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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5X1G | 6701 | 2021-01-05 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | 0.002 | 0.62 | 0.0 | 0.03 | 3.04 | 0.00 | 2.649 | 0.00 | 0.00 | 0.0 | 100.0 | 0.0 | 4.51 | 3.37 | 0.01 | 0.14 | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UXB | 20932 | 2021-01-05 | 2019-11-07 | 4.9 | 5.50 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.627 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.74 | 0.69 | — | 6.0 | 0.002 | 0.59 | 0.0 | 0.05 | 3.18 | 0.00 | 2.362 | 2.92 | 0.00 | 2.6 | 97.4 | 0.0 | 2.73 | 2.34 | 0.77 | 0.74 | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UXA | 20931 | 2021-01-05 | 2019-11-07 | 4.5 | 5.05 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.628 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.71 | 0.63 | — | 6.0 | 0.002 | 0.64 | 0.0 | 0.05 | 3.53 | 0.00 | 2.322 | 2.46 | 0.00 | 2.1 | 97.9 | 0.0 | 2.46 | 4.60 | 0.73 | 0.67 | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SH5 | 10194 | 2021-01-05 | 2019-08-05 | 4.6 | 4.70 | — | 4.5 | 0.005 | 0.97 | 0.0 | 0.05 | 5.65 | 0.01 | 2.474 | 2.35 | 0.00 | 9.0 | 91.0 | 0.0 | -3.63 | 0.80 | 0.76 | — | 4.5 | 0.003 | 0.73 | 0.0 | 0.04 | 4.32 | 0.00 | 2.348 | 4.52 | 0.00 | 6.8 | 93.2 | 0.0 | -1.08 | 1.60 | 0.80 | 0.81 | — | 11529 | 2338 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iG9 | 9664 | 2021-01-06 | 2018-09-25 | 4.6 | 5.44 | 4.27 | 4.3 | 0.007 | 1.07 | 0.0 | 0.05 | 9.51 | 0.01 | 2.299 | 9.65 | 0.73 | 10.2 | 89.7 | 0.2 | -3.99 | 0.69 | 0.65 | — | 4.2 | 0.002 | 0.64 | 0.0 | 0.04 | 4.43 | 0.00 | 2.303 | 1.11 | 0.00 | 7.1 | 92.9 | 0.0 | 1.99 | 1.65 | 0.86 | 0.78 | — | 17122 | 3386 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U68 | 20662 | 2021-01-05 | 2019-08-29 | 4.5 | 4.54 | — | 4.5 | 0.006 | 0.90 | 0.0 | 0.06 | 4.27 | 0.00 | 2.419 | 0.46 | 0.00 | 2.6 | 97.3 | 0.1 | -3.82 | 0.71 | 0.71 | — | 4.4 | 0.004 | 0.75 | 0.0 | 0.05 | 4.50 | 0.00 | 2.291 | 3.87 | 0.00 | 8.1 | 91.9 | 0.0 | -0.74 | 1.83 | 0.76 | 0.79 | — | 10489 | 2133 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RLB | 4918 | 2021-01-06 | 2019-05-01 | 4.5 | 4.85 | 4.49 | 4.3 | 0.007 | 0.95 | 0.0 | 0.06 | 4.70 | 0.00 | 2.082 | 0.41 | 0.00 | 4.0 | 95.9 | 0.0 | -1.08 | 0.80 | 0.63 | — | 4.3 | 0.003 | 0.70 | 0.0 | 0.04 | 4.77 | 0.00 | 2.229 | 3.20 | 0.00 | 10.8 | 89.2 | 0.0 | -0.36 | 2.43 | 0.75 | 0.67 | — | 20407 | 4122 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VQi | 21351 | 2021-01-05 | 2020-02-05 | 4.3 | 4.89 | — | 4.2 | 0.005 | 1.14 | 0.0 | 0.05 | 3.90 | 0.01 | 2.327 | 1.95 | 0.00 | 1.3 | 98.2 | 0.5 | 2.16 | 0.56 | 0.73 | — | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 4.94 | 0.00 | 2.218 | 5.47 | 0.00 | 8.6 | 91.3 | 0.1 | 0.99 | 0.99 | 0.56 | 0.76 | — | 5278 | 1062 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VLZ | 8709 | 2021-01-06 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.67 | — | 4.4 | 0.003 | 0.76 | 0.0 | 0.00 | 4.99 | 0.00 | 2.275 | 1.13 | 0.00 | 5.1 | 94.9 | 0.0 | -0.94 | 2.07 | 0.81 | 0.77 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oEH | 20020 | 2021-01-07 | 2019-03-27 | 3.8 | 3.93 | — | 3.7 | 0.010 | 1.38 | 0.0 | 0.07 | 11.62 | 0.01 | 2.381 | 2.81 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.77 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.04 | 5.10 | 0.00 | 2.207 | 12.93 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.37 | 0.76 | — | 32900 | 0 | 14 | 0 | 6580 | 0 | 0 | logfile |
✔ | 6YW7 | 10960 | 2021-01-05 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 6.70 | 0.01 | 2.034 | 1.63 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 1.02 | 0.0 | 0.01 | 5.24 | 0.00 | 2.300 | 9.92 | 0.00 | 12.3 | 87.6 | 0.1 | -3.61 | 6.37 | 0.84 | 0.75 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 6oLL | 20116 | 2021-01-06 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.06 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.59 | — | 4.4 | 0.004 | 0.78 | 0.0 | 0.05 | 5.45 | 0.00 | 2.172 | 6.86 | 0.00 | 13.4 | 86.6 | 0.0 | -2.29 | 2.14 | 0.73 | 0.67 | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VAB | 21135 | 2021-01-05 | 2019-12-17 | 4.9 | 6.51 | — | 6.8 | 0.005 | 0.92 | 0.0 | 0.06 | 8.70 | 0.01 | 2.264 | 14.98 | 0.00 | 6.8 | 93.2 | 0.0 | -3.84 | 0.71 | 0.69 | — | 6.7 | 0.004 | 0.72 | 0.0 | 0.04 | 5.46 | 0.00 | 2.121 | 8.45 | 0.00 | 9.1 | 90.9 | 0.0 | -1.18 | 2.93 | 0.71 | 0.64 | — | 4642 | 938 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TTP | 8467 | 2021-01-05 | 2016-11-04 | 4.8 | 4.88 | — | 4.5 | 0.006 | 1.36 | 0.0 | 0.06 | 11.70 | 0.01 | 2.038 | 21.76 | 0.00 | 14.1 | 85.2 | 0.7 | -5.87 | 0.61 | 0.60 | — | 4.6 | 0.002 | 0.76 | 0.0 | 0.04 | 5.51 | 0.00 | 2.267 | 6.32 | 0.00 | 9.8 | 90.2 | 0.0 | 1.32 | 1.78 | 0.61 | 0.64 | — | 5616 | 1138 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QPi | 4614 | 2021-01-05 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.004 | 0.57 | 0.0 | 0.04 | 5.55 | 0.00 | 2.452 | 1.49 | 0.00 | 2.8 | 97.2 | 0.0 | 0.26 | 1.21 | 0.42 | 0.63 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oEF | 20020 | 2021-01-07 | 2019-03-27 | 3.8 | 3.98 | — | 3.8 | 0.007 | 1.67 | 0.0 | 0.07 | 11.76 | 0.01 | 2.376 | 3.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.47 | 0.78 | — | 3.8 | 0.006 | 1.18 | 0.0 | 0.05 | 5.88 | 0.00 | 2.195 | 7.70 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.60 | 0.48 | 0.79 | — | 51240 | 0 | 14 | 0 | 10248 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2021-01-06 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.52 | 0.0 | 0.41 | 5.92 | 0.00 | 2.134 | 43.68 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.30 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 5N8Y | 3602 | 2021-01-06 | 2017-02-24 | 4.7 | 4.76 | — | 4.7 | 0.017 | 2.39 | 6.0 | 0.08 | 7.59 | 0.01 | 0.788 | 15.95 | 0.00 | 4.2 | 94.4 | 1.4 | -1.65 | 0.65 | 0.64 | — | 4.7 | 0.003 | 0.82 | 0.0 | 0.04 | 6.03 | 0.00 | 2.260 | 3.81 | 0.00 | 10.9 | 89.1 | 0.0 | -2.42 | 4.71 | 0.74 | 0.77 | — | 23514 | 4752 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JG8 | 22314 | 2021-01-06 | 2020-07-18 | 3.3 | 2.35 | 3.37 | 3.3 | 0.009 | 1.68 | 0.0 | 3.30 | 7.41 | 0.01 | 2.424 | 0.51 | 0.00 | 3.2 | 96.6 | 0.2 | -1.30 | 0.62 | 0.55 | — | 3.4 | 0.003 | 1.21 | 0.0 | 1.22 | 6.08 | 0.00 | 2.102 | 1.58 | 0.00 | 9.6 | 90.3 | 0.1 | -1.40 | 1.32 | 0.71 | 0.69 | — | 19573 | 4827 | 26 | 0 | 7 | 0 | 0 | logfile |
✔ | 6CoZ | 7545 | 2021-01-05 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.004 | 0.88 | 0.0 | 0.04 | 6.14 | 0.00 | 2.319 | 9.28 | 0.00 | 17.9 | 82.1 | 0.0 | -2.45 | 1.69 | 0.82 | 0.76 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |