Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UXB	20932	2021-08-08	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	6.0	0.002	0.58	0.0	0.05	3.11	0.00	2.367	2.06	0.00	2.7	97.3	0.0	2.63	2.34	0.76	0.73	—	10344	2104	8	0	0	0	0	logfile
✔	7KPW	22990	2021-08-07	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.28	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.002	0.61	0.0	0.04	3.64	0.00	2.242	0.66	0.00	7.8	91.6	0.6	2.26	2.01	0.81	0.80	—	4313	865	1	0	0	0	0	logfile
✔	6UXA	20931	2021-08-08	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	6.0	0.002	0.66	0.0	0.05	3.77	0.00	2.164	5.91	0.00	3.6	96.4	0.0	2.00	4.60	0.72	0.66	—	10344	2104	8	0	0	0	0	logfile
✔	6VQi	21351	2021-08-07	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.003	0.58	0.0	0.03	4.23	0.00	2.229	3.52	0.00	5.7	94.2	0.1	2.19	1.39	0.57	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	6U68	20662	2021-08-08	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.46	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.4	0.003	0.74	0.0	0.05	4.30	0.00	2.311	3.47	0.00	7.5	92.5	0.0	-0.48	1.83	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	6YW7	10960	2021-08-07	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	1.63	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.002	0.93	0.0	0.01	4.53	0.00	2.511	1.09	0.00	6.4	93.5	0.1	-3.67	6.36	0.85	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	7DZW	30915	2021-08-08	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	1.99	0.00	5.1	93.3	1.6	-1.27	0.44	0.26	—	3.3	0.003	0.78	0.0	0.00	4.55	0.00	2.226	2.34	0.00	11.4	88.5	0.1	-1.82	2.18	0.76	0.74	—	13452	3363	3	0	0	0	0	logfile
✔	6iG9	9664	2021-08-08	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.65	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.3	0.002	0.65	0.0	0.04	4.56	0.00	2.266	1.47	0.00	7.7	92.3	0.0	1.81	1.67	0.89	0.82	—	17122	3386	1	0	0	0	0	logfile
✔	6VAB	21135	2021-08-07	2019-12-17	4.9	6.51	—	6.8	0.005	0.92	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.7	0.003	0.68	0.0	0.04	4.99	0.00	2.162	7.12	0.00	6.8	93.2	0.0	-0.50	2.87	0.74	0.70	—	4642	938	4	0	0	0	0	logfile
✔	5VCA	8659	2021-08-08	2017-03-31	4.8	6.04	—	5.9	0.021	2.65	50.0	0.15	5.91	0.01	1.097	1.93	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.9	0.003	0.67	0.0	0.04	5.02	0.00	2.213	4.98	0.00	10.0	89.9	0.2	0.31	2.90	0.74	0.66	—	16080	3264	6	0	0	0	0	logfile
✔	6oEH	20020	2021-08-10	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.6	0.007	1.05	0.0	0.04	5.10	0.00	2.208	12.88	0.00	0.0	0.0	0.0	—	0.56	0.41	0.81	—	32900	0	14	0	6580	0	0	logfile
✔	6QPi	4614	2021-08-07	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.52	0.0	0.04	5.17	0.00	2.483	1.49	0.00	2.8	97.2	0.0	0.96	1.21	0.42	0.63	—	2288	462	2	0	0	0	0	logfile
✔	6CoZ	7545	2021-08-07	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.5	0.003	0.85	0.0	0.04	5.26	0.00	2.361	3.54	0.00	11.5	88.5	0.0	-1.90	1.67	0.83	0.78	—	1586	320	2	0	0	0	0	logfile
✔	6oLL	20116	2021-08-09	2019-04-16	4.1	4.59	—	4.4	0.004	1.06	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.59	—	4.4	0.003	0.77	0.0	0.04	5.35	0.00	2.210	5.59	0.00	15.4	84.6	0.0	-2.72	2.16	0.73	0.67	—	10426	2114	6	0	0	0	0	logfile
✔	6X64	22069	2021-08-08	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.41	0.00	2.105	10.80	0.00	0.0	0.0	0.0	—	2.35	0.70	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	6ZD0	11172	2021-08-07	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	9.96	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.72	0.0	0.04	5.47	0.00	2.369	6.07	0.00	9.1	90.7	0.2	-3.20	2.04	0.53	0.51	—	7962	1611	6	0	0	0	0	logfile
✔	6SH5	10194	2021-08-08	2019-08-05	4.6	4.70	—	4.5	0.005	0.97	0.0	0.05	5.65	0.01	2.474	2.35	0.00	9.0	91.0	0.0	-3.63	0.80	0.76	—	4.5	0.004	0.80	0.0	0.04	5.55	0.00	2.265	5.30	0.00	15.9	84.1	0.0	-2.30	1.61	0.78	0.79	—	11529	2338	7	0	0	0	0	logfile
✔	7DZY	30921	2021-08-08	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	2.73	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.92	0.0	0.00	5.76	0.00	2.163	3.65	0.00	14.0	85.9	0.1	-3.26	2.39	0.70	0.73	—	18708	4677	9	0	0	0	0	logfile
✔	6RLB	4918	2021-08-09	2019-05-01	4.5	4.85	4.50	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.41	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.2	0.004	0.79	0.0	0.04	5.86	0.00	2.182	5.24	0.00	13.9	86.1	0.0	-1.39	2.45	0.85	0.70	—	20407	4122	14	0	0	0	0	logfile
✔	6PWC	20505	2021-08-07	2019-07-22	4.9	5.55	—	4.5	0.003	0.70	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.65	0.0	0.04	5.88	0.00	2.183	10.94	0.00	5.1	94.9	0.0	0.41	2.65	0.64	0.77	—	5879	1055	5	0	0	0	0	logfile

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