29	3.4	0.004	0.63	0.0	0.04	12.83	0.00	2.206	3.23	0.35	2.2	97.7	0.1	0.46	1.76	0.75	0.86	4.39	23747	3159	32	0	107	0	0	logfile
✔	7Lii	23379	2023-04-26	2021-01-27	3.55	3.83	—	3.7	0.007	0.90	0.0	0.06	13.86	0.00	2.299	5.65	0.87	9.9	90.1	0.0	-2.72	0.82	0.84	2.16	3.7	0.006	0.75	0.0	0.05	15.30	0.00	2.260	3.23	0.42	10.3	89.7	0.0	-2.13	0.35	0.83	0.84	1.83	127320	15480	60	0	60	0	0	logfile
✔	7UHC	26512	2023-04-26	2022-03-26	3.1	3.68	3.18	3.5	0.010	1.33	0.0	0.08	9.98	0.00	2.551	0.55	0.31	2.6	97.3	0.1	0.29	0.79	0.80	4.24	3.5	0.002	0.55	0.0	0.04	12.87	0.00	2.172	3.26	0.05	1.9	98.1	0.0	1.33	0.56	0.75	0.80	3.90	23136	3192	21	0	60	0	0	logfile
✔	7LZE	23605	2023-04-20	2021-03-09	3.23	3.26	3.28	3.6	0.003	0.45	0.0	0.04	13.89	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.5	0.004	0.58	0.0	0.04	14.97	0.00	2.153	3.27	0.00	7.7	92.3	0.0	-0.99	1.12	0.77	0.85	2.67	7842	1011	9	0	9	0	0	logfile
✔	6T72	10389	2023-04-27	2019-10-21	3.7	3.79	—	3.8	0.008	1.55	0.0	0.11	14.78	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.002	0.55	0.0	0.03	15.25	0.00	2.116	3.29	0.38	2.0	98.0	0.0	1.85	1.24	0.78	0.87	1.54	26278	3388	42	0	210	0	0	logfile
✔	7WCM	32424	2023-04-20	2021-12-20	2.33	2.14	—	2.2	0.005	0.70	0.0	0.16	14.13	0.00	2.281	3.66	0.00	2.5	97.5	0.0	1.05	0.64	0.84	4.03	2.2	0.002	0.55	0.0	0.04	15.98	0.00	2.281	3.30	1.02	2.0	98.0	0.0	1.56	0.31	0.63	0.87	4.04	8232	1047	5	0	1	0	0	logfile

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