Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NPS	12518	2022-12-11	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.23	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.002	0.59	0.0	0.05	12.90	0.00	1.909	2.87	0.07	2.0	98.0	0.0	-0.12	0.68	0.83	0.83	2.26	55350	3732	9	0	0	0	27681	logfile
✔	7RXA	24726	2022-12-12	2021-08-22	3.08	3.22	—	3.3	0.006	1.11	0.0	0.05	15.07	0.01	2.381	1.32	0.00	5.4	94.6	0.0	-4.42	0.67	0.84	2.99	3.3	0.002	0.55	0.0	0.04	13.77	0.00	2.241	2.87	0.14	4.1	95.9	0.0	0.82	0.32	0.66	0.85	2.84	8694	1156	4	0	8	0	0	logfile
✔	6WWZ	21950	2022-12-12	2020-05-09	3.34	3.53	—	3.5	0.014	1.77	0.0	0.09	13.13	0.00	2.318	2.17	0.10	4.4	95.6	0.0	-3.33	0.56	0.77	2.93	3.5	0.002	0.57	0.0	0.04	15.24	0.00	2.184	2.92	0.39	2.8	97.2	0.0	0.36	1.06	0.71	0.86	2.63	9450	1211	6	0	0	0	0	logfile
✔	7PY2	13708	2022-12-11	2021-10-08	2.59	2.64	1.53	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.004	0.86	0.0	0.05	18.18	0.00	2.155	2.93	4.00	5.2	94.8	0.0	-3.95	1.38	0.49	0.87	5.97	2152	316	4	0	0	0	0	logfile
✔	5XB1	6714	2022-12-16	2017-03-15	3.0	3.16	2.84	3.1	0.007	0.71	0.0	0.05	10.82	0.00	2.173	4.77	0.00	2.0	98.0	0.0	-6.31	0.80	0.88	4.19	3.1	0.003	0.57	0.0	0.04	18.09	0.00	2.165	2.93	3.48	2.7	97.3	0.0	3.54	0.69	0.79	0.86	2.84	30847	3720	48	0	0	55	0	logfile
✔	6i5A	4413	2022-12-11	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✔	7PBS	13301	2022-12-16	2021-08-02	3.3	2.55	—	3.2	0.005	0.71	0.0	0.05	14.69	0.01	1.778	1.72	0.25	0.7	99.3	0.0	-0.18	0.65	0.77	3.13	3.2	0.003	0.54	0.0	0.04	17.28	0.00	1.786	2.93	0.06	1.8	98.2	0.0	1.47	1.34	0.70	0.81	2.46	31328	1918	15	30	11	0	15439	logfile
✔	6XEU	22150	2022-12-12	2020-06-13	3.2	3.84	—	3.7	0.008	0.82	4.0	0.06	15.45	0.01	2.387	2.82	2.83	11.3	88.7	0.0	-2.88	0.76	0.88	3.94	3.7	0.002	0.58	0.0	0.04	15.83	0.00	2.299	2.97	0.35	4.7	95.3	0.0	0.13	0.36	0.77	0.89	3.04	10544	1312	8	0	16	0	0	logfile
✔	7Q8C	13864	2022-12-13	2021-11-11	2.72	2.78	2.67	2.7	0.005	0.62	0.0	0.05	10.88	0.00	1.953	1.76	0.00	3.0	97.0	0.0	0.25	0.73	0.89	5.04	2.7	0.006	0.76	0.0	0.05	15.38	0.01	1.685	2.97	1.54	3.5	96.5	0.0	-0.12	0.89	0.74	0.91	4.44	14975	1850	15	0	10	360	0	logfile
✔	7NKJ	12441	2022-12-21	2021-02-18	2.17	2.16	—	2.1	0.005	0.59	0.0	0.05	16.78	0.00	1.958	2.92	1.05	1.8	98.2	0.1	1.04	0.80	0.89	6.04	2.1	0.004	0.55	0.0	0.04	16.76	0.00	1.766	2.97	1.05	1.6	98.3	0.1	1.18	0.12	0.80	0.90	5.92	45605	2945	20	0	11	516	22478	logfile
✔	7QKW	14055	2022-12-11	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.52	0.0	0.05	16.59	0.00	2.445	2.98	1.09	4.8	95.2	0.0	-2.85	1.38	0.41	0.84	5.96	4707	306	6	0	0	0	2439	logfile
✔	7PBP	13298	2022-12-16	2021-08-02	3.2	3.11	—	3.2	0.004	0.73	0.0	0.04	14.69	0.01	1.860	1.59	0.12	1.0	99.0	0.0	-0.71	0.79	0.83	2.81	3.2	0.003	0.56	0.0	0.04	16.79	0.00	1.829	2.99	0.18	1.8	98.2	0.0	1.45	0.81	0.79	0.85	2.24	32077	1968	16	30	9	0	15818	logfile
✔	7oDL	12842	2022-12-15	2021-04-29	3.03	2.61	2.99	2.9	0.003	0.58	0.0	0.05	14.46	0.00	2.028	2.81	0.64	5.8	94.1	0.1	-1.28	0.76	0.82	3.77	2.9	0.002	0.54	0.0	0.05	15.55	0.00	2.186	3.00	0.19	5.0	95.0	0.0	-0.78	1.09	0.75	0.84	3.46	24338	3066	6	0	33	0	0	logfile
✔	7T11	25587	2022-12-11	2021-11-30	2.7	2.94	—	3.0	0.004	0.61	2.0	0.04	10.76	0.00	2.107	3.59	0.27	2.4	97.6	0.0	0.96	0.60	0.74	3.90	3.0	0.002	0.53	2.0	0.04	13.63	0.00	2.228	3.01	0.80	2.5	97.5	0.0	1.28	0.42	0.62	0.79	3.29	8151	1132	6	0	2	0	0	logfile
✔	7USA	26730	2022-12-15	2022-04-23	2.8	2.94	2.77	3.0	0.014	1.57	18.0	0.13	9.66	0.01	1.968	1.97	0.04	3.5	96.2	0.3	0.09	0.75	0.85	4.68	3.0	0.003	0.57	0.0	0.04	13.29	0.00	2.277	3.01	1.83	2.2	97.7	0.1	0.78	0.51	0.73	0.90	4.05	24307	3181	33	0	90	0	0	logfile
✔	7Z16	14442	2022-12-21	2022-02-24	2.09	2.57	2.21	2.5	0.006	0.73	0.0	0.05	14.14	0.01	1.956	4.94	1.04	2.1	97.9	0.0	1.45	0.77	0.85	5.34	2.5	0.003	0.54	0.0	0.05	15.09	0.00	1.867	3.02	0.50	1.8	98.2	0.0	1.49	1.98	0.71	0.84	5.22	44690	2882	20	0	10	6	22240	logfile
✔	8A2R	15104	2022-12-13	2022-06-06	2.17	2.31	2.13	2.2	0.005	0.67	0.0	0.04	13.67	0.00	1.880	2.75	0.65	2.5	97.5	0.0	-1.52	0.72	0.86	5.94	2.2	0.003	0.61	0.0	0.04	16.77	0.00	1.903	3.02	0.90	1.7	98.3	0.0	1.18	1.16	0.73	0.90	5.74	14990	1830	15	0	15	480	0	logfile
✔	8D68	27220	2022-12-13	2022-06-06	3.36	3.13	3.28	3.2	0.008	1.06	0.0	0.06	15.51	0.01	2.212	3.37	0.00	7.0	93.0	0.0	-1.43	0.70	0.84	3.63	3.3	0.004	0.65	0.0	0.05	14.85	0.00	2.161	3.03	0.07	6.9	93.1	0.0	-0.47	0.31	0.69	0.84	2.78	13055	1560	10	0	5	0	0	logfile
✔	7RHX	24470	2022-12-15	2021-07-19	3.23	3.49	3.31	3.4	0.004	0.79	0.0	0.05	20.49	0.01	2.289	1.05	0.00	2.0	98.0	0.0	-0.38	0.75	0.84	2.43	3.4	0.003	0.60	0.0	0.04	22.04	0.00	2.119	3.03	0.00	2.8	97.2	0.0	1.32	1.07	0.76	0.87	1.58	25787	1288	8	168	0	0	12159	logfile
✔	7PKB	13467	2022-12-13	2021-08-25	3.2	2.68	3.08	3.1	0.008	0.90	0.0	0.14	13.28	0.01	1.950	3.97	0.00	5.1	94.8	0.1	-0.98	0.72	0.85	5.32	3.2	0.003	0.69	0.0	0.14	13.57	0.00	2.003	3.04	0.00	2.9	97.1	0.0	-0.31	0.58	0.73	0.87	4.70	16145	1030	15	0	10	5	7970	logfile

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