Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6L3V	0827	2023-11-17	2019-10-15	2.63	2.90	2.72	2.9	0.009	0.92	0.0	0.04	17.16	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.003	0.60	0.0	0.03	16.70	0.00	2.186	2.31	1.41	0.8	99.2	0.0	2.15	3.58	0.59	0.87	2.86	19416	1206	12	0	6	0	9528	logfile
✔	8ARi	15603	2023-11-15	2022-08-16	3.0	3.68	3.06	3.4	0.003	0.50	0.0	0.04	8.12	0.00	2.254	2.40	0.38	4.2	95.7	0.1	-0.94	0.89	0.88	4.79	3.4	0.004	0.51	0.0	0.04	10.54	0.00	2.127	2.33	0.65	3.6	96.4	0.0	0.14	0.94	0.87	0.92	3.81	63756	8160	58	0	24	0	0	logfile
✔	7T2E	25611	2023-11-13	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	6UFR	20759	2023-11-13	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.005	0.68	0.0	0.06	17.05	0.00	2.401	2.35	3.41	4.9	95.1	0.0	-0.88	0.97	0.52	0.89	5.22	4420	630	20	0	0	90	0	logfile
✔	8Q9J	18283	2023-11-14	2023-08-20	2.96	2.81	3.01	2.7	0.011	1.86	0.0	0.09	10.83	0.01	2.532	0.00	0.00	1.2	98.8	0.0	-1.24	0.26	0.75	6.29	2.9	0.003	0.56	0.0	0.05	16.80	0.00	2.220	2.35	0.26	2.6	97.4	0.0	-1.82	1.38	0.31	0.84	5.61	6822	438	6	0	0	0	3480	logfile
✔	8E49	27884	2023-11-15	2022-08-17	2.05	2.78	2.50	2.5	0.005	0.42	0.0	0.03	12.76	0.02	1.945	1.31	0.85	4.6	95.4	0.0	0.91	0.71	0.91	5.79	2.6	0.005	0.60	0.0	0.04	13.62	0.01	1.890	2.36	1.17	5.2	94.8	0.1	0.08	0.21	0.70	0.92	5.87	115871	1179	11	3016	1	0	41885	logfile
✔	8F6A	28878	2023-11-21	2022-11-16	2.06	3.05	2.14	2.7	0.004	0.69	0.0	0.05	17.55	0.01	2.320	4.08	3.21	3.1	96.9	0.0	1.20	0.80	0.76	4.28	2.7	0.004	0.54	0.0	0.04	16.39	0.00	2.057	2.38	0.63	3.6	96.4	0.0	1.60	0.85	0.81	0.91	4.52	93058	5950	28	0	0	0	47110	logfile
✔	7T10	25586	2023-11-14	2021-11-30	2.5	2.70	—	2.8	0.005	1.00	0.0	0.06	12.36	0.01	2.235	3.61	0.73	3.0	97.0	0.0	0.62	0.64	0.83	4.77	2.8	0.002	0.57	0.0	0.04	13.76	0.00	2.268	2.39	0.73	2.3	97.7	0.0	1.52	0.91	0.64	0.83	3.88	8429	1146	9	0	0	5	0	logfile
✔	7MJQ	23882	2023-11-16	2021-04-20	4.2	4.29	—	4.2	0.009	1.55	0.0	0.15	6.42	0.01	1.552	6.01	0.00	9.4	90.6	0.0	-1.25	0.52	0.66	—	4.2	0.003	0.76	0.0	0.05	6.43	0.00	2.169	2.39	0.00	11.9	88.1	0.0	-2.25	1.83	0.59	0.75	—	14976	2982	13	0	10	0	0	logfile
✔	7Xo3	33335	2023-11-13	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.7	0.003	0.56	0.0	0.05	16.32	0.00	2.293	2.44	3.03	9.8	90.2	0.0	-1.76	2.17	0.48	0.85	5.80	2598	378	6	0	0	0	0	logfile
✔	6iG9	9664	2023-11-17	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.003	0.66	0.0	0.04	5.17	0.00	2.218	2.46	0.00	9.7	90.3	0.0	0.91	1.56	0.87	0.72	—	17122	3386	1	0	0	0	0	logfile
✔	7QER	13938	2023-11-17	2021-12-03	2.2	2.66	2.18	2.3	0.009	0.94	0.0	0.05	14.11	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.002	0.55	0.0	0.04	14.91	0.00	2.235	2.48	2.20	1.3	98.7	0.0	3.46	1.24	0.84	0.89	3.42	19097	2244	36	0	60	305	0	logfile
✔	7LiT	23385	2023-11-17	2021-01-27	2.53	2.69	—	2.8	0.008	0.76	0.0	0.05	13.58	0.00	2.309	1.69	0.44	3.9	96.1	0.0	0.35	0.71	0.85	4.23	2.7	0.003	0.55	0.0	0.04	16.23	0.00	2.168	2.50	1.36	3.3	96.7	0.0	0.89	1.75	0.73	0.88	3.70	126840	15480	60	0	60	0	0	logfile
✔	7XS7	33423	2023-11-15	2022-05-13	3.2	3.43	3.32	3.4	0.004	0.71	0.0	0.04	14.66	0.00	1.946	3.69	0.16	4.2	95.6	0.3	-2.73	0.69	0.86	3.61	3.4	0.003	0.54	0.0	0.04	15.46	0.00	2.165	2.53	0.31	5.0	94.9	0.1	0.11	0.98	0.67	0.87	2.98	12270	1458	4	0	42	0	0	logfile
✔	7BKP	12213	2023-11-15	2021-01-16	2.8	2.78	2.75	2.9	0.009	0.84	0.0	0.05	12.30	0.00	1.824	2.22	0.32	6.5	93.2	0.3	-2.15	0.66	0.84	3.66	2.9	0.002	0.51	0.0	0.04	14.82	0.00	2.160	2.55	1.46	5.0	95.0	0.0	1.30	2.05	0.64	0.86	2.90	12118	689	4	28	3	0	5956	logfile
✔	7R5H	14320	2023-11-14	2022-02-10	2.59	2.63	2.45	2.7	0.011	1.85	4.0	0.11	11.92	0.01	2.519	0.67	0.00	3.2	96.8	0.0	-1.94	0.42	0.84	6.46	2.6	0.005	0.62	0.0	0.05	15.82	0.00	2.515	2.56	2.40	4.7	95.3	0.0	-2.23	1.15	0.42	0.89	5.42	7440	477	6	0	0	0	3786	logfile
✔	8iXJ	35793	2023-11-16	2023-04-01	3.1	3.03	3.07	3.1	0.012	1.45	0.0	0.09	10.47	0.00	2.412	3.04	0.00	0.0	100.0	0.0	3.48	0.67	0.86	2.90	3.1	0.003	0.33	0.0	0.03	13.96	0.00	2.249	2.57	0.29	0.0	100.0	0.0	7.00	1.01	0.66	0.86	1.03	13760	1840	40	0	0	0	0	logfile
✔	7XKH	33251	2023-11-19	2022-04-19	3.1	3.59	2.97	3.3	0.002	0.44	0.0	0.04	12.68	0.00	2.283	2.61	0.00	1.6	98.4	0.0	1.48	0.85	0.87	2.71	3.3	0.003	0.51	0.0	0.04	14.24	0.00	2.214	2.58	0.00	2.4	97.6	0.0	0.83	1.12	0.87	0.91	2.74	25068	3257	9	0	1	0	0	logfile
✔	8P5X	17456	2023-11-14	2023-05-24	2.29	2.20	2.36	1.9	0.013	1.76	0.0	0.09	14.15	0.00	2.250	0.66	0.21	3.1	96.9	0.0	-1.93	0.89	0.90	4.98	2.0	0.003	0.54	0.0	0.04	16.33	0.00	2.003	2.59	0.51	2.1	97.9	0.0	0.77	0.42	0.87	0.88	4.28	55346	7110	18	0	12	0	0	logfile
✔	7YMJ	33930	2023-11-13	2022-07-28	3.35	3.65	3.24	3.6	0.005	0.95	0.0	0.05	14.76	0.01	2.349	1.30	0.00	3.6	96.4	0.0	-3.45	0.64	0.83	2.70	3.6	0.002	0.54	0.0	0.04	15.06	0.00	2.330	2.60	0.31	3.1	96.9	0.0	0.98	0.37	0.62	0.83	2.25	3085	396	3	0	1	0	0	logfile

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