Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NA7	24267	2023-04-21	2021-06-20	2.7	2.07	—	2.0	0.006	1.04	5.0	0.22	12.93	0.01	2.178	7.05	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	1.9	0.004	0.79	0.0	0.07	15.85	0.00	2.129	9.26	2.34	2.5	97.5	0.0	0.49	0.54	0.81	0.82	3.65	9036	1142	7	0	2	0	0	logfile
✔	7L1S	23117	2023-04-26	2020-12-15	3.6	2.22	—	2.3	0.011	1.81	37.0	0.12	14.05	0.01	2.011	4.65	4.07	3.3	96.6	0.2	-0.43	0.62	0.68	1.03	1.9	0.003	0.84	0.0	0.05	17.89	0.01	1.910	18.19	0.78	4.3	95.7	0.0	-0.16	1.69	0.65	0.69	0.79	24176	3118	12	0	11	0	0	logfile
✔	7NJ1	12369	2023-04-22	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.26	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	1.9	0.004	0.76	0.0	0.04	16.51	0.00	2.141	11.13	1.36	6.1	93.7	0.1	0.95	0.58	0.77	0.76	1.93	11096	1501	2	0	0	0	0	logfile
✔	7USL	26738	2023-04-28	2022-04-25	2.7	2.28	—	1.9	0.004	0.61	0.0	0.05	13.68	0.00	2.106	5.30	0.00	3.2	96.8	0.0	-0.47	0.75	0.73	3.51	1.9	0.006	0.73	0.0	0.05	16.01	0.01	2.094	7.90	2.39	4.5	95.5	0.0	-0.76	0.37	0.78	0.78	3.09	19065	2464	10	0	49	0	0	logfile
✔	7o6Q	12740	2023-04-20	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.70	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7S8o	24899	2023-04-20	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.002	0.53	0.0	0.04	15.63	0.00	2.207	3.18	0.92	4.4	95.6	0.0	1.05	0.40	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	6Xi8	22191	2023-04-20	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.20	0.01	1.333	6.59	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.004	0.90	0.0	0.05	17.20	0.01	2.175	17.94	0.97	9.0	91.0	0.0	-2.43	1.23	0.68	0.64	0.82	5022	636	4	0	2	0	0	logfile
✔	7RCV	24407	2023-04-20	2021-07-08	2.01	1.78	—	1.9	0.024	2.38	0.0	0.11	20.31	0.01	1.915	13.94	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.007	0.98	0.0	0.06	19.24	0.01	1.984	13.17	1.79	3.0	97.0	0.0	0.41	0.91	0.81	0.84	5.30	54656	5544	114	0	228	1236	0	logfile
✔	7WiC	32528	2023-04-21	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.57	0.00	2.173	7.26	1.11	3.1	96.9	0.0	1.17	0.37	0.78	0.80	3.11	9048	1158	6	0	0	0	0	logfile
✔	7MKM	23899	2023-04-20	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.14	0.01	2.177	7.69	0.00	2.8	97.2	0.0	-1.30	0.52	0.58	1.72	1.9	0.003	0.79	0.0	0.04	15.05	0.00	2.257	11.38	0.29	5.8	94.2	0.0	-2.36	0.60	0.53	0.62	1.67	3192	406	4	0	1	0	0	logfile
✔	8EA0	27970	2023-04-19	2022-08-27	2.56	2.05	2.66	1.9	0.003	0.55	0.0	0.04	12.24	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.003	0.56	0.0	0.04	15.18	0.00	2.051	8.02	0.84	5.3	94.7	0.0	1.64	0.46	0.74	0.80	3.17	2286	285	1	0	2	0	0	logfile
✔	7EFC	31083	2023-04-20	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	15.03	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.003	0.69	0.0	0.04	14.60	0.00	1.907	5.77	0.54	2.5	97.5	0.0	0.68	0.91	0.80	0.85	5.94	4004	480	4	0	4	156	0	logfile
✔	6ZGL	11210	2023-04-23	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✔	8E9Y	27968	2023-04-20	2022-08-27	2.79	2.12	2.79	1.9	0.005	0.81	0.0	0.05	13.31	0.00	2.217	12.62	0.12	5.2	94.8	0.0	-1.06	0.76	0.75	3.19	1.9	0.003	0.59	0.0	0.04	15.56	0.00	2.203	9.72	1.73	4.1	95.8	0.1	-0.25	0.36	0.76	0.76	2.63	8479	1123	6	0	1	0	0	logfile
✔	7N5E	24187	2023-04-24	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.36	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.9	0.003	0.58	0.0	0.04	16.11	0.00	2.127	6.31	1.10	1.8	98.2	0.0	2.74	0.58	0.78	0.79	3.16	17915	2176	14	0	7	0	0	logfile
✔	8E9X	27967	2023-04-20	2022-08-27	2.7	2.10	2.72	1.9	0.004	0.60	0.0	0.04	12.62	0.00	2.200	6.28	0.00	4.2	95.8	0.0	-0.15	0.78	0.79	3.99	1.9	0.004	0.56	0.0	0.04	15.26	0.00	2.233	7.19	1.61	3.8	96.2	0.0	0.55	0.34	0.80	0.82	3.68	8380	1109	6	0	1	0	0	logfile
✔	7XSR	33432	2023-04-24	2022-05-15	2.97	2.20	2.91	2.0	0.007	0.97	0.0	0.07	17.32	0.01	2.268	3.17	3.94	5.7	94.2	0.1	-2.57	0.80	0.79	2.87	1.9	0.003	0.62	0.0	0.04	18.51	0.00	2.168	6.39	3.19	5.3	94.7	0.1	0.11	0.56	0.80	0.82	2.69	16907	1963	5	49	4	0	0	logfile
✔	8E9Z	27969	2023-04-20	2022-08-27	2.69	2.09	2.64	1.9	0.004	0.80	2.0	0.05	15.12	0.01	2.248	9.60	0.34	3.2	96.8	0.0	-1.79	0.79	0.79	2.55	1.9	0.003	0.57	0.0	0.04	16.07	0.00	1.969	7.33	1.49	3.2	96.8	0.0	0.95	0.35	0.79	0.80	3.01	8566	1129	6	0	2	0	0	logfile
✔	7UQX	26701	2023-04-21	2022-04-20	3.3	2.35	3.18	2.0	0.003	0.52	0.0	0.04	10.17	0.00	1.752	9.27	0.19	3.3	96.7	0.0	0.26	0.74	0.71	2.97	1.9	0.003	0.65	0.0	0.04	14.02	0.00	2.107	13.58	0.39	3.9	96.1	0.0	-0.01	0.96	0.75	0.75	2.88	9491	1154	5	2	5	0	0	logfile
✔	7TMW	26003	2023-04-20	2022-01-20	3.2	2.40	3.16	3.2	0.003	0.70	0.0	0.05	13.22	0.01	2.193	9.31	0.00	2.6	97.4	0.0	-0.28	0.71	0.64	1.01	2.0	0.004	0.65	0.0	0.04	15.85	0.00	2.125	15.17	0.63	3.8	96.2	0.0	0.29	0.52	0.73	0.68	0.81	7320	930	4	0	0	0	0	logfile

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