Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZB4	11144	2023-04-27	2020-06-06	3.03	3.12	3.02	3.1	0.007	0.69	0.0	0.05	15.93	0.01	1.814	4.85	3.84	8.2	91.7	0.1	-4.11	0.75	0.83	3.79	3.1	0.005	0.67	0.0	0.05	16.28	0.00	2.119	3.57	0.41	7.9	92.1	0.0	-1.77	1.86	0.77	0.86	3.80	24841	3133	7	0	30	0	0	logfile
✔	8AMX	15528	2023-04-23	2022-08-04	2.55	2.79	2.59	2.7	0.004	0.63	0.0	0.04	11.93	0.01	2.414	2.40	0.00	2.4	97.2	0.3	2.10	0.64	0.86	3.96	2.7	0.002	0.54	0.0	0.04	15.11	0.00	2.281	3.58	0.63	3.2	96.4	0.3	3.03	0.26	0.66	0.88	3.00	15633	2024	16	0	0	57	0	logfile
✔	7Z7i	14533	2023-04-23	2022-03-15	3.5	4.18	3.47	3.8	0.014	1.08	0.0	0.07	14.35	0.01	1.952	3.82	0.00	5.7	94.3	0.0	-2.47	0.75	0.81	3.12	3.8	0.003	0.69	0.0	0.04	15.34	0.00	1.924	3.58	0.19	3.6	96.4	0.0	0.04	1.14	0.76	0.83	2.40	14815	1855	10	0	15	0	0	logfile
✔	7XKR	33265	2023-04-27	2022-04-20	2.6	3.37	2.59	3.0	0.003	0.54	0.0	0.04	12.53	0.00	2.006	3.17	0.00	1.6	98.4	0.0	1.93	0.86	0.90	3.82	2.9	0.004	0.55	0.0	0.04	14.11	0.00	1.934	3.59	0.75	1.9	98.1	0.0	1.44	0.82	0.87	0.93	3.86	25246	3257	14	0	11	0	0	logfile
✔	7PKG	13471	2023-04-23	2021-08-25	3.3	2.97	3.19	3.2	0.005	0.85	0.0	0.17	13.68	0.01	2.156	4.65	0.00	5.5	94.5	0.0	-1.10	0.69	0.84	5.60	3.2	0.003	0.75	0.0	0.16	14.45	0.00	2.029	3.59	0.00	2.5	97.5	0.0	-0.58	0.57	0.69	0.86	4.91	16155	1030	15	0	10	5	7980	logfile
✔	8H14	34424	2023-04-27	2022-09-30	3.39	3.39	3.33	3.4	0.005	0.95	6.0	0.06	13.84	0.01	2.177	2.50	1.35	3.6	96.4	0.0	-0.84	0.78	0.84	2.92	3.4	0.003	0.55	0.0	0.04	14.67	0.00	2.212	3.63	0.41	2.6	97.4	0.0	-0.02	0.39	0.79	0.87	2.92	24750	3087	6	0	45	0	0	logfile
✔	7SBV	24989	2023-04-29	2021-09-26	3.1	3.30	2.97	3.1	0.023	1.76	5.0	0.12	10.19	0.01	2.276	0.67	0.23	2.4	97.6	0.0	-0.22	0.85	0.89	4.50	3.1	0.006	0.66	0.0	0.04	12.59	0.00	2.218	3.64	0.23	3.6	96.4	0.0	-0.14	1.20	0.85	0.91	3.96	29339	3531	24	0	268	0	0	logfile
✔	7JLP	22376	2023-04-22	2020-07-30	3.4	3.51	3.29	3.5	0.009	1.27	0.0	0.04	17.05	0.02	2.252	3.73	0.70	4.6	95.4	0.0	-2.07	0.72	0.87	3.32	3.5	0.003	0.52	0.0	0.04	16.90	0.00	2.202	3.65	0.31	4.0	96.0	0.0	-0.15	0.44	0.72	0.89	3.06	12891	1455	6	0	45	0	0	logfile
✔	7MTS	23996	2023-04-23	2021-05-13	3.2	3.09	—	3.0	0.007	0.77	0.0	0.05	13.11	0.01	2.213	4.48	0.13	3.1	96.9	0.0	0.41	0.83	0.84	2.92	3.0	0.002	0.51	0.0	0.04	14.25	0.00	2.164	3.65	0.13	2.5	97.5	0.0	0.61	0.27	0.83	0.86	2.40	16068	2150	7	0	3	0	0	logfile
✔	7Ji0	22341	2023-04-20	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.94	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.002	0.47	0.0	0.04	15.32	0.00	2.210	3.66	2.96	3.8	96.2	0.0	1.47	0.45	0.70	0.83	3.46	3556	432	4	0	0	0	0	logfile
✔	7SBX	24991	2023-04-29	2021-09-26	3.0	3.17	2.90	3.0	0.023	1.69	0.0	0.10	10.18	0.01	2.267	1.03	0.26	1.7	98.3	0.0	0.54	0.86	0.91	4.90	3.0	0.003	0.59	0.0	0.04	13.27	0.00	2.198	3.67	1.23	2.4	97.6	0.0	0.52	1.18	0.84	0.91	4.07	29599	3543	27	0	291	0	0	logfile
✔	6ZBC	11150	2023-04-25	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	1.08	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.49	0.0	0.03	15.14	0.00	2.071	3.69	0.18	1.4	98.6	0.0	4.05	0.84	0.85	0.81	1.66	19534	1160	4	0	0	0	9902	logfile
✔	7S9V	24938	2023-04-23	2021-09-21	3.3	3.25	—	3.4	0.007	0.86	0.0	0.05	13.96	0.01	2.257	2.04	0.00	5.1	94.9	0.0	-1.75	0.83	0.82	2.23	3.4	0.002	0.53	0.0	0.04	15.36	0.00	2.200	3.70	0.20	3.1	96.9	0.0	-0.13	1.19	0.83	0.83	2.05	14286	1825	3	0	1	0	0	logfile
✔	8B01	15775	2023-04-20	2022-09-06	3.03	3.65	3.02	3.5	0.004	0.60	0.0	0.04	13.05	0.00	2.217	2.82	0.53	2.9	97.1	0.0	2.16	0.67	0.82	2.94	3.5	0.003	0.53	0.0	0.04	14.65	0.00	2.223	3.70	0.35	1.8	98.2	0.0	1.95	0.44	0.71	0.86	2.82	5478	684	5	0	15	0	0	logfile
✔	7TLY	25990	2023-04-19	2022-01-19	3.0	3.01	2.93	3.0	0.010	1.32	2.0	0.08	9.97	0.00	2.556	1.69	0.00	2.5	97.5	0.0	0.36	0.64	0.76	4.98	3.0	0.003	0.62	0.0	0.04	13.83	0.00	2.186	3.71	2.81	3.3	96.7	0.0	-0.93	1.02	0.68	0.82	4.76	3105	408	4	0	4	0	0	logfile
✔	6WCB	21605	2023-04-22	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.50	0.0	0.04	15.55	0.00	2.072	3.71	0.16	1.7	98.3	0.0	3.40	1.29	0.54	0.79	2.46	11647	734	6	0	7	40	5904	logfile
✔	7Z4W	14509	2023-04-21	2022-03-05	2.7	2.53	—	2.5	0.006	0.89	2.0	0.06	14.33	0.01	2.223	2.01	0.16	3.7	96.2	0.1	-1.99	0.74	0.84	4.49	2.5	0.002	0.56	0.0	0.04	16.68	0.00	2.159	3.71	1.06	3.4	96.6	0.0	1.17	0.83	0.74	0.86	3.88	58942	7242	60	0	0	406	0	logfile
✔	8D65	27217	2023-04-22	2022-06-06	3.47	3.58	3.37	3.5	0.010	1.03	0.0	0.07	15.70	0.01	1.871	9.16	0.00	4.9	95.1	0.0	-3.22	0.69	0.83	3.43	3.6	0.003	0.52	0.0	0.04	14.74	0.00	2.279	3.72	0.07	3.2	96.8	0.0	0.33	0.49	0.71	0.86	3.32	12780	1535	10	0	5	0	0	logfile
✔	7SZi	25567	2023-04-20	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.004	0.54	0.0	0.04	14.28	0.00	2.186	3.74	0.96	3.8	96.1	0.1	0.05	0.24	0.72	0.88	5.17	8089	1038	4	0	0	0	0	logfile
✔	7LiM	23383	2023-04-26	2021-01-27	2.75	2.92	—	2.9	0.007	1.05	60.0	0.06	15.45	0.01	2.436	3.47	3.49	3.5	96.5	0.0	-2.97	0.74	0.84	3.83	3.0	0.005	0.87	0.0	0.05	18.05	0.01	2.272	3.74	2.40	3.8	96.2	0.0	-2.46	0.30	0.75	0.86	2.97	127440	15480	60	0	60	0	0	logfile

• ← previous
• Page 7 of 372
• next →