Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NT6	12584	2022-07-05	2021-03-09	4.3	4.34	3.99	3.3	0.012	2.07	0.0	0.15	8.75	0.01	2.119	1.13	0.00	4.0	95.6	0.3	-2.44	0.72	0.76	—	3.2	0.003	0.66	0.0	0.05	8.24	0.00	2.143	3.83	0.00	6.3	93.7	0.0	2.06	0.62	0.71	0.72	—	24128	5582	17	90	0	0	0	logfile
✔	7BZX	30262	2022-07-03	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.004	1.07	0.0	0.05	8.41	0.00	2.068	18.09	0.00	18.4	81.5	0.1	-5.13	3.15	0.75	0.57	—	5652	1154	2	0	0	0	0	logfile
✔	6oG3	20051	2022-07-02	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.006	1.22	0.0	0.00	8.59	0.00	2.605	57.07	0.00	14.1	85.9	0.0	-1.78	2.19	0.66	0.84	—	1215	396	4	0	9	0	0	logfile
✔	6PZB	20533	2022-07-03	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.003	0.67	0.0	0.04	8.60	0.00	1.999	7.02	0.00	5.3	94.7	0.0	1.22	0.58	0.64	0.77	—	7747	1357	1	0	0	0	0	logfile
✔	7R9U	24331	2022-07-03	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.003	0.53	0.0	0.04	8.66	0.00	1.913	10.10	0.00	3.8	96.2	0.0	0.26	2.39	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	7A95	11685	2022-07-06	2020-09-01	4.3	4.83	4.39	4.3	0.003	0.47	2.0	0.04	5.77	0.00	2.226	3.56	0.90	11.0	89.0	0.0	-4.57	0.87	0.78	—	4.4	0.004	0.65	0.0	0.04	8.67	0.00	2.134	9.98	0.00	4.7	95.2	0.1	-0.90	2.04	0.89	0.84	—	29887	3794	4	0	0	0	0	logfile
✔	7R9E	24324	2022-07-03	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.58	0.0	0.04	9.06	0.00	2.156	9.58	0.00	5.2	94.8	0.0	0.03	2.07	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	7A97	11687	2022-07-06	2020-09-01	4.4	5.14	4.59	4.5	0.002	0.48	1.0	0.04	5.51	0.00	2.074	4.94	0.26	10.3	89.7	0.0	-4.43	0.88	0.78	—	4.5	0.003	0.68	0.0	0.04	9.13	0.00	2.109	12.55	0.03	4.0	96.0	0.0	-1.10	2.57	0.90	0.83	—	34626	4373	5	0	0	0	0	logfile
✔	7MJQ	23882	2022-07-04	2021-04-20	4.2	4.29	—	4.2	0.009	1.55	0.0	0.15	8.06	0.01	1.552	6.01	0.00	9.4	90.6	0.0	-1.25	0.52	0.66	—	4.2	0.006	1.03	0.0	0.05	9.14	0.00	2.141	3.62	0.00	15.0	85.0	0.0	-2.69	0.67	0.60	0.76	—	14976	2982	13	0	10	0	0	logfile
✔	6EZo	4162	2022-07-04	2017-11-16	4.1	4.20	4.05	4.2	0.008	1.36	4.0	0.09	10.29	0.01	1.569	8.95	3.41	18.5	80.8	0.8	-5.42	0.78	0.79	—	4.1	0.007	0.93	1.0	0.05	9.19	0.00	2.136	4.49	0.00	13.3	86.7	0.1	-2.74	0.46	0.77	0.77	—	18758	3367	11	0	1	0	0	logfile
✔	7A96	11686	2022-07-06	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.96	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.003	0.69	0.0	0.04	9.30	0.00	2.090	14.29	0.00	4.6	95.4	0.0	-1.29	0.94	0.89	0.83	—	29811	3783	4	0	0	0	0	logfile
✔	7R9M	24329	2022-07-03	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.55	0.0	0.04	9.36	0.00	2.104	9.58	0.00	3.4	96.6	0.0	-0.01	1.74	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	6UVS	20915	2022-07-04	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	2.19	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.003	0.65	0.0	0.04	9.41	0.01	1.893	1.21	0.00	10.5	89.5	0.0	1.45	0.87	0.73	0.86	—	17040	1920	12	0	0	0	5976	logfile
✔	6DJP	7939	2022-07-03	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.009	1.27	0.0	0.05	9.47	0.01	2.140	24.14	0.00	24.7	74.7	0.6	-4.67	1.25	0.82	0.77	—	7307	1393	8	0	23	0	0	logfile
✔	7ABH	11696	2022-07-04	2020-09-07	4.5	4.60	—	4.4	0.003	0.63	0.0	0.05	9.27	0.00	1.529	2.09	0.00	6.0	93.7	0.2	-2.78	0.75	0.77	—	4.4	0.002	0.63	0.0	0.04	9.50	0.00	2.174	3.05	0.00	6.2	93.8	0.0	-0.31	1.29	0.77	0.80	—	17922	3288	16	65	0	0	0	logfile
✔	7Fii	31598	2022-07-03	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.57	0.0	0.04	9.50	0.00	2.272	5.60	0.00	3.6	96.4	0.0	1.07	0.67	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile
✔	6Y50	10688	2022-07-04	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.004	0.67	0.0	0.05	9.54	0.00	2.003	8.78	0.00	11.0	88.9	0.1	-1.71	0.52	0.71	0.73	—	14916	2537	10	50	3	0	0	logfile
✔	6X34	22017	2022-07-06	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.87	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.003	0.65	0.0	0.04	9.64	0.00	2.095	12.85	0.00	4.0	96.0	0.0	0.40	0.92	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	5LiJ	4054	2022-07-02	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.61	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.12	0.0	0.04	9.66	0.00	2.166	11.82	0.00	32.0	68.0	0.0	-5.62	1.49	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6PKW	20368	2022-07-05	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.19	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.002	0.56	0.0	0.04	9.71	0.00	2.189	6.89	0.00	4.2	95.8	0.0	2.08	1.62	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile

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