Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WXW	32882	2023-07-04	2022-02-15	2.84	2.24	—	2.1	0.005	0.78	0.0	0.05	12.89	0.01	2.256	1.29	0.00	4.4	95.6	0.0	-2.04	0.75	0.75	3.34	2.0	0.004	0.60	0.0	0.04	15.75	0.00	2.196	5.30	1.58	2.8	97.2	0.0	0.32	1.17	0.78	0.78	2.66	8121	1032	5	0	0	0	0	logfile
✔	7VUG	32127	2023-07-05	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.57	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.004	0.64	0.0	0.04	15.83	0.00	1.991	13.01	0.20	5.5	94.5	0.0	-0.68	0.34	0.73	0.74	2.08	8924	1127	6	0	1	0	0	logfile
✔	7L1R	23116	2023-07-11	2020-12-15	3.1	2.19	—	2.1	0.011	1.76	28.0	0.11	14.03	0.01	1.965	4.03	3.32	3.3	96.7	0.0	-0.59	0.65	0.71	2.77	2.0	0.004	0.71	0.0	0.05	18.14	0.01	1.835	9.94	1.02	3.3	96.7	0.0	0.09	0.76	0.78	0.80	2.32	24199	3118	13	0	12	0	0	logfile
✔	7TiK	25912	2023-07-03	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.50	0.0	0.04	16.49	0.00	2.245	8.91	1.01	0.6	99.4	0.0	5.53	0.94	0.78	0.80	1.16	2565	339	6	0	0	0	0	logfile
✔	8FoZ	29357	2023-07-11	2023-01-03	2.0	2.03	2.09	2.0	0.009	0.91	0.0	0.06	15.66	0.01	2.238	2.94	1.31	0.5	99.5	0.0	0.22	0.80	0.91	7.15	2.0	0.003	0.56	0.0	0.04	15.87	0.00	2.255	2.90	1.35	0.8	99.2	0.0	0.61	0.87	0.79	0.91	7.08	23648	3072	16	0	16	0	0	logfile
✔	7Q2X	13783	2023-07-09	2021-10-26	3.0	2.22	—	2.1	0.002	0.55	0.0	0.04	17.41	0.00	2.035	7.69	0.11	2.6	97.4	0.0	2.57	0.74	0.70	1.84	2.0	0.003	0.69	0.0	0.04	20.45	0.00	1.906	10.04	2.31	3.4	96.6	0.0	1.78	1.28	0.77	0.79	2.17	18240	2098	8	72	6	0	0	logfile
✔	7WZ7	32905	2023-07-04	2022-02-17	2.83	2.26	—	2.0	0.010	0.95	0.0	0.06	11.50	0.01	2.230	6.56	0.00	5.4	94.6	0.0	-0.69	0.71	0.71	2.86	2.0	0.004	0.68	0.0	0.04	14.95	0.00	2.140	12.43	2.31	4.3	95.7	0.0	0.40	1.18	0.72	0.73	1.49	8676	1108	5	0	0	0	0	logfile
✔	7RZQ	24774	2023-07-03	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	7U7N	26382	2023-07-04	2022-03-07	3.47	2.42	3.51	2.0	0.004	0.69	0.0	0.05	17.19	0.01	2.164	8.81	0.89	2.6	97.4	0.0	1.04	0.74	0.76	2.33	2.0	0.004	0.67	0.0	0.04	17.50	0.00	2.113	9.85	0.13	3.4	96.6	0.0	1.04	0.34	0.74	0.77	2.17	7284	884	10	0	16	0	0	logfile
✔	7TZF	26208	2023-07-05	2022-02-15	2.4	2.00	2.20	2.3	0.004	0.53	0.0	0.04	14.56	0.00	2.252	4.74	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.002	0.55	0.0	0.04	16.89	0.00	2.212	5.33	1.72	1.7	98.3	0.0	0.92	0.83	0.56	0.82	4.60	10342	1272	13	0	19	25	0	logfile
✔	7UM6	26598	2023-07-04	2022-04-06	2.79	2.13	2.81	1.9	0.012	0.64	0.0	0.04	11.16	0.00	2.359	2.38	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	2.0	0.003	0.61	0.0	0.04	14.17	0.00	2.248	4.01	1.81	2.8	97.2	0.0	0.66	0.38	0.83	0.83	3.39	8175	1094	6	0	1	0	0	logfile
✔	8DS3	27682	2023-07-15	2022-07-21	3.07	2.62	3.25	3.2	0.005	0.90	0.0	0.05	16.89	0.01	2.212	11.43	0.28	4.5	95.5	0.0	-1.35	0.71	0.70	1.32	2.0	0.004	0.62	0.0	0.04	16.10	0.00	2.174	13.81	0.08	4.3	95.7	0.0	-0.51	0.50	0.73	0.79	1.31	32601	3888	18	0	21	6	0	logfile
✔	7RZS	24776	2023-07-03	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.42	0.0	0.04	16.16	0.00	2.327	4.66	0.35	0.0	100.0	0.0	5.95	1.19	0.79	0.82	1.19	2445	324	6	0	0	0	0	logfile
✔	7WY5	32884	2023-07-04	2022-02-15	2.83	2.25	—	2.0	0.005	0.75	0.0	0.05	12.83	0.00	1.986	1.32	0.00	5.4	94.6	0.0	-0.28	0.77	0.76	3.50	2.0	0.003	0.60	0.0	0.04	15.45	0.00	2.154	5.58	0.92	3.5	96.5	0.0	0.77	0.39	0.78	0.78	2.47	8009	1013	5	0	0	0	0	logfile
✔	7XT4	33439	2023-07-08	2022-05-16	3.08	2.22	2.99	2.0	0.006	0.91	1.0	0.06	17.94	0.01	2.244	4.64	3.70	5.0	94.8	0.2	-2.53	0.80	0.80	3.42	2.0	0.004	0.62	0.0	0.04	18.32	0.00	2.219	8.16	0.47	4.7	95.3	0.1	0.35	1.44	0.81	0.82	3.13	16850	1939	5	55	4	0	0	logfile
✔	8ABL	15325	2023-07-14	2022-07-04	2.1	2.00	2.04	2.0	0.010	1.69	34.0	0.11	17.90	0.01	2.060	2.82	4.41	2.2	97.8	0.0	-0.94	0.73	0.90	6.29	2.0	0.003	0.62	0.0	0.04	17.53	0.00	2.197	4.21	1.15	1.4	98.6	0.0	1.94	1.31	0.74	0.90	5.69	31660	3878	33	0	32	0	0	logfile
✔	8HGP	34745	2023-07-05	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	8.02	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.79	0.0	0.05	11.42	0.01	2.084	16.69	0.10	10.2	89.8	0.0	-2.46	1.01	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✔	7F2o	31429	2023-07-05	2021-06-11	2.9	2.20	—	2.1	0.003	0.57	0.0	0.04	12.79	0.01	2.194	5.71	0.41	3.2	96.8	0.0	-0.75	0.70	0.68	3.19	2.0	0.003	0.69	0.0	0.04	15.84	0.00	2.017	14.10	2.55	2.4	97.6	0.0	0.77	0.66	0.75	0.77	2.54	9004	1150	6	0	0	0	0	logfile
✔	7UQY	26702	2023-07-05	2022-04-20	3.0	2.33	2.95	2.1	0.003	0.59	0.0	0.04	12.61	0.00	2.197	10.04	0.00	5.0	95.0	0.0	-0.18	0.76	0.70	3.53	2.0	0.003	0.63	0.0	0.04	15.36	0.00	2.110	12.74	1.34	4.0	96.0	0.0	-0.18	0.43	0.76	0.75	2.98	9556	1167	4	1	3	0	0	logfile
✔	7RZV	24779	2023-07-03	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile

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