Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S8N	24898	2022-12-11	2021-09-18	2.9	2.20	2.92	2.1	0.012	0.90	0.0	0.06	13.04	0.01	2.202	4.16	0.00	5.1	94.9	0.0	-0.33	0.79	0.80	3.96	2.0	0.003	0.55	0.0	0.04	15.95	0.00	2.223	3.40	0.73	2.3	97.7	0.0	0.94	1.01	0.82	0.82	2.91	8154	1090	6	0	1	0	0	logfile
✔	7PKF	13470	2022-12-16	2021-08-25	2.8	2.64	2.80	2.8	0.004	0.90	0.0	0.16	13.32	0.01	1.918	4.90	0.00	4.3	95.7	0.0	-0.68	0.72	0.86	5.63	2.7	0.003	0.76	0.0	0.16	14.81	0.00	2.081	3.41	0.72	1.9	98.1	0.0	-0.10	1.05	0.73	0.88	5.04	32310	2060	30	0	20	10	15960	logfile
✔	6HYP	0309	2022-12-12	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.002	0.67	0.0	0.04	8.23	0.00	2.173	3.43	0.00	7.0	92.9	0.1	-1.16	0.61	0.76	0.73	—	12392	2082	1	0	192	0	0	logfile
✔	7STN	25434	2022-12-15	2021-11-14	3.19	3.43	—	3.4	0.009	0.75	0.0	0.04	9.95	0.00	2.366	1.05	0.15	2.2	97.8	0.0	2.30	0.66	0.80	3.21	3.4	0.005	0.53	0.0	0.04	12.87	0.00	2.118	3.43	0.15	4.9	94.9	0.1	1.65	1.29	0.64	0.83	2.87	25188	1580	4	0	10	0	12256	logfile
✔	8H0X	34417	2022-12-15	2022-09-30	2.57	2.80	2.62	2.7	0.008	0.90	0.0	0.06	12.63	0.01	2.257	1.82	1.11	3.3	96.7	0.0	-0.82	0.81	0.86	3.97	2.7	0.003	0.59	0.0	0.05	14.25	0.00	2.198	3.43	1.78	3.0	97.0	0.0	0.00	1.17	0.82	0.88	3.72	25122	3117	6	0	48	0	0	logfile
✔	7SiP	25147	2022-12-11	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	16.74	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.003	0.48	0.0	0.04	15.60	0.00	2.203	3.43	1.74	0.7	99.3	0.0	1.27	0.99	0.59	0.83	2.64	7560	892	12	0	36	20	0	logfile
✔	7TU7	26128	2022-12-20	2022-02-02	2.5	2.05	2.51	1.9	0.010	0.82	0.0	0.04	17.90	0.00	1.947	2.34	0.92	2.5	97.5	0.0	0.68	0.81	0.81	3.84	1.9	0.005	0.54	0.0	0.04	17.26	0.00	1.884	3.44	1.22	2.6	97.4	0.0	1.06	0.34	0.84	0.85	3.95	19932	2586	12	0	24	0	0	logfile
✔	6XEV	22154	2022-12-12	2020-06-14	3.5	3.83	—	3.7	0.006	0.93	0.0	0.05	16.46	0.00	2.310	11.71	5.13	8.3	91.7	0.0	-2.90	0.74	0.87	2.75	3.7	0.003	0.58	0.0	0.04	15.61	0.00	2.272	3.44	0.00	5.4	94.6	0.0	0.63	0.44	0.76	0.90	2.54	10545	1312	8	0	25	0	0	logfile
✔	6RLB	4918	2022-12-14	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.2	0.003	0.72	0.0	0.04	5.19	0.00	2.243	3.44	0.00	11.3	88.6	0.0	-0.76	1.85	0.86	0.66	—	20407	4122	14	0	0	0	0	logfile
✔	7B16	11979	2022-12-14	2020-11-23	3.15	3.24	—	3.2	0.012	0.84	0.0	0.05	13.83	0.01	2.239	4.74	0.00	6.1	93.9	0.0	-1.02	0.73	0.85	3.32	3.2	0.002	0.51	0.0	0.04	15.32	0.00	2.331	3.45	0.09	3.4	96.6	0.0	1.63	0.99	0.71	0.86	2.30	21152	2572	8	0	12	0	0	logfile
✔	7US6	26727	2022-12-15	2022-04-23	3.8	3.39	3.16	3.4	0.014	1.46	12.0	0.11	9.56	0.01	2.101	1.97	0.45	2.7	96.9	0.4	0.23	0.72	0.84	5.29	3.4	0.004	0.60	0.0	0.04	12.38	0.00	2.201	3.45	0.25	2.2	97.7	0.1	0.54	1.76	0.74	0.86	4.35	23747	3159	32	0	107	0	0	logfile
✔	6ZBL	11157	2022-12-20	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.002	0.46	0.0	0.03	15.56	0.00	2.022	3.45	0.09	0.9	99.1	0.0	4.18	1.33	0.88	0.82	0.90	39074	2326	4	0	0	0	19788	logfile
✔	7oJ5	12938	2022-12-19	2021-05-13	2.4	2.43	—	2.4	0.002	0.53	0.0	0.04	16.61	0.00	2.177	1.81	1.95	1.6	98.4	0.0	-0.94	0.76	0.87	3.97	2.4	0.004	0.83	0.0	0.05	16.82	0.00	2.124	3.47	1.30	2.7	97.3	0.0	0.60	0.34	0.78	0.89	4.75	35323	4416	72	0	48	931	0	logfile
✔	8EiQ	28161	2022-12-12	2022-09-15	3.0	2.87	3.05	3.2	0.006	1.06	0.0	0.04	12.41	0.01	1.936	1.40	1.78	1.3	98.7	0.0	-1.39	0.65	0.87	3.70	3.1	0.003	0.53	0.0	0.04	16.27	0.00	1.956	3.47	2.67	2.3	97.7	0.0	0.61	1.10	0.66	0.87	2.43	9578	1162	3	0	25	0	0	logfile
✔	8ERR	28559	2022-12-15	2022-10-12	3.1	3.29	3.06	3.3	0.010	1.32	2.0	0.08	10.01	0.01	2.346	2.40	0.88	3.0	96.7	0.3	0.26	0.73	0.78	4.14	3.3	0.003	0.61	0.0	0.05	12.66	0.00	2.174	3.48	0.10	3.2	96.8	0.0	0.59	1.52	0.72	0.75	3.88	25780	3742	13	0	50	0	0	logfile
✔	7Z7i	14533	2022-12-13	2022-03-15	3.5	4.18	3.47	3.8	0.014	1.07	0.0	0.07	14.69	0.01	1.952	3.82	0.00	5.7	94.3	0.0	-2.47	0.75	0.81	3.12	3.8	0.003	0.68	0.0	0.04	15.62	0.00	1.944	3.48	0.19	3.0	97.0	0.0	0.14	0.70	0.75	0.83	2.54	14815	1855	10	0	15	0	0	logfile
✔	7U46	26330	2022-12-15	2022-02-28	2.68	3.21	2.68	3.1	0.011	0.79	0.0	0.06	27.18	0.01	2.200	4.23	0.77	3.1	96.9	0.0	-0.24	0.60	0.79	4.78	3.1	0.004	0.64	0.0	0.04	27.79	0.00	2.042	3.49	1.15	2.5	97.5	0.0	1.71	0.47	0.60	0.80	3.53	24375	925	11	290	0	0	11015	logfile
✔	7MQE	23944	2022-12-14	2021-05-05	3.69	3.22	3.67	3.5	0.008	0.84	0.0	0.06	13.45	0.00	2.308	1.87	0.77	1.7	98.3	0.0	0.67	0.75	0.81	3.89	3.5	0.002	0.50	0.0	0.04	14.02	0.00	2.257	3.49	0.00	1.4	98.6	0.0	1.35	0.42	0.79	0.83	3.46	12163	1629	16	16	0	0	0	logfile
✔	7M05	23609	2022-12-12	2021-03-10	2.39	2.66	2.49	2.6	0.013	1.00	0.0	0.06	14.78	0.01	2.064	3.94	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.003	0.59	0.0	0.05	16.31	0.00	2.054	3.50	1.00	3.1	96.8	0.1	0.36	1.28	0.79	0.84	3.90	57152	3636	12	0	4	0	28188	logfile
✔	7R5H	14320	2022-12-11	2022-02-10	2.59	2.63	2.45	2.7	0.011	1.85	4.0	0.11	11.92	0.01	2.519	1.35	0.00	3.2	96.8	0.0	-1.94	0.42	0.84	6.46	2.7	0.004	0.61	0.0	0.05	15.92	0.00	2.501	3.50	3.36	5.2	94.8	0.0	-2.19	1.14	0.42	0.89	5.63	7440	477	6	0	0	0	3786	logfile

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