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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NPS | 12518 | 2022-12-11 | 2021-02-28 | 3.81 | 3.93 | 3.82 | 3.9 | 0.010 | 1.15 | 6.0 | 0.08 | 11.02 | 0.01 | 2.182 | 1.23 | 0.00 | 2.5 | 97.5 | 0.0 | -1.44 | 0.82 | 0.82 | 2.59 | 3.9 | 0.002 | 0.59 | 0.0 | 0.05 | 12.90 | 0.00 | 1.909 | 2.87 | 0.07 | 2.0 | 98.0 | 0.0 | -0.12 | 0.68 | 0.83 | 0.83 | 2.26 | 55350 | 3732 | 9 | 0 | 0 | 0 | 27681 | logfile |
✔ | 7RXA | 24726 | 2022-12-12 | 2021-08-22 | 3.08 | 3.22 | — | 3.3 | 0.006 | 1.11 | 0.0 | 0.05 | 15.07 | 0.01 | 2.381 | 1.32 | 0.00 | 5.4 | 94.6 | 0.0 | -4.42 | 0.67 | 0.84 | 2.99 | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 13.77 | 0.00 | 2.241 | 2.87 | 0.14 | 4.1 | 95.9 | 0.0 | 0.82 | 0.32 | 0.66 | 0.85 | 2.84 | 8694 | 1156 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 6WWZ | 21950 | 2022-12-12 | 2020-05-09 | 3.34 | 3.53 | — | 3.5 | 0.014 | 1.77 | 0.0 | 0.09 | 13.13 | 0.00 | 2.318 | 2.17 | 0.10 | 4.4 | 95.6 | 0.0 | -3.33 | 0.56 | 0.77 | 2.93 | 3.5 | 0.002 | 0.57 | 0.0 | 0.04 | 15.24 | 0.00 | 2.184 | 2.92 | 0.39 | 2.8 | 97.2 | 0.0 | 0.36 | 1.06 | 0.71 | 0.86 | 2.63 | 9450 | 1211 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PY2 | 13708 | 2022-12-11 | 2021-10-08 | 2.59 | 2.64 | 1.53 | 2.7 | 0.015 | 1.83 | 0.0 | 0.08 | 17.26 | 0.01 | 2.423 | 1.71 | 2.00 | 9.1 | 90.9 | 0.0 | -5.22 | 0.45 | 0.84 | 6.05 | 2.8 | 0.004 | 0.86 | 0.0 | 0.05 | 18.18 | 0.00 | 2.155 | 2.93 | 4.00 | 5.2 | 94.8 | 0.0 | -3.95 | 1.38 | 0.49 | 0.87 | 5.97 | 2152 | 316 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XB1 | 6714 | 2022-12-16 | 2017-03-15 | 3.0 | 3.16 | 2.84 | 3.1 | 0.007 | 0.71 | 0.0 | 0.05 | 10.82 | 0.00 | 2.173 | 4.77 | 0.00 | 2.0 | 98.0 | 0.0 | -6.31 | 0.80 | 0.88 | 4.19 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 18.09 | 0.00 | 2.165 | 2.93 | 3.48 | 2.7 | 97.3 | 0.0 | 3.54 | 0.69 | 0.79 | 0.86 | 2.84 | 30847 | 3720 | 48 | 0 | 0 | 55 | 0 | logfile |
✔ | 6i5A | 4413 | 2022-12-11 | 2018-11-13 | 2.3 | 2.34 | 1.50 | 2.3 | 0.012 | 1.84 | 1.0 | 0.10 | 14.16 | 0.01 | 2.431 | 6.70 | 0.74 | 1.3 | 97.4 | 1.3 | -0.89 | 0.26 | 0.84 | 3.95 | 2.3 | 0.003 | 0.54 | 0.0 | 0.04 | 16.64 | 0.00 | 2.349 | 2.93 | 4.44 | 2.0 | 98.0 | 0.0 | 2.46 | 1.23 | 0.30 | 0.88 | 4.22 | 1206 | 153 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PBS | 13301 | 2022-12-16 | 2021-08-02 | 3.3 | 2.55 | — | 3.2 | 0.005 | 0.71 | 0.0 | 0.05 | 14.69 | 0.01 | 1.778 | 1.72 | 0.25 | 0.7 | 99.3 | 0.0 | -0.18 | 0.65 | 0.77 | 3.13 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 17.28 | 0.00 | 1.786 | 2.93 | 0.06 | 1.8 | 98.2 | 0.0 | 1.47 | 1.34 | 0.70 | 0.81 | 2.46 | 31328 | 1918 | 15 | 30 | 11 | 0 | 15439 | logfile |
✔ | 6XEU | 22150 | 2022-12-12 | 2020-06-13 | 3.2 | 3.84 | — | 3.7 | 0.008 | 0.82 | 4.0 | 0.06 | 15.45 | 0.01 | 2.387 | 2.82 | 2.83 | 11.3 | 88.7 | 0.0 | -2.88 | 0.76 | 0.88 | 3.94 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 15.83 | 0.00 | 2.299 | 2.97 | 0.35 | 4.7 | 95.3 | 0.0 | 0.13 | 0.36 | 0.77 | 0.89 | 3.04 | 10544 | 1312 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7Q8C | 13864 | 2022-12-13 | 2021-11-11 | 2.72 | 2.78 | 2.67 | 2.7 | 0.005 | 0.62 | 0.0 | 0.05 | 10.88 | 0.00 | 1.953 | 1.76 | 0.00 | 3.0 | 97.0 | 0.0 | 0.25 | 0.73 | 0.89 | 5.04 | 2.7 | 0.006 | 0.76 | 0.0 | 0.05 | 15.38 | 0.01 | 1.685 | 2.97 | 1.54 | 3.5 | 96.5 | 0.0 | -0.12 | 0.89 | 0.74 | 0.91 | 4.44 | 14975 | 1850 | 15 | 0 | 10 | 360 | 0 | logfile |
✔ | 7NKJ | 12441 | 2022-12-21 | 2021-02-18 | 2.17 | 2.16 | — | 2.1 | 0.005 | 0.59 | 0.0 | 0.05 | 16.78 | 0.00 | 1.958 | 2.92 | 1.05 | 1.8 | 98.2 | 0.1 | 1.04 | 0.80 | 0.89 | 6.04 | 2.1 | 0.004 | 0.55 | 0.0 | 0.04 | 16.76 | 0.00 | 1.766 | 2.97 | 1.05 | 1.6 | 98.3 | 0.1 | 1.18 | 0.12 | 0.80 | 0.90 | 5.92 | 45605 | 2945 | 20 | 0 | 11 | 516 | 22478 | logfile |
✔ | 7QKW | 14055 | 2022-12-11 | 2021-12-19 | 2.32 | 1.74 | 2.60 | 2.3 | 0.010 | 1.93 | 1.0 | 0.10 | 13.53 | 0.01 | 2.534 | 0.00 | 0.00 | 5.4 | 94.6 | 0.0 | -2.79 | 0.41 | 0.81 | 7.02 | 2.3 | 0.002 | 0.52 | 0.0 | 0.05 | 16.59 | 0.00 | 2.445 | 2.98 | 1.09 | 4.8 | 95.2 | 0.0 | -2.85 | 1.38 | 0.41 | 0.84 | 5.96 | 4707 | 306 | 6 | 0 | 0 | 0 | 2439 | logfile |
✔ | 7PBP | 13298 | 2022-12-16 | 2021-08-02 | 3.2 | 3.11 | — | 3.2 | 0.004 | 0.73 | 0.0 | 0.04 | 14.69 | 0.01 | 1.860 | 1.59 | 0.12 | 1.0 | 99.0 | 0.0 | -0.71 | 0.79 | 0.83 | 2.81 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 16.79 | 0.00 | 1.829 | 2.99 | 0.18 | 1.8 | 98.2 | 0.0 | 1.45 | 0.81 | 0.79 | 0.85 | 2.24 | 32077 | 1968 | 16 | 30 | 9 | 0 | 15818 | logfile |
✔ | 7oDL | 12842 | 2022-12-15 | 2021-04-29 | 3.03 | 2.61 | 2.99 | 2.9 | 0.003 | 0.58 | 0.0 | 0.05 | 14.46 | 0.00 | 2.028 | 2.81 | 0.64 | 5.8 | 94.1 | 0.1 | -1.28 | 0.76 | 0.82 | 3.77 | 2.9 | 0.002 | 0.54 | 0.0 | 0.05 | 15.55 | 0.00 | 2.186 | 3.00 | 0.19 | 5.0 | 95.0 | 0.0 | -0.78 | 1.09 | 0.75 | 0.84 | 3.46 | 24338 | 3066 | 6 | 0 | 33 | 0 | 0 | logfile |
✔ | 7T11 | 25587 | 2022-12-11 | 2021-11-30 | 2.7 | 2.94 | — | 3.0 | 0.004 | 0.61 | 2.0 | 0.04 | 10.76 | 0.00 | 2.107 | 3.59 | 0.27 | 2.4 | 97.6 | 0.0 | 0.96 | 0.60 | 0.74 | 3.90 | 3.0 | 0.002 | 0.53 | 2.0 | 0.04 | 13.63 | 0.00 | 2.228 | 3.01 | 0.80 | 2.5 | 97.5 | 0.0 | 1.28 | 0.42 | 0.62 | 0.79 | 3.29 | 8151 | 1132 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7USA | 26730 | 2022-12-15 | 2022-04-23 | 2.8 | 2.94 | 2.77 | 3.0 | 0.014 | 1.57 | 18.0 | 0.13 | 9.66 | 0.01 | 1.968 | 1.97 | 0.04 | 3.5 | 96.2 | 0.3 | 0.09 | 0.75 | 0.85 | 4.68 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 13.29 | 0.00 | 2.277 | 3.01 | 1.83 | 2.2 | 97.7 | 0.1 | 0.78 | 0.51 | 0.73 | 0.90 | 4.05 | 24307 | 3181 | 33 | 0 | 90 | 0 | 0 | logfile |
✔ | 7Z16 | 14442 | 2022-12-21 | 2022-02-24 | 2.09 | 2.57 | 2.21 | 2.5 | 0.006 | 0.73 | 0.0 | 0.05 | 14.14 | 0.01 | 1.956 | 4.94 | 1.04 | 2.1 | 97.9 | 0.0 | 1.45 | 0.77 | 0.85 | 5.34 | 2.5 | 0.003 | 0.54 | 0.0 | 0.05 | 15.09 | 0.00 | 1.867 | 3.02 | 0.50 | 1.8 | 98.2 | 0.0 | 1.49 | 1.98 | 0.71 | 0.84 | 5.22 | 44690 | 2882 | 20 | 0 | 10 | 6 | 22240 | logfile |
✔ | 8A2R | 15104 | 2022-12-13 | 2022-06-06 | 2.17 | 2.31 | 2.13 | 2.2 | 0.005 | 0.67 | 0.0 | 0.04 | 13.67 | 0.00 | 1.880 | 2.75 | 0.65 | 2.5 | 97.5 | 0.0 | -1.52 | 0.72 | 0.86 | 5.94 | 2.2 | 0.003 | 0.61 | 0.0 | 0.04 | 16.77 | 0.00 | 1.903 | 3.02 | 0.90 | 1.7 | 98.3 | 0.0 | 1.18 | 1.16 | 0.73 | 0.90 | 5.74 | 14990 | 1830 | 15 | 0 | 15 | 480 | 0 | logfile |
✔ | 8D68 | 27220 | 2022-12-13 | 2022-06-06 | 3.36 | 3.13 | 3.28 | 3.2 | 0.008 | 1.06 | 0.0 | 0.06 | 15.51 | 0.01 | 2.212 | 3.37 | 0.00 | 7.0 | 93.0 | 0.0 | -1.43 | 0.70 | 0.84 | 3.63 | 3.3 | 0.004 | 0.65 | 0.0 | 0.05 | 14.85 | 0.00 | 2.161 | 3.03 | 0.07 | 6.9 | 93.1 | 0.0 | -0.47 | 0.31 | 0.69 | 0.84 | 2.78 | 13055 | 1560 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 7RHX | 24470 | 2022-12-15 | 2021-07-19 | 3.23 | 3.49 | 3.31 | 3.4 | 0.004 | 0.79 | 0.0 | 0.05 | 20.49 | 0.01 | 2.289 | 1.05 | 0.00 | 2.0 | 98.0 | 0.0 | -0.38 | 0.75 | 0.84 | 2.43 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 22.04 | 0.00 | 2.119 | 3.03 | 0.00 | 2.8 | 97.2 | 0.0 | 1.32 | 1.07 | 0.76 | 0.87 | 1.58 | 25787 | 1288 | 8 | 168 | 0 | 0 | 12159 | logfile |
✔ | 7PKB | 13467 | 2022-12-13 | 2021-08-25 | 3.2 | 2.68 | 3.08 | 3.1 | 0.008 | 0.90 | 0.0 | 0.14 | 13.28 | 0.01 | 1.950 | 3.97 | 0.00 | 5.1 | 94.8 | 0.1 | -0.98 | 0.72 | 0.85 | 5.32 | 3.2 | 0.003 | 0.69 | 0.0 | 0.14 | 13.57 | 0.00 | 2.003 | 3.04 | 0.00 | 2.9 | 97.1 | 0.0 | -0.31 | 0.58 | 0.73 | 0.87 | 4.70 | 16145 | 1030 | 15 | 0 | 10 | 5 | 7970 | logfile |