Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PZi	20535	2023-04-20	2019-07-31	4.5	4.80	—	4.4	0.005	1.13	0.0	0.05	7.87	0.01	2.253	2.60	0.00	6.3	93.7	0.0	-3.83	0.67	0.80	—	4.4	0.003	0.66	0.0	0.04	7.97	0.00	2.154	7.80	0.00	3.6	96.4	0.0	1.80	0.57	0.68	0.84	—	7985	1412	1	0	1	0	0	logfile
✔	6oG3	20051	2023-04-19	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.11	0.0	0.00	8.01	0.00	2.615	51.00	0.00	13.0	87.0	0.0	-1.64	2.16	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	7NT6	12584	2023-04-27	2021-03-09	4.3	4.34	3.99	3.3	0.012	2.07	0.0	0.15	8.75	0.01	2.119	1.13	0.00	4.0	95.6	0.3	-2.44	0.72	0.76	—	3.3	0.002	0.62	0.0	0.05	8.09	0.00	2.161	2.67	0.00	4.4	95.6	0.0	1.97	0.64	0.71	0.71	—	24128	5582	17	90	0	0	0	logfile
✔	6DJP	7939	2023-04-20	2018-05-25	4.8	5.02	—	4.8	0.012	2.01	0.0	0.08	4.72	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.007	1.19	0.0	0.05	8.16	0.01	2.172	17.74	0.00	22.8	77.2	0.1	-4.06	1.20	0.82	0.76	—	7307	1393	16	0	23	0	0	logfile
✔	7R9K	24328	2023-04-20	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.004	0.59	0.0	0.04	8.20	0.00	1.791	11.91	0.00	6.4	93.6	0.0	-0.32	1.79	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7R9U	24331	2023-04-20	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.002	0.50	0.0	0.04	8.43	0.00	2.006	8.03	0.00	2.6	97.4	0.0	0.60	2.37	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	7EU8	31309	2023-04-24	2021-05-16	4.07	4.11	—	3.6	0.002	0.42	0.0	0.10	7.80	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.002	0.62	0.0	0.06	8.46	0.00	2.129	7.57	0.00	3.8	96.0	0.2	0.14	1.37	0.79	0.69	—	18670	3010	8	0	8	0	0	logfile
✔	6Q0J	20550	2023-04-20	2019-08-01	4.9	4.69	—	4.1	0.012	1.53	3.0	0.09	8.17	0.00	2.229	2.10	0.00	5.4	93.3	1.3	-2.84	0.74	0.63	—	4.2	0.003	0.67	0.0	0.04	8.63	0.00	1.913	6.90	0.00	7.0	92.6	0.4	-0.12	1.64	0.85	0.80	—	8213	1633	8	0	6	0	0	logfile
✔	6PZB	20533	2023-04-20	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.004	0.71	0.0	0.04	8.72	0.00	1.992	8.78	0.00	6.4	93.6	0.0	0.88	0.59	0.64	0.78	—	7747	1357	1	0	0	0	0	logfile
✔	6HYP	0309	2023-04-22	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.004	0.79	0.0	0.04	8.88	0.00	1.995	5.56	0.00	13.4	86.3	0.2	-1.62	0.63	0.77	0.75	—	12392	2082	1	0	192	0	0	logfile
✔	7A96	11686	2023-04-29	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.91	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.002	0.63	0.0	0.04	9.04	0.00	2.114	10.16	0.00	3.3	96.6	0.0	-0.85	0.87	0.89	0.82	—	29811	3783	4	0	0	0	0	logfile
✔	7R9E	24324	2023-04-20	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.56	0.0	0.04	9.08	0.00	2.177	7.90	0.00	5.0	95.0	0.0	0.09	1.76	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	6XTB	10618	2023-04-19	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	7R9M	24329	2023-04-20	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.14	0.00	2.110	9.06	0.00	2.6	97.4	0.0	-0.08	1.73	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	7BZX	30262	2023-04-20	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.8	0.006	1.18	0.0	0.05	9.20	0.01	2.035	27.91	0.00	24.1	75.8	0.1	-4.93	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	6UVS	20915	2023-04-24	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	2.19	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.002	0.62	0.0	0.04	9.23	0.01	1.899	1.10	0.00	7.2	92.8	0.0	2.03	0.86	0.73	0.85	—	17040	1920	12	0	0	0	5976	logfile
✔	5J8V	8073	2023-04-27	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	0.96	4.0	0.04	9.37	0.00	2.173	6.74	0.32	9.5	88.8	1.7	0.19	0.81	0.75	0.74	—	73616	13812	4	0	0	0	0	logfile
✔	7ABH	11696	2023-04-24	2020-09-07	4.5	4.60	—	4.4	0.003	0.63	0.0	0.05	9.27	0.00	1.529	2.09	0.00	6.0	93.7	0.2	-2.78	0.75	0.77	—	4.4	0.003	0.65	0.0	0.04	9.66	0.00	2.165	3.43	0.00	9.0	91.0	0.0	-0.47	1.31	0.77	0.80	—	17922	3288	16	65	0	0	0	logfile
✔	6K9L	9950	2023-04-29	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.79	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.68	0.0	0.04	9.69	0.00	2.113	12.22	0.00	7.1	92.9	0.0	0.72	1.80	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	6Y50	10688	2023-04-23	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.005	0.73	0.0	0.05	9.80	0.01	1.964	10.01	0.27	14.1	85.8	0.1	-1.88	0.56	0.71	0.74	—	14916	2537	10	50	3	0	0	logfile

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