Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q9F	18279	2023-09-28	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.64	0.0	0.05	15.99	0.00	2.249	3.13	0.00	2.5	97.5	0.0	-2.11	1.84	0.44	0.86	7.01	6390	414	6	0	0	0	3258	logfile
✔	7UM7	26599	2023-09-28	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	12.58	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.005	0.64	0.0	0.04	15.12	0.00	2.206	3.51	1.68	4.1	95.9	0.0	0.51	0.97	0.83	0.83	4.04	8165	1089	6	0	1	0	0	logfile
✔	7SC8	25029	2023-09-28	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✔	8FN1	29303	2023-09-29	2022-12-26	2.88	2.15	2.86	1.9	0.004	0.59	0.0	0.06	9.15	0.00	2.173	7.25	0.23	2.5	97.5	0.0	1.17	0.78	0.79	4.36	1.9	0.003	0.55	0.0	0.04	13.02	0.00	2.229	6.89	2.04	3.0	97.0	0.0	1.47	0.47	0.78	0.80	3.87	8444	1116	6	0	0	0	0	logfile
✔	7WPC	32682	2023-09-28	2022-01-23	2.57	2.17	—	2.0	0.004	0.72	0.0	0.05	14.23	0.01	2.253	2.54	0.12	4.2	95.8	0.0	-4.19	0.69	0.72	2.24	1.9	0.003	0.61	0.0	0.04	17.18	0.00	1.955	9.72	1.62	3.9	96.1	0.0	-0.76	1.32	0.74	0.81	2.91	8057	980	6	0	9	0	0	logfile
✔	8oRM	17129	2023-09-28	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.77	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.005	0.69	0.0	0.05	16.78	0.01	2.187	6.14	1.08	1.5	98.4	0.2	1.36	0.18	0.70	0.83	5.92	5341	632	7	0	2	210	0	logfile
✔	7VZ4	32220	2023-09-30	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	29.00	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.005	0.70	0.0	0.04	28.42	0.01	2.320	4.08	0.49	0.5	99.5	0.0	2.76	0.80	0.78	0.86	7.64	11843	746	10	290	0	0	0	logfile
✔	8E9Y	27968	2023-09-29	2022-08-27	2.79	2.12	2.79	1.9	0.005	0.81	0.0	0.05	13.31	0.00	2.217	12.62	0.12	5.2	94.8	0.0	-1.06	0.76	0.75	3.19	1.9	0.003	0.59	0.0	0.04	15.56	0.00	2.203	9.72	1.73	4.1	95.8	0.1	-0.25	0.36	0.76	0.76	2.63	8479	1123	6	0	1	0	0	logfile
✔	8oMA	16972	2023-09-30	2023-03-31	3.29	2.61	3.29	3.2	0.008	1.30	1.0	0.09	19.39	0.01	1.878	28.14	2.97	7.9	92.1	0.0	-1.51	0.68	0.70	0.46	2.0	0.003	0.78	0.0	0.04	19.93	0.00	1.955	23.58	0.59	6.2	93.8	0.0	-0.55	1.94	0.63	0.60	0.44	11379	1337	6	34	3	0	0	logfile
✔	7U7N	26382	2023-09-28	2022-03-07	3.47	2.42	3.51	2.0	0.004	0.69	0.0	0.05	17.19	0.01	2.164	8.81	0.89	2.6	97.4	0.0	1.04	0.74	0.76	2.33	2.0	0.004	0.67	0.0	0.04	17.50	0.00	2.113	9.85	0.13	3.4	96.6	0.0	1.04	0.34	0.74	0.77	2.17	7284	884	10	0	16	0	0	logfile
✔	7P6B	13224	2023-09-27	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.67	0.0	0.05	17.01	0.00	2.132	7.10	0.43	4.7	95.3	0.0	-2.28	2.23	0.49	0.88	6.77	4060	540	5	0	0	0	0	logfile
✔	7WY0	32883	2023-09-29	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile
✔	7QKY	14057	2023-09-28	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.004	0.74	0.0	0.05	16.56	0.00	2.028	5.37	0.61	6.2	93.8	0.0	-3.22	1.00	0.39	0.84	7.47	5760	396	6	0	0	0	2862	logfile
✔	7TMW	26003	2023-09-28	2022-01-20	3.2	2.40	3.16	3.2	0.003	0.70	0.0	0.05	13.22	0.01	2.193	9.31	0.00	2.6	97.4	0.0	-0.28	0.71	0.64	1.01	2.0	0.004	0.65	0.0	0.04	15.85	0.00	2.125	15.17	0.63	3.8	96.2	0.0	0.29	0.52	0.73	0.68	0.81	7320	930	4	0	0	0	0	logfile
✔	7WY5	32884	2023-09-28	2022-02-15	2.83	2.25	—	2.0	0.005	0.75	0.0	0.05	12.83	0.00	1.986	1.32	0.00	5.4	94.6	0.0	-0.28	0.77	0.76	3.50	2.0	0.003	0.60	0.0	0.04	15.45	0.00	2.154	5.58	0.92	3.5	96.5	0.0	0.77	0.39	0.78	0.78	2.47	8009	1013	5	0	0	0	0	logfile
✔	8GKH	40184	2023-09-28	2023-03-19	2.7	2.25	2.72	2.0	0.002	1.27	0.0	0.10	19.76	0.00	1.881	5.49	0.00	1.2	98.8	0.0	3.05	0.74	0.70	2.48	2.0	0.004	0.66	0.0	0.04	20.20	0.01	1.856	11.98	0.55	1.7	98.3	0.0	0.65	0.57	0.76	0.74	1.93	7570	600	7	125	3	3	0	logfile
✔	7QKL	14046	2023-09-27	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.62	0.0	0.05	17.01	0.00	2.552	3.25	0.25	2.7	97.3	0.0	-1.29	2.03	0.44	0.91	7.62	3468	456	6	0	0	0	0	logfile
✔	7Y48	33603	2023-09-28	2022-06-14	2.85	2.13	2.80	2.0	0.009	1.29	0.0	0.04	13.78	0.01	2.271	9.22	0.90	2.3	97.7	0.0	1.13	0.51	0.74	2.02	2.0	0.003	0.82	0.0	0.04	16.38	0.00	2.375	3.57	1.58	1.6	98.4	0.0	1.73	0.39	0.53	0.79	2.01	4324	567	1	0	2	0	0	logfile
✔	8HGP	34745	2023-09-29	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	8.02	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.79	0.0	0.05	11.42	0.01	2.084	16.69	0.10	10.2	89.8	0.0	-2.46	1.01	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✔	7WXW	32882	2023-09-28	2022-02-15	2.84	2.24	—	2.1	0.005	0.78	0.0	0.05	12.89	0.01	2.256	1.29	0.00	4.4	95.6	0.0	-2.04	0.75	0.75	3.34	2.0	0.004	0.60	0.0	0.04	15.75	0.00	2.196	5.30	1.58	2.8	97.2	0.0	0.32	1.17	0.78	0.78	2.66	8121	1032	5	0	0	0	0	logfile

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