Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QKY	14057	2022-07-03	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.003	0.69	0.0	0.05	16.56	0.00	2.218	4.85	0.61	6.2	93.8	0.0	-3.18	1.00	0.40	0.84	7.35	5760	396	6	0	0	0	2862	logfile
✔	7EiB	31145	2022-07-03	2021-03-30	3.0	2.24	—	2.0	0.005	0.86	0.0	0.05	12.65	0.01	2.306	3.66	0.27	2.0	98.0	0.0	-0.34	0.74	0.75	3.17	2.0	0.004	0.66	0.0	0.04	16.05	0.01	2.110	10.62	1.61	2.2	97.8	0.0	1.18	1.20	0.74	0.77	1.92	7204	928	5	0	0	0	0	logfile
✔	7WPA	32680	2022-07-06	2022-01-23	2.77	2.26	—	2.1	0.003	0.76	2.0	0.05	14.12	0.01	2.327	3.44	0.45	5.4	94.5	0.0	-4.08	0.72	0.73	2.35	2.0	0.005	0.70	0.0	0.05	16.69	0.01	2.180	9.60	2.78	5.8	94.1	0.1	-1.52	0.65	0.76	0.80	2.87	30444	3774	20	0	47	0	0	logfile
✔	7RQS	24635	2022-07-03	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.94	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.63	0.0	0.04	15.66	0.01	1.982	12.21	0.53	9.4	90.5	0.1	-1.03	0.59	0.70	0.69	2.57	7792	1074	1	0	1	0	0	logfile
✔	7JSX	22462	2022-07-07	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.88	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.012	1.10	0.0	0.04	14.60	0.00	2.135	9.41	0.80	2.4	97.6	0.0	1.01	0.64	0.82	0.89	6.51	38813	4832	40	0	0	1141	0	logfile
✔	6YL3	10835	2022-07-10	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.58	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.006	0.81	0.0	0.05	16.29	0.01	1.664	5.82	1.62	4.1	95.8	0.1	-0.24	0.52	0.81	0.86	7.07	150156	9552	84	0	24	3672	73044	logfile
✔	7VDA	31912	2022-07-05	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	8.23	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.003	0.60	0.0	0.04	18.09	0.00	2.073	9.24	3.21	2.5	97.5	0.0	0.92	0.42	0.66	0.83	4.25	23292	2976	6	0	0	0	0	logfile
✔	7EZM	31389	2022-07-03	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.15	13.21	0.01	2.228	5.06	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.004	0.78	0.0	0.07	16.17	0.00	2.095	11.52	2.51	2.1	97.9	0.0	0.54	0.63	0.78	0.80	2.94	9008	1171	6	0	0	0	0	logfile
✔	7QEQ	13937	2022-07-04	2021-12-03	1.9	2.38	1.89	2.1	0.009	0.61	0.0	0.04	12.54	0.00	2.181	2.19	1.18	1.1	98.9	0.0	1.60	0.82	0.90	4.56	2.1	0.003	0.58	0.0	0.04	14.03	0.00	2.247	2.92	1.13	1.8	98.2	0.0	4.07	0.99	0.82	0.92	4.18	19313	2268	36	0	60	305	0	logfile
✔	7QEY	13944	2022-07-03	2021-12-03	2.0	2.46	—	2.2	0.009	0.57	0.0	0.03	10.74	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.1	0.003	0.67	0.0	0.04	13.24	0.00	2.166	4.70	1.74	2.2	97.8	0.0	3.20	0.55	0.78	0.92	4.07	9467	1092	18	0	30	281	0	logfile
✔	6ZJA	11233	2022-07-05	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.19	0.01	1.974	0.84	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.004	0.72	0.0	0.05	15.95	0.01	1.820	1.85	0.56	4.3	95.7	0.0	0.02	0.39	0.78	0.89	6.77	77951	9684	60	0	36	3191	0	logfile
✔	7VXE	32177	2022-07-08	2021-11-12	3.2	2.31	—	2.0	0.003	0.45	0.0	0.04	7.36	0.00	2.082	1.83	0.00	4.4	95.5	0.1	-1.79	0.61	0.54	2.41	2.1	0.003	0.58	0.0	0.04	12.72	0.00	1.935	4.99	0.22	3.3	96.6	0.2	-0.03	1.46	0.70	0.72	2.67	49296	3186	3	0	0	0	24366	logfile
✔	7F9Z	31501	2022-07-03	2021-07-05	3.2	2.27	—	2.1	0.005	0.56	6.0	0.04	13.25	0.00	2.200	7.36	0.00	1.9	98.1	0.0	1.50	0.69	0.68	1.77	2.1	0.003	0.57	6.0	0.04	15.84	0.00	2.155	11.49	0.46	2.7	97.3	0.0	0.70	1.54	0.72	0.73	2.39	9981	1264	7	0	7	0	0	logfile
✔	6WWG	21934	2022-07-04	2020-05-09	2.9	2.24	2.91	2.1	0.007	0.93	0.0	0.06	14.85	0.02	1.969	6.56	2.58	4.7	95.1	0.3	-3.52	0.66	0.80	4.17	2.1	0.006	0.75	0.0	0.05	17.42	0.00	1.834	9.23	2.96	4.2	95.8	0.0	-0.57	0.69	0.68	0.85	3.72	19749	2479	12	2	10	0	0	logfile
✔	7N1V	24124	2022-07-05	2021-05-28	3.21	2.67	—	2.0	0.013	1.76	10.0	0.13	13.78	0.01	1.776	4.44	0.98	6.5	93.2	0.3	-1.63	0.82	0.80	3.43	2.1	0.006	0.78	0.0	0.05	15.96	0.01	2.098	10.77	0.28	4.2	95.8	0.0	-0.34	1.32	0.84	0.83	2.81	26947	3274	35	0	95	0	0	logfile
✔	7LVR	23541	2022-07-03	2021-02-26	2.9	2.16	2.87	2.1	0.013	1.04	0.0	0.06	14.41	0.01	1.937	3.79	0.19	5.2	94.8	0.0	-3.15	0.57	0.78	4.33	2.1	0.004	0.67	0.0	0.04	17.14	0.01	1.915	7.42	2.18	2.8	97.2	0.0	-0.43	1.31	0.59	0.83	3.63	9802	1231	6	1	6	0	0	logfile
✔	7EZH	31387	2022-07-03	2021-06-01	3.2	2.28	—	2.1	0.004	0.66	1.0	0.15	12.76	0.01	2.278	2.92	0.74	4.7	95.2	0.1	-1.38	0.73	0.72	2.97	2.1	0.003	0.77	0.0	0.07	15.76	0.00	2.182	12.69	0.42	2.4	97.6	0.0	0.84	1.61	0.75	0.76	2.16	8838	1150	6	0	0	0	0	logfile
✔	6SAG	10130	2022-07-03	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.63	0.0	0.04	15.40	0.01	2.054	3.11	1.17	3.1	96.9	0.0	1.56	0.73	0.60	0.89	6.90	54080	6120	240	120	240	2840	0	logfile
✔	6XEY	22156	2022-07-06	2020-06-14	3.25	3.61	3.09	2.1	0.005	0.81	1.0	0.05	12.58	0.01	2.265	3.65	0.26	5.1	94.8	0.1	-1.87	0.88	0.83	3.34	2.1	0.003	0.57	0.0	0.04	13.62	0.00	2.140	7.28	0.18	5.2	94.8	0.0	-0.57	0.31	0.89	0.85	2.45	28482	3788	24	0	63	0	0	logfile
✔	6WWM	21940	2022-07-03	2020-05-09	2.8	2.26	2.84	2.1	0.012	1.04	0.0	0.06	14.80	0.02	1.967	5.63	0.77	6.9	93.1	0.0	-3.87	0.60	0.80	4.41	2.1	0.003	0.67	0.0	0.04	17.16	0.00	1.954	7.84	1.92	4.1	95.9	0.0	-0.45	1.09	0.61	0.85	3.41	9664	1212	6	1	4	0	0	logfile

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