Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WY8	32887	2023-04-20	2022-02-15	2.83	2.24	—	2.0	0.007	0.81	0.0	0.05	12.03	0.01	2.220	1.00	0.00	4.1	95.9	0.0	-0.39	0.76	0.76	3.57	2.0	0.003	0.57	0.0	0.04	15.15	0.00	2.173	4.56	2.07	3.2	96.8	0.0	1.11	0.42	0.77	0.78	2.72	8049	1015	5	0	0	0	0	logfile
✔	7WZ7	32905	2023-04-20	2022-02-17	2.83	2.26	—	2.0	0.010	0.95	0.0	0.06	11.50	0.01	2.230	6.56	0.00	5.4	94.6	0.0	-0.69	0.71	0.71	2.86	2.0	0.004	0.68	0.0	0.04	14.95	0.00	2.140	12.43	2.31	4.3	95.7	0.0	0.40	1.18	0.72	0.73	1.49	8676	1108	5	0	0	0	0	logfile
✔	7WZ2	32902	2023-04-27	2022-02-16	2.7	2.24	—	2.1	0.003	0.70	0.0	0.05	10.22	0.01	2.236	6.44	5.57	6.6	93.4	0.0	-3.27	0.76	0.74	3.09	2.0	0.004	0.70	0.0	0.05	14.91	0.00	2.088	9.51	3.22	7.6	92.4	0.0	-1.30	0.69	0.79	0.79	3.32	25490	3228	6	0	34	0	0	logfile
✔	7M3N	23658	2023-04-20	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	2.0	0.002	0.55	0.0	0.04	16.96	0.00	2.273	6.81	2.75	3.7	96.3	0.0	-0.46	0.48	0.45	0.84	4.74	6004	759	3	0	0	0	0	logfile
✔	7WXW	32882	2023-04-20	2022-02-15	2.84	2.24	—	2.1	0.005	0.78	0.0	0.05	12.89	0.01	2.256	1.29	0.00	4.4	95.6	0.0	-2.04	0.75	0.75	3.34	2.0	0.004	0.60	0.0	0.04	15.75	0.00	2.196	5.30	1.58	2.8	97.2	0.0	0.32	1.17	0.78	0.78	2.66	8121	1032	5	0	0	0	0	logfile
✔	7XoA	33342	2023-04-29	2022-05-01	3.2	2.32	3.20	2.1	0.003	0.56	0.0	0.04	8.93	0.01	1.863	8.79	0.06	2.8	97.2	0.1	-2.65	0.59	0.48	1.63	2.0	0.003	0.69	0.0	0.05	14.30	0.00	2.149	9.71	0.44	4.3	95.7	0.0	-0.98	0.83	0.73	0.77	2.59	29202	3670	8	0	35	0	0	logfile
✔	7TZF	26208	2023-04-21	2022-02-15	2.4	2.00	2.20	2.3	0.004	0.53	0.0	0.04	14.56	0.00	2.252	4.74	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.002	0.55	0.0	0.04	16.89	0.00	2.212	5.33	1.72	1.7	98.3	0.0	0.92	0.83	0.56	0.82	4.60	10342	1272	13	0	19	25	0	logfile
✔	7R4X	14317	2023-04-28	2022-02-09	2.15	1.94	—	2.1	0.012	1.13	0.0	0.06	16.98	0.04	1.443	4.90	4.12	3.8	96.2	0.1	-0.66	0.70	0.73	4.07	2.0	0.005	1.06	0.0	0.04	17.40	0.01	1.810	12.10	2.57	3.6	96.4	0.0	0.26	0.92	0.77	0.85	4.42	77937	4792	77	1646	174	4117	0	logfile
✔	7VDA	31912	2023-04-26	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	7.99	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.002	0.54	0.0	0.04	18.07	0.00	2.051	8.99	2.60	2.1	97.9	0.0	1.12	0.41	0.66	0.84	4.19	23292	2976	6	0	0	0	0	logfile
✔	7VUG	32127	2023-04-21	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.57	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.004	0.64	0.0	0.04	15.83	0.00	1.991	13.01	0.20	5.5	94.5	0.0	-0.68	0.34	0.73	0.74	2.08	8924	1127	6	0	1	0	0	logfile
✔	8HGP	34745	2023-04-21	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	8.02	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.79	0.0	0.05	11.42	0.01	2.084	16.69	0.10	10.2	89.8	0.0	-2.46	1.01	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✔	7Xo6	33338	2023-04-20	2022-05-01	2.6	2.25	3.18	2.1	0.003	0.56	0.0	0.08	13.25	0.01	2.075	2.62	0.00	1.3	98.7	0.0	-1.43	0.72	0.68	2.45	2.0	0.003	0.59	0.0	0.04	17.39	0.00	2.114	8.50	1.90	1.9	98.1	0.0	0.74	1.56	0.78	0.81	3.00	6440	786	5	0	5	0	0	logfile
✔	7Xo9	33341	2023-04-20	2022-05-01	3.0	2.26	3.23	3.1	0.002	0.47	0.0	0.06	13.17	0.01	2.059	3.31	0.00	2.0	98.0	0.0	-1.79	0.74	0.73	2.69	2.0	0.003	0.64	0.0	0.04	17.46	0.00	2.129	9.86	1.87	2.8	97.2	0.0	0.54	0.65	0.76	0.79	2.77	6483	793	2	0	5	0	0	logfile
✔	7NJN	12392	2023-04-27	2021-02-17	2.64	2.61	—	2.0	0.004	0.52	0.0	0.04	14.52	0.00	1.931	6.46	0.00	2.3	97.6	0.1	1.48	0.85	0.87	3.94	2.0	0.004	0.51	0.0	0.04	15.78	0.00	1.716	6.68	0.55	2.4	97.6	0.1	1.57	0.89	0.86	0.89	3.84	74548	4927	31	0	11	16	37299	logfile
✔	7MiJ	23853	2023-04-26	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	19.92	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.002	0.51	0.0	0.04	18.05	0.00	2.213	4.43	0.92	2.6	97.4	0.0	1.38	1.08	0.75	0.80	4.57	23010	2556	12	0	38	328	0	logfile
✔	7N1Y	24127	2023-04-27	2021-05-28	4.3	2.48	—	2.0	0.016	2.11	23.0	0.15	14.95	0.01	1.099	10.84	1.91	8.5	90.8	0.6	-2.82	0.78	0.64	—	2.0	0.003	0.77	0.0	0.05	14.40	0.00	2.080	14.49	0.07	5.8	94.2	0.0	-1.33	0.71	0.78	0.64	—	26636	3242	31	0	91	0	0	logfile
✔	7N1W	24125	2023-04-27	2021-05-28	3.33	2.63	—	2.0	0.014	1.79	17.0	0.12	13.61	0.01	1.951	6.11	0.81	6.0	93.5	0.5	-1.65	0.82	0.79	3.10	2.0	0.003	0.73	0.0	0.05	15.68	0.00	2.102	11.00	0.32	4.4	95.6	0.0	-0.08	1.57	0.84	0.81	2.31	26810	3257	35	0	95	0	0	logfile
✔	7RZT	24777	2023-04-19	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.52	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.26	0.24	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	7RZS	24776	2023-04-19	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.42	0.0	0.04	16.16	0.00	2.327	4.66	0.35	0.0	100.0	0.0	5.95	1.19	0.79	0.82	1.19	2445	324	6	0	0	0	0	logfile
✔	7RZR	24775	2023-04-19	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile

• ← previous
• Page 6 of 372
• next →