Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ESV	28580	2023-09-28	2022-10-14	3.3	2.37	3.29	2.0	0.006	0.71	0.0	0.04	17.57	0.01	1.929	12.92	0.00	6.7	93.1	0.2	-0.67	0.76	0.76	2.53	2.0	0.005	0.71	0.0	0.05	17.76	0.00	1.937	15.12	0.13	8.0	91.8	0.2	-0.60	0.29	0.77	0.77	2.67	7222	933	8	0	13	0	0	logfile
✔	7SWW	25487	2023-09-27	2021-11-21	3.13	2.34	—	2.0	0.004	0.76	0.0	0.06	14.28	0.01	2.214	9.55	0.00	2.4	97.6	0.0	-0.48	0.58	0.70	2.57	2.0	0.004	0.66	0.0	0.05	15.50	0.00	2.095	10.89	0.89	4.6	95.4	0.0	-0.66	0.51	0.58	0.71	2.16	4172	511	6	0	8	0	0	logfile
✔	7Xo6	33338	2023-09-28	2022-05-01	2.6	2.25	3.18	2.1	0.003	0.56	0.0	0.08	13.25	0.01	2.075	2.62	0.00	1.3	98.7	0.0	-1.43	0.72	0.68	2.45	2.0	0.003	0.59	0.0	0.04	17.39	0.00	2.114	8.50	1.90	1.9	98.1	0.0	0.74	1.56	0.78	0.81	3.00	6440	786	5	0	5	0	0	logfile
✔	7RZS	24776	2023-09-27	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.42	0.0	0.04	16.16	0.00	2.327	4.66	0.35	0.0	100.0	0.0	5.95	1.19	0.79	0.82	1.19	2445	324	6	0	0	0	0	logfile
✔	7P6B	13224	2023-09-27	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.67	0.0	0.05	17.01	0.00	2.132	7.10	0.43	4.7	95.3	0.0	-2.28	2.23	0.49	0.88	6.77	4060	540	5	0	0	0	0	logfile
✔	7RZR	24775	2023-09-27	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7VUG	32127	2023-09-30	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.57	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.004	0.64	0.0	0.04	15.83	0.00	1.991	13.01	0.20	5.5	94.5	0.0	-0.68	0.34	0.73	0.74	2.08	8924	1127	6	0	1	0	0	logfile
✔	7MTR	23995	2023-09-30	2021-05-13	3.3	2.40	—	2.1	0.006	0.93	1.0	0.05	13.82	0.01	2.236	7.85	1.25	4.1	95.9	0.0	-0.18	0.78	0.75	2.62	2.1	0.004	0.63	0.0	0.04	14.93	0.01	2.122	4.80	0.21	3.5	96.5	0.0	0.08	0.52	0.80	0.80	2.26	10933	1526	4	0	3	0	0	logfile
✔	8C7G	16457	2023-09-30	2023-01-15	3.2	2.28	—	2.1	0.004	0.63	0.0	0.05	13.28	0.00	2.111	4.10	0.00	3.4	96.6	0.0	0.11	0.76	0.74	3.44	2.1	0.004	0.57	0.0	0.04	15.32	0.00	2.199	4.53	0.39	3.1	96.9	0.0	0.77	0.32	0.77	0.76	2.89	11525	1429	3	0	0	0	0	logfile
✔	8HAF	34587	2023-09-29	2022-10-26	3.25	2.28	3.09	2.2	0.003	0.82	0.0	0.07	14.58	0.00	1.671	7.15	0.40	2.8	97.2	0.0	0.83	0.70	0.74	2.25	2.1	0.003	0.79	0.0	0.07	15.75	0.00	1.678	8.89	0.60	2.8	97.2	0.0	0.55	0.53	0.77	0.80	2.95	9681	1167	6	0	17	0	0	logfile
✔	7N95	24250	2023-09-28	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✔	7JVR	22511	2023-09-29	2020-08-22	2.8	2.21	—	2.0	0.012	0.93	0.0	0.05	8.66	0.01	2.235	4.75	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.003	0.73	0.0	0.04	14.58	0.00	2.052	14.26	2.88	2.5	97.5	0.0	0.57	0.66	0.75	0.77	2.68	8872	1126	6	0	1	0	0	logfile
✔	8GJN	40095	2023-09-27	2023-03-16	3.6	2.60	3.37	3.3	0.013	1.65	0.0	0.09	14.10	0.01	2.431	9.25	1.10	8.7	91.3	0.0	-2.73	0.60	0.68	2.64	2.1	0.003	0.68	0.0	0.04	15.56	0.00	2.267	11.25	0.27	3.9	95.9	0.2	-1.47	0.70	0.60	0.70	3.15	3319	421	3	0	1	0	0	logfile
✔	7YDM	33753	2023-09-28	2022-07-04	2.89	2.31	2.90	2.1	0.007	0.72	0.0	0.05	13.26	0.01	2.115	3.82	0.00	5.0	95.0	0.0	-0.11	0.79	0.80	3.14	2.1	0.004	0.58	0.0	0.04	16.28	0.00	2.160	4.31	1.59	4.1	95.9	0.0	0.93	0.38	0.80	0.82	2.16	8131	1031	5	0	0	0	0	logfile
✔	7UZS	26917	2023-09-30	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.1	0.004	0.58	0.0	0.04	17.92	0.00	2.030	4.15	2.15	2.2	97.8	0.0	1.03	0.31	0.64	0.87	6.34	10550	658	1	0	0	193	5183	logfile
✔	7ZZ6	15036	2023-09-28	2022-05-25	2.15	2.39	2.12	2.1	0.006	0.68	0.0	0.04	17.30	0.00	1.385	8.71	3.48	2.9	97.1	0.0	0.64	0.91	0.90	4.87	2.1	0.004	0.61	0.0	0.04	17.09	0.00	1.999	8.27	3.14	3.0	97.0	0.0	0.69	0.24	0.93	0.92	4.82	8257	1017	6	0	6	157	0	logfile
✔	7YDP	33755	2023-09-28	2022-07-04	3.1	2.36	3.18	2.1	0.005	0.73	0.0	0.05	12.57	0.00	2.123	11.85	0.00	5.2	94.8	0.0	-1.21	0.68	0.65	1.63	2.1	0.003	0.65	0.0	0.04	14.59	0.00	2.168	10.22	0.23	4.9	95.1	0.0	0.01	0.40	0.69	0.66	1.23	8028	1022	5	0	0	0	0	logfile
✔	5M5H	4155	2023-09-27	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.89	0.0	0.05	12.67	0.01	2.275	23.84	0.00	8.7	91.3	0.0	-1.45	2.20	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	8DZQ	27805	2023-09-29	2022-08-08	2.82	2.18	2.79	2.1	0.019	0.79	0.0	0.11	13.31	0.00	2.244	6.40	0.23	6.2	93.8	0.0	-0.46	0.74	0.71	3.49	2.1	0.004	0.69	0.0	0.04	15.86	0.00	2.114	9.15	2.18	6.0	94.0	0.0	-0.07	0.30	0.76	0.75	2.91	8342	1100	5	0	1	0	0	logfile
✔	7YDJ	33749	2023-09-29	2022-07-04	3.03	2.35	3.04	2.1	0.006	0.73	0.0	0.05	12.73	0.00	2.184	6.74	0.10	6.2	93.8	0.0	-0.66	0.75	0.75	2.66	2.1	0.003	0.64	0.0	0.04	14.91	0.00	2.174	5.03	0.31	4.5	95.5	0.0	0.62	0.36	0.75	0.75	2.35	8751	1111	5	0	0	0	0	logfile

• ← previous
• Page 7 of 206
• next →