Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UY0	20945	2021-12-01	2019-11-09	3.23	3.39	—	3.4	0.014	1.85	0.0	0.08	13.82	0.00	1.861	1.22	0.00	4.3	95.7	0.0	-2.56	0.47	0.67	1.98	3.4	0.003	0.54	0.0	0.04	15.79	0.00	2.022	5.15	0.28	2.2	97.8	0.0	1.71	1.14	0.67	0.84	1.38	9684	1210	1	0	7	0	0	logfile
✔	7P6D	13226	2021-12-01	2021-07-15	3.3	3.43	3.17	3.5	0.003	0.66	0.0	0.05	11.41	0.00	2.575	2.25	0.00	2.7	97.3	0.0	-2.54	0.55	0.77	3.72	3.5	0.006	0.74	0.0	0.05	13.64	0.01	2.085	5.18	0.40	11.3	88.7	0.0	-3.10	2.42	0.47	0.83	4.68	4340	575	5	0	0	0	0	logfile
✔	5TTP	8467	2021-12-01	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.75	0.0	0.04	4.87	0.00	2.268	5.23	0.00	12.2	87.7	0.2	0.48	2.21	0.67	0.70	—	5616	1138	2	0	0	0	0	logfile
✔	7N74	24219	2021-12-01	2021-06-09	2.8	3.52	2.84	3.3	0.006	0.89	0.0	0.10	12.93	0.01	1.844	7.52	0.00	2.2	97.8	0.0	0.74	0.75	0.84	3.27	3.3	0.002	0.58	0.0	0.04	14.62	0.00	2.122	5.25	1.93	1.4	98.6	0.0	1.71	0.54	0.69	0.83	2.47	7859	1036	1	0	4	3	0	logfile
✔	5oH0	3809	2021-12-01	2017-07-13	4.2	4.36	—	4.3	0.003	0.75	0.0	0.05	8.94	0.00	2.295	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.003	0.53	0.0	0.04	10.58	0.00	2.225	5.25	0.00	2.8	97.2	0.0	-2.07	0.63	0.64	0.86	—	6588	942	6	0	0	0	0	logfile
✔	6WYJ	21966	2021-12-01	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.004	0.61	0.0	0.04	14.39	0.00	2.257	5.25	0.96	1.5	98.5	0.0	1.66	0.59	0.64	0.80	1.50	2949	398	1	0	0	0	0	logfile
✔	7K0J	22599	2021-12-01	2020-09-04	3.1	3.65	—	3.6	0.006	0.71	0.0	0.05	13.14	0.00	2.210	5.54	0.00	3.2	96.8	0.0	0.19	0.64	0.80	3.76	3.6	0.004	0.52	0.0	0.04	14.55	0.00	2.210	5.28	0.12	2.3	97.7	0.0	0.85	0.40	0.64	0.81	3.20	7683	977	5	0	3	0	0	logfile
✔	7MSX	23971	2021-12-01	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.81	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.49	0.0	0.04	15.13	0.00	2.210	5.29	0.49	2.1	97.9	0.0	1.21	1.12	0.79	0.87	3.16	3706	473	1	0	3	0	0	logfile
✔	7BV2	30210	2021-12-01	2020-04-09	2.5	2.82	—	2.8	0.005	0.74	0.0	0.05	14.51	0.00	1.942	5.48	0.00	1.3	98.7	0.0	0.03	0.77	0.83	4.56	2.8	0.004	0.57	0.0	0.04	15.77	0.00	2.187	5.30	0.90	2.1	97.9	0.0	0.33	0.43	0.71	0.84	4.08	8630	1011	8	25	6	5	0	logfile
✔	7BTF	30178	2021-12-01	2020-04-01	2.95	3.30	3.02	3.2	0.009	0.73	0.0	0.05	12.87	0.00	2.262	6.36	0.00	7.0	93.0	0.0	-2.91	0.77	0.89	4.15	3.2	0.004	0.62	0.0	0.04	15.36	0.00	2.157	5.32	2.05	4.2	95.8	0.0	-0.23	0.95	0.78	0.90	3.45	9685	1213	5	0	2	0	0	logfile
✔	6NSJ	0498	2021-12-01	2019-01-24	2.7	3.69	2.67	3.6	0.007	1.12	0.0	0.06	13.78	0.01	2.340	8.25	2.18	6.0	94.0	0.0	-4.40	0.61	0.75	5.00	3.6	0.004	0.63	0.0	0.04	14.27	0.00	2.223	5.32	1.74	4.1	95.9	0.0	1.71	0.52	0.56	0.72	3.08	9096	1092	12	0	18	0	0	logfile
✔	7SoF	25269	2021-12-01	2021-10-29	3.6	3.79	3.59	3.8	0.010	1.28	1.0	0.07	8.50	0.01	2.563	1.12	0.00	3.4	96.6	0.0	0.64	0.67	0.78	4.10	3.8	0.003	0.64	0.0	0.04	13.13	0.00	2.164	5.33	0.88	2.7	97.3	0.0	0.17	1.37	0.70	0.82	3.60	3735	488	5	0	9	0	0	logfile
✔	6W2X	21533	2021-12-01	2020-03-08	3.6	3.76	—	3.7	0.006	0.61	0.0	0.05	14.30	0.00	2.034	5.55	0.00	7.1	92.9	0.0	-3.47	0.71	0.76	2.41	3.7	0.011	1.19	1.0	0.04	15.23	0.01	2.142	5.34	0.12	4.1	95.9	0.0	-1.17	0.95	0.73	0.81	2.17	9860	1345	6	0	10	0	0	logfile
✔	7LHV	23351	2021-12-01	2021-01-26	2.75	3.33	2.83	3.3	0.006	0.75	0.0	0.04	14.49	0.00	2.299	4.65	0.00	3.5	96.5	0.0	0.97	0.55	0.73	2.12	3.3	0.002	0.50	0.0	0.04	14.34	0.00	2.191	5.35	0.52	3.6	96.4	0.0	1.15	0.56	0.53	0.75	2.94	9094	1150	6	0	8	2	0	logfile
✔	6SGR	10182	2021-12-01	2019-08-05	3.17	3.28	3.08	3.2	0.004	0.54	0.0	0.04	13.56	0.00	2.201	5.13	0.00	3.2	96.8	0.0	-3.06	0.69	0.83	3.52	3.2	0.003	0.54	0.0	0.04	15.48	0.00	1.986	5.36	0.17	2.8	97.2	0.0	1.14	0.77	0.71	0.86	2.87	54142	3528	8	0	0	0	27330	logfile
✔	6BHU	7099	2021-12-02	2017-10-31	3.14	3.58	3.62	3.7	0.008	1.22	0.0	0.06	12.26	0.00	1.915	0.69	0.00	3.7	96.3	0.0	-1.76	0.48	0.69	2.60	3.7	0.003	0.59	0.0	0.04	15.33	0.00	1.999	5.37	0.47	2.0	98.0	0.0	1.76	0.74	0.58	0.83	1.52	10273	1208	1	0	127	0	0	logfile
✔	7E0F	30931	2021-12-01	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.06	0.00	2.487	5.37	0.00	9.2	90.8	0.0	-3.48	0.60	0.39	0.80	3.91	2022	294	6	0	0	0	0	logfile
✔	7N8i	24237	2021-12-01	2021-06-14	3.0	3.22	3.02	3.2	0.011	1.22	0.0	0.07	10.84	0.01	2.309	0.71	0.26	1.6	98.4	0.0	1.04	0.75	0.87	5.46	3.2	0.008	0.73	0.0	0.05	14.99	0.01	2.088	5.38	1.03	2.8	97.2	0.0	0.99	0.98	0.75	0.91	5.67	3600	445	3	0	5	0	0	logfile
✔	7KPW	22990	2021-12-01	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	7K0L	22601	2021-12-01	2020-09-04	3.4	3.83	—	3.7	0.004	0.69	0.0	0.04	12.60	0.00	2.141	4.28	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.52	0.0	0.04	13.90	0.00	2.200	5.46	0.25	2.1	97.9	0.0	0.87	1.05	0.74	0.88	2.79	7619	964	4	0	2	0	0	logfile

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