Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CUD	7620	2022-05-14	2018-03-25	3.3	3.61	—	3.5	0.007	1.13	0.0	0.06	12.63	0.02	2.171	6.98	1.47	4.4	95.5	0.1	-3.04	0.71	0.83	1.93	3.5	0.002	0.55	0.0	0.04	13.46	0.00	2.265	3.15	0.16	3.2	96.7	0.1	2.37	1.60	0.72	0.85	1.68	21028	2816	8	0	12	0	0	logfile
✔	6TSK	10564	2022-05-16	2019-12-20	2.3	2.36	—	2.3	0.012	1.54	24.0	0.11	16.57	0.02	1.535	1.76	2.42	2.9	97.0	0.1	-1.00	0.84	0.94	7.33	2.3	0.003	0.63	0.0	0.05	17.01	0.00	1.964	3.15	1.73	2.5	97.5	0.0	0.43	0.82	0.81	0.91	6.45	33632	4060	12	0	8	964	0	logfile
✔	7oDL	12842	2022-05-15	2021-04-29	3.03	2.61	2.99	2.9	0.003	0.58	0.0	0.05	14.46	0.00	2.028	2.81	0.64	5.8	94.1	0.1	-1.28	0.76	0.82	3.77	2.9	0.008	0.88	1.0	0.05	15.63	0.00	2.192	3.17	0.04	5.7	94.2	0.1	-0.95	1.08	0.75	0.84	3.58	24338	3066	6	0	33	0	0	logfile
✔	7AEK	11747	2022-05-16	2020-09-17	2.5	2.55	—	2.5	0.005	0.87	0.0	0.05	13.77	0.01	1.547	1.99	0.00	2.7	97.3	0.0	-3.80	0.56	0.86	4.32	2.5	0.004	0.75	0.0	0.05	15.80	0.01	2.113	3.17	1.68	3.1	96.9	0.0	0.21	0.46	0.56	0.83	3.79	91116	11808	18	0	0	0	0	logfile
✔	7oE2	12859	2022-05-13	2021-05-01	2.4	3.30	2.26	2.8	0.006	0.68	0.0	0.05	17.81	0.01	2.179	3.14	2.44	2.2	97.8	0.0	0.75	0.63	0.81	5.16	2.8	0.003	0.51	0.0	0.04	18.09	0.00	2.204	3.18	1.31	2.4	97.6	0.0	1.68	0.81	0.65	0.92	4.27	10589	1375	20	0	0	154	0	logfile
✔	7M05	23609	2022-05-12	2021-03-10	2.39	2.66	2.49	2.6	0.013	1.00	0.0	0.06	14.78	0.01	2.064	3.94	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.003	0.57	0.0	0.05	16.31	0.00	2.059	3.20	1.25	2.3	97.6	0.1	0.55	1.28	0.79	0.84	3.92	57152	3636	12	0	4	0	28188	logfile
✔	6T72	10389	2022-05-15	2019-10-21	3.7	3.79	—	3.8	0.013	1.64	0.0	0.11	14.69	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.8	0.002	0.52	0.0	0.03	14.78	0.00	2.134	3.23	0.17	1.8	98.2	0.0	1.93	1.24	0.78	0.87	1.63	26278	3388	14	0	210	0	0	logfile
✔	7VFD	31949	2022-05-13	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.85	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.002	0.49	0.0	0.05	15.37	0.00	2.246	3.23	0.47	2.1	97.9	0.0	0.43	1.13	0.80	0.88	5.42	13262	1623	6	0	0	350	0	logfile
✔	7S8L	24896	2022-05-12	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.57	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.003	0.62	0.0	0.04	15.55	0.01	2.252	3.26	1.34	3.5	96.5	0.0	1.25	0.35	0.85	0.84	3.95	8177	1096	6	0	0	0	0	logfile
✔	7QB9	13882	2022-05-12	2021-11-18	3.1	3.36	3.16	3.4	0.008	1.01	0.0	0.06	13.13	0.01	2.291	3.10	0.00	3.5	96.5	0.0	-2.92	0.56	0.81	2.83	3.4	0.002	0.51	0.0	0.04	14.11	0.00	2.232	3.27	0.19	1.5	98.5	0.0	2.00	0.36	0.57	0.83	2.48	5419	598	4	0	26	0	0	logfile
✔	7AE0	11735	2022-05-16	2020-09-17	2.4	2.48	—	2.5	0.015	1.66	4.0	0.10	9.99	0.01	1.115	4.35	0.00	1.4	98.6	0.0	0.61	0.59	0.81	4.68	2.5	0.005	0.78	0.0	0.05	16.41	0.01	2.137	3.28	2.14	2.5	97.5	0.0	-0.20	1.26	0.61	0.84	4.53	92718	11736	36	0	0	0	0	logfile
✔	7QET	13940	2022-05-14	2021-12-03	2.1	2.53	2.11	2.3	0.009	0.63	0.0	0.04	13.40	0.00	2.140	1.99	2.38	2.2	97.8	0.0	1.49	0.82	0.90	3.95	2.3	0.004	0.56	0.0	0.04	14.36	0.00	2.189	3.28	1.98	1.2	98.8	0.0	3.48	0.38	0.82	0.92	3.56	19205	2256	36	0	60	305	0	logfile
✔	7RGL	24451	2022-05-18	2021-07-15	2.4	2.51	—	2.4	0.013	1.20	0.0	0.06	15.88	0.01	2.317	3.77	3.66	3.7	96.2	0.2	-1.40	0.65	0.88	5.76	2.4	0.003	0.55	0.0	0.04	16.16	0.00	2.013	3.30	0.98	3.7	96.3	0.0	0.41	0.96	0.66	0.89	5.49	50936	3328	16	0	16	0	25408	logfile
✔	7LZE	23605	2022-05-12	2021-03-09	3.23	3.26	3.28	3.6	0.002	0.42	0.0	0.04	13.80	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.6	0.004	0.56	0.0	0.04	14.83	0.00	2.158	3.40	0.00	7.3	92.7	0.0	-0.75	1.12	0.78	0.84	2.79	7842	1011	9	0	9	0	0	logfile
✔	6WX6	21951	2022-05-14	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.55	0.0	0.04	16.24	0.00	2.003	3.40	0.69	1.2	98.8	0.0	4.62	0.53	0.78	0.90	7.39	68332	4128	56	0	8	2420	32664	logfile
✔	7TAT	25784	2022-05-15	2021-12-21	3.2	3.44	3.17	3.4	0.009	1.32	1.0	0.07	9.52	0.01	2.376	0.65	0.18	2.8	96.8	0.4	0.25	0.74	0.78	4.94	3.4	0.003	0.60	0.0	0.05	12.23	0.00	2.219	3.41	0.41	2.0	97.8	0.1	0.77	0.51	0.72	0.79	4.26	23926	3564	20	0	53	0	0	logfile
✔	7BH9	12187	2022-05-12	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.76	0.0	0.05	13.23	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.002	0.53	0.0	0.04	15.21	0.00	2.179	3.42	1.00	2.1	97.9	0.0	0.84	0.39	0.80	0.83	2.44	5876	730	3	0	4	0	0	logfile
✔	7SiP	25147	2022-05-12	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.49	0.0	0.04	15.47	0.00	2.222	3.43	1.74	0.5	99.5	0.0	1.36	0.99	0.61	0.83	2.67	7560	892	12	0	36	20	0	logfile
✔	6HYP	0309	2022-05-13	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.002	0.67	0.0	0.04	8.23	0.00	2.173	3.43	0.00	7.0	92.9	0.1	-1.16	0.61	0.76	0.73	—	12392	2082	1	0	192	0	0	logfile
✔	6RLB	4918	2022-05-14	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.2	0.003	0.72	0.0	0.04	5.19	0.00	2.243	3.44	0.00	11.3	88.6	0.0	-0.76	1.85	0.86	0.66	—	20407	4122	14	0	0	0	0	logfile

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