Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CZi	27098	2022-12-11	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.40	0.0	0.03	15.24	0.00	2.167	6.23	0.00	0.0	100.0	0.0	5.34	0.86	0.83	0.84	1.97	2550	339	6	0	0	0	0	logfile
✔	7XT4	33439	2022-12-13	2022-05-16	3.08	2.22	2.99	2.0	0.006	0.91	1.0	0.06	17.94	0.01	2.244	4.73	3.70	5.0	94.8	0.2	-2.53	0.80	0.80	3.42	2.0	0.003	0.60	0.0	0.04	18.40	0.00	2.207	7.97	0.29	4.5	95.4	0.1	0.48	1.44	0.80	0.82	3.19	16850	1939	5	55	4	0	0	logfile
✔	7XSQ	33431	2022-12-13	2022-05-15	2.88	2.17	2.83	2.1	0.009	0.93	3.0	0.06	17.11	0.01	2.157	2.67	2.74	6.1	93.8	0.1	-2.88	0.77	0.75	2.31	2.0	0.004	0.64	0.0	0.04	19.21	0.00	2.096	5.67	2.62	5.0	94.9	0.1	0.35	1.08	0.81	0.83	3.24	16573	1967	4	34	4	0	0	logfile
✔	7V69	31739	2022-12-12	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.46	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	2.0	0.003	0.66	0.0	0.04	14.96	0.00	2.103	15.89	0.34	5.0	95.0	0.0	-1.07	1.15	0.70	0.68	2.12	8539	1122	5	0	0	0	0	logfile
✔	7LVQ	23540	2022-12-12	2021-02-26	2.9	2.12	2.86	2.0	0.024	1.33	1.0	0.09	14.76	0.01	1.920	5.41	0.66	6.4	93.5	0.1	-3.20	0.55	0.77	4.09	2.0	0.004	0.66	0.0	0.04	17.27	0.00	1.934	8.69	1.42	3.4	96.6	0.0	-0.01	1.04	0.58	0.82	3.38	9767	1226	6	1	5	0	0	logfile
✔	8DWC	27752	2022-12-12	2022-08-01	2.87	2.13	2.85	2.0	0.008	0.65	0.0	0.05	12.54	0.00	2.095	7.34	0.00	4.8	95.2	0.0	-1.14	0.76	0.81	4.35	2.0	0.002	0.54	0.0	0.04	15.11	0.00	2.169	5.68	1.18	3.4	96.6	0.0	1.33	0.35	0.77	0.83	3.19	8298	1102	6	0	0	0	0	logfile
✔	7UZS	26917	2022-12-12	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.0	0.003	0.56	0.0	0.04	17.93	0.00	2.035	4.15	1.43	2.0	98.0	0.0	1.16	0.30	0.64	0.87	6.29	10550	658	1	0	0	193	5183	logfile
✔	8DPF	27633	2022-12-12	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.77	0.0	0.07	10.32	0.00	2.093	3.71	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.003	0.63	0.0	0.04	14.01	0.00	2.167	4.91	1.22	2.8	97.2	0.0	0.74	1.01	0.80	0.80	3.04	8160	1093	6	0	2	0	0	logfile
✔	7SCH	25035	2022-12-12	2021-09-28	3.1	2.24	3.07	2.0	0.003	0.61	0.0	0.04	11.92	0.00	2.218	9.35	0.19	4.1	95.9	0.0	0.02	0.78	0.75	3.40	2.0	0.003	0.61	0.0	0.04	15.17	0.00	2.079	10.39	0.38	4.9	95.1	0.0	0.38	0.40	0.78	0.80	2.86	9711	1190	3	0	3	0	0	logfile
✔	7MKM	23899	2022-12-11	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.11	0.01	2.177	7.69	0.00	2.8	97.2	0.0	-1.30	0.52	0.58	1.72	2.0	0.003	0.76	0.0	0.04	14.85	0.00	2.233	10.09	0.00	4.8	95.2	0.0	-2.02	0.61	0.53	0.62	1.93	3192	406	4	0	1	0	0	logfile
✔	7EZM	31389	2022-12-12	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.07	13.16	0.01	2.228	5.06	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.004	0.68	0.0	0.04	16.11	0.00	2.105	11.46	2.61	2.2	97.8	0.0	0.37	0.63	0.78	0.80	3.25	9008	1171	6	0	0	0	0	logfile
✔	7WY0	32883	2022-12-12	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	8.07	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.05	15.17	0.00	2.114	13.56	1.87	5.0	95.0	0.0	0.06	0.47	0.75	0.75	2.96	8723	1112	5	0	0	0	0	logfile
✔	6Xi8	22191	2022-12-11	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.20	0.01	1.333	6.79	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	2.0	0.004	0.96	0.0	0.05	17.05	0.01	2.101	19.76	1.74	7.2	92.8	0.0	-2.47	1.26	0.69	0.64	0.24	5022	636	4	0	2	0	0	logfile
✔	7KoD	22972	2022-12-13	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.51	0.0	0.04	13.89	0.00	1.846	2.78	0.11	0.8	99.2	0.0	5.13	0.58	0.87	0.93	8.03	68186	4128	48	0	0	1727	32643	logfile
✔	7LT3	23510	2022-12-16	2021-02-18	4.6	3.52	—	4.3	0.012	1.33	34.0	0.08	16.13	0.01	2.017	25.66	1.63	10.7	89.2	0.1	-2.30	0.59	0.56	—	2.0	0.004	0.83	0.0	0.05	15.20	0.01	2.078	20.92	0.01	5.9	94.1	0.0	-0.77	1.45	0.60	0.65	—	93244	11261	22	122	42	0	0	logfile
✔	7B18	11981	2022-12-16	2020-11-24	2.62	2.27	2.75	2.1	0.007	0.84	0.0	0.06	12.74	0.01	2.028	13.06	0.40	4.1	95.8	0.1	-0.36	0.72	0.71	3.05	2.0	0.005	0.68	1.0	0.05	15.88	0.00	2.066	12.58	2.60	4.9	95.1	0.0	-0.38	0.47	0.73	0.73	2.64	30105	3814	13	0	44	0	0	logfile
✔	7XoC	33344	2022-12-11	2022-05-01	3.0	2.28	3.19	2.1	0.002	0.48	0.0	0.04	9.17	0.00	2.149	5.42	0.00	2.1	97.9	0.0	-2.11	0.73	0.69	2.72	2.0	0.003	0.63	0.0	0.04	16.23	0.00	2.089	8.52	1.17	3.2	96.8	0.0	0.83	1.10	0.77	0.82	3.28	6432	786	5	0	5	0	0	logfile
✔	7LD0	23278	2022-12-19	2021-01-12	3.1	2.33	3.20	1.9	0.006	0.65	0.0	0.04	13.28	0.01	2.229	9.07	0.00	6.1	93.9	0.0	-2.06	0.76	0.75	1.84	2.0	0.005	0.80	0.0	0.05	16.93	0.00	2.009	11.57	0.66	4.9	95.1	0.0	-0.71	0.59	0.77	0.77	0.93	36976	4720	8	0	0	0	0	logfile
✔	7T6U	25728	2022-12-12	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	5.0	0.06	12.93	0.01	2.315	3.82	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	2.0	0.003	0.63	1.0	0.04	16.09	0.00	2.126	9.64	2.14	2.5	97.5	0.0	0.33	1.21	0.79	0.81	3.23	9033	1152	6	0	2	0	0	logfile
✔	7JSX	22462	2022-12-20	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.88	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.004	0.67	0.0	0.04	14.34	0.00	2.160	8.36	0.80	2.3	97.7	0.0	0.95	0.64	0.83	0.90	6.36	38813	4832	40	0	0	1141	0	logfile

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