Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UXB	20932	2021-05-03	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	6.0	0.002	0.58	0.0	0.05	2.95	0.00	2.400	2.26	0.00	1.9	98.1	0.0	2.93	2.33	0.76	0.72	—	10344	2104	8	0	0	0	0	logfile
✔	6UXA	20931	2021-05-03	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	6.0	0.002	0.63	0.0	0.05	3.30	0.00	2.242	3.25	0.00	2.5	97.5	0.0	2.65	4.60	0.71	0.65	—	10344	2104	8	0	0	0	0	logfile
✔	6oG3	20051	2021-05-03	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.002	0.66	0.0	0.00	4.56	0.00	2.650	3.04	0.00	4.9	95.1	0.0	0.48	2.10	0.67	0.85	—	1215	396	4	0	9	0	0	logfile
✔	6iG9	9664	2021-05-04	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.65	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.3	0.002	0.66	0.0	0.04	4.85	0.00	2.236	1.71	0.00	7.8	92.2	0.0	1.42	1.68	0.85	0.80	—	17122	3386	1	0	0	0	0	logfile
✔	6SH4	10193	2021-05-04	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.75	0.0	0.04	4.93	0.00	2.224	1.65	0.00	8.9	90.8	0.3	-0.26	2.30	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	6CoZ	7545	2021-05-03	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.83	0.0	0.04	5.05	0.00	2.337	3.54	0.00	11.5	88.5	0.0	-1.17	1.64	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	6oEH	20020	2021-05-06	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.6	0.007	1.05	0.0	0.04	5.10	0.00	2.207	12.83	0.00	0.0	0.0	0.0	—	0.56	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	6YW7	10960	2021-05-03	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	1.63	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.99	0.0	0.01	5.30	0.00	2.336	9.92	0.00	16.8	83.0	0.2	-3.04	6.98	0.80	0.74	—	5426	1788	9	0	2	0	0	logfile
✔	6SH5	10194	2021-05-04	2019-08-05	4.6	4.70	—	4.5	0.005	0.97	0.0	0.05	5.65	0.01	2.474	2.35	0.00	9.0	91.0	0.0	-3.63	0.80	0.76	—	4.5	0.004	0.80	0.0	0.04	5.36	0.00	2.268	5.30	0.00	13.2	86.8	0.0	-2.15	1.62	0.81	0.81	—	11529	2338	7	0	0	0	0	logfile
✔	6oLM	20117	2021-05-04	2019-04-16	4.4	5.29	—	4.3	0.012	1.28	0.0	0.06	6.94	0.01	2.397	0.92	0.00	2.0	98.0	0.0	-0.33	0.89	0.79	—	4.3	0.003	0.67	0.0	0.04	5.45	0.00	2.184	12.39	0.00	6.8	93.2	0.0	-0.04	1.61	0.91	0.82	—	10602	2112	12	0	6	0	0	logfile
✔	6VAB	21135	2021-05-03	2019-12-17	4.9	6.51	—	6.8	0.005	0.92	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.7	0.003	0.70	0.0	0.04	5.47	0.00	2.123	7.86	0.00	7.8	92.2	0.0	-1.26	2.93	0.73	0.69	—	4642	938	4	0	0	0	0	logfile
✔	6X64	22069	2021-05-04	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.010	1.26	0.0	0.05	5.50	0.00	2.101	11.47	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	6RRS	4989	2021-05-05	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.003	0.71	0.0	0.00	5.51	0.00	2.264	1.84	0.00	10.9	89.1	0.0	-0.49	1.78	0.72	0.75	—	93060	23220	180	0	0	0	0	logfile
✔	5TTP	8467	2021-05-03	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	21.76	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.003	0.78	0.0	0.04	5.56	0.00	2.213	7.05	0.00	11.1	88.9	0.0	1.71	1.75	0.67	0.71	—	5616	1138	2	0	0	0	0	logfile
✔	5N8Y	3602	2021-05-05	2017-02-24	4.7	4.76	—	4.7	0.017	2.39	6.0	0.08	7.59	0.01	0.788	15.95	0.00	4.2	94.4	1.4	-1.65	0.65	0.64	—	4.7	0.003	0.78	0.0	0.04	5.57	0.00	2.308	3.55	0.00	9.1	90.8	0.0	-1.73	4.70	0.74	0.80	—	23514	4752	24	0	0	0	0	logfile
✔	6QPi	4614	2021-05-03	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.004	0.57	0.0	0.04	5.67	0.00	2.438	1.49	0.00	2.8	97.2	0.0	0.06	1.21	0.41	0.64	—	2288	462	2	0	0	0	0	logfile
✔	6VQi	21351	2021-05-03	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.005	0.74	0.0	0.04	5.75	0.00	2.190	7.55	0.00	9.0	90.9	0.1	-0.52	1.02	0.57	0.73	—	5278	1062	8	0	0	0	0	logfile
✔	6oEF	20020	2021-05-07	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.18	0.0	0.05	5.87	0.00	2.195	7.67	0.00	0.0	0.0	0.0	—	0.60	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	4UQ8	2676	2021-05-05	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.51	0.0	0.41	5.93	0.00	2.133	43.42	0.00	0.0	0.0	0.0	—	2.30	0.62	0.84	—	28647	33	54	0	5686	0	0	logfile
✔	6RLB	4918	2021-05-04	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.41	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.2	0.004	0.80	0.0	0.04	5.96	0.00	2.185	5.71	0.00	14.6	85.4	0.1	-1.43	2.46	0.82	0.74	—	20407	4122	14	0	0	0	0	logfile

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