Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6U68	20662	2023-08-11	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.003	0.71	0.0	0.05	4.13	0.00	2.325	3.21	0.00	6.1	93.9	0.0	-0.04	1.78	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	8D68	27220	2023-08-13	2022-06-06	3.36	3.13	3.28	3.2	0.008	1.06	0.0	0.06	15.51	0.01	2.212	3.37	0.00	7.0	93.0	0.0	-1.43	0.70	0.84	3.63	3.2	0.005	0.68	0.0	0.05	15.03	0.00	2.171	3.22	0.14	7.1	92.9	0.0	-0.63	0.30	0.70	0.83	2.87	13055	1560	10	0	5	0	0	logfile
✔	7UPA	26659	2023-08-14	2022-04-14	2.5	2.96	2.48	2.8	0.003	0.65	0.0	0.05	14.87	0.00	2.227	1.94	0.96	3.8	96.2	0.0	0.34	0.83	0.85	3.76	2.8	0.007	0.78	0.0	0.05	15.60	0.01	2.103	3.22	2.03	4.3	95.7	0.0	0.24	1.13	0.84	0.88	3.79	15745	2016	12	0	12	0	0	logfile
✔	6SAG	10130	2023-08-09	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.66	0.0	0.04	15.32	0.01	2.026	3.22	1.43	2.9	97.1	0.0	1.37	0.73	0.60	0.90	6.95	54080	6120	240	120	240	2840	0	logfile
✔	7Lii	23379	2023-08-17	2021-01-27	3.55	3.83	—	3.7	0.007	0.90	0.0	0.06	13.86	0.00	2.299	5.65	0.87	9.9	90.1	0.0	-2.72	0.82	0.84	2.16	3.7	0.006	0.75	0.0	0.05	15.30	0.00	2.260	3.23	0.42	10.3	89.7	0.0	-2.13	0.35	0.83	0.84	1.83	127320	15480	60	0	60	0	0	logfile
✔	7US6	26727	2023-08-17	2022-04-23	3.8	3.39	3.16	3.4	0.015	1.49	12.0	0.11	9.61	0.01	2.101	1.86	0.45	2.7	96.9	0.4	0.23	0.72	0.84	5.29	3.4	0.004	0.63	0.0	0.04	12.83	0.00	2.206	3.23	0.35	2.2	97.7	0.1	0.46	1.76	0.75	0.86	4.39	23747	3159	32	0	107	0	0	logfile
✔	7XKT	33270	2023-08-24	2022-04-20	2.2	2.42	2.32	2.4	0.029	1.85	0.0	0.12	18.94	0.01	2.223	2.63	1.33	1.2	98.8	0.0	1.53	0.59	0.82	4.13	2.4	0.002	0.57	0.0	0.04	16.83	0.00	2.157	3.24	0.22	2.5	97.5	0.0	4.54	1.26	0.56	0.81	4.01	34488	1992	36	0	108	444	16008	logfile
✔	7QKL	14046	2023-08-09	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.62	0.0	0.05	17.01	0.00	2.552	3.25	0.25	2.7	97.3	0.0	-1.29	2.03	0.44	0.91	7.62	3468	456	6	0	0	0	0	logfile
✔	7MUE	24006	2023-08-25	2021-05-14	2.8	2.99	—	2.9	0.004	0.78	0.0	0.05	13.97	0.01	2.345	1.38	0.00	3.1	96.9	0.0	-1.29	0.83	0.88	3.94	2.9	0.006	0.66	0.0	0.05	16.52	0.00	2.269	3.26	0.78	3.7	96.3	0.0	1.47	0.46	0.83	0.90	3.54	40266	4626	72	0	864	0	0	logfile
✔	7UHC	26512	2023-08-17	2022-03-26	3.1	3.68	3.18	3.5	0.010	1.33	0.0	0.08	9.98	0.00	2.551	0.55	0.31	2.6	97.3	0.1	0.29	0.79	0.80	4.24	3.5	0.002	0.55	0.0	0.04	12.87	0.00	2.172	3.26	0.05	1.9	98.1	0.0	1.33	0.56	0.75	0.80	3.90	23136	3192	21	0	60	0	0	logfile
✔	7LZE	23605	2023-08-10	2021-03-09	3.23	3.26	3.28	3.6	0.003	0.45	0.0	0.04	13.89	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.5	0.004	0.58	0.0	0.04	14.97	0.00	2.153	3.27	0.00	7.7	92.3	0.0	-0.99	1.12	0.77	0.85	2.67	7842	1011	9	0	9	0	0	logfile
✔	6ZBL	11157	2023-08-24	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.002	0.46	0.0	0.03	15.45	0.00	2.035	3.28	0.00	1.0	99.0	0.0	4.27	1.71	0.88	0.82	1.00	39074	2326	4	0	0	0	19788	logfile
✔	7RGL	24451	2023-08-27	2021-07-15	2.4	2.51	—	2.4	0.013	1.20	0.0	0.06	15.88	0.01	2.317	3.77	3.66	3.7	96.2	0.2	-1.40	0.65	0.88	5.76	2.4	0.003	0.55	0.0	0.04	16.03	0.00	1.994	3.28	1.28	3.5	96.5	0.0	0.39	0.96	0.66	0.89	5.56	50936	3328	16	0	16	0	25408	logfile
✔	6T72	10389	2023-08-19	2019-10-21	3.7	3.79	—	3.8	0.008	1.55	0.0	0.11	14.78	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.002	0.55	0.0	0.03	15.25	0.00	2.116	3.29	0.38	2.0	98.0	0.0	1.85	1.24	0.78	0.87	1.54	26278	3388	42	0	210	0	0	logfile
✔	7RQU	24636	2023-08-23	2021-08-08	3.05	3.32	—	3.3	0.012	1.15	0.0	0.06	17.86	0.00	2.334	3.79	0.00	3.2	96.8	0.0	1.69	0.63	0.76	2.73	3.3	0.003	0.45	0.0	0.03	15.71	0.00	2.351	3.30	0.42	3.7	96.3	0.0	1.99	0.26	0.64	0.80	2.66	35602	2416	8	0	38	0	16568	logfile
✔	7WCM	32424	2023-08-10	2021-12-20	2.33	2.14	—	2.2	0.005	0.70	0.0	0.16	14.13	0.00	2.281	3.66	0.00	2.5	97.5	0.0	1.05	0.64	0.84	4.03	2.2	0.002	0.55	0.0	0.04	15.98	0.00	2.281	3.30	1.02	2.0	98.0	0.0	1.56	0.31	0.63	0.87	4.04	8232	1047	5	0	1	0	0	logfile
✔	6VPS	21316	2023-08-09	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.003	0.51	0.0	0.03	20.10	0.00	2.351	3.30	1.31	6.9	93.1	0.0	-3.83	1.19	0.47	0.87	6.39	2736	279	9	0	0	0	0	logfile
✔	7ZXP	15013	2023-08-15	2022-05-22	2.39	2.72	2.35	2.5	0.002	0.42	0.0	0.04	14.73	0.00	2.332	3.46	1.17	1.1	98.9	0.0	4.20	0.72	0.87	3.52	2.6	0.003	0.42	0.0	0.04	15.58	0.00	2.308	3.30	2.44	1.1	98.9	0.0	4.85	0.89	0.64	0.90	3.39	18420	2292	12	0	0	0	0	logfile
✔	7U66	26361	2023-08-26	2022-03-03	3.1	2.19	3.03	2.0	0.009	0.78	0.0	0.05	14.14	0.00	2.105	2.81	0.92	3.5	96.3	0.2	-0.05	0.78	0.78	3.54	2.0	0.005	0.57	0.0	0.04	15.66	0.00	2.047	3.31	0.42	3.1	96.9	0.0	0.80	1.01	0.80	0.81	2.98	26664	3348	24	0	12	0	0	logfile
✔	7STN	25434	2023-08-18	2021-11-14	3.19	3.43	—	3.4	0.008	0.75	0.0	0.04	9.95	0.00	2.366	1.05	0.15	2.2	97.8	0.0	2.30	0.66	0.80	3.21	3.4	0.004	0.49	0.0	0.04	12.77	0.00	2.129	3.31	0.00	4.2	95.8	0.0	1.91	1.29	0.64	0.82	2.88	25188	1580	4	0	10	0	12256	logfile

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