Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6EZo	4162	2022-04-06	2017-11-16	4.1	4.20	4.05	4.2	0.008	1.36	4.0	0.09	10.29	0.01	1.569	8.78	3.41	18.5	80.8	0.8	-5.42	0.78	0.79	—	4.1	0.007	0.93	1.0	0.05	9.19	0.00	2.136	4.32	0.00	13.3	86.7	0.1	-2.74	0.46	0.77	0.77	—	18758	3367	11	0	1	0	0	logfile
✔	7A96	11686	2022-04-07	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.91	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.003	0.69	0.0	0.04	9.30	0.00	2.090	14.15	0.00	4.6	95.4	0.0	-1.29	0.94	0.89	0.83	—	29811	3783	4	0	0	0	0	logfile
✔	7R9M	24329	2022-04-04	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.55	0.0	0.04	9.36	0.00	2.104	9.45	0.00	3.4	96.6	0.0	-0.01	1.74	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	6UVS	20915	2022-04-06	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	2.19	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.003	0.65	0.0	0.04	9.41	0.01	1.893	1.21	0.00	10.5	89.5	0.0	1.45	0.87	0.73	0.86	—	17040	1920	12	0	0	0	5976	logfile
✔	6DJP	7939	2022-04-04	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.009	1.27	0.0	0.05	9.47	0.01	2.140	24.14	0.00	24.7	74.7	0.6	-4.67	1.25	0.82	0.77	—	7307	1393	8	0	23	0	0	logfile
✔	7ABH	11696	2022-04-06	2020-09-07	4.5	4.60	—	4.4	0.003	0.63	0.0	0.05	9.27	0.00	1.529	2.09	0.00	6.0	93.7	0.2	-2.78	0.75	0.77	—	4.4	0.002	0.63	0.0	0.04	9.50	0.00	2.174	3.05	0.00	6.2	93.8	0.0	-0.31	1.29	0.77	0.80	—	17922	3288	16	65	0	0	0	logfile
✔	7Fii	31598	2022-04-05	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.52	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.57	0.0	0.04	9.50	0.00	2.272	5.60	0.00	3.6	96.4	0.0	1.07	0.67	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile
✔	6Y50	10688	2022-04-05	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.004	0.67	0.0	0.05	9.54	0.00	2.003	8.73	0.00	11.0	88.9	0.1	-1.71	0.52	0.71	0.73	—	14916	2537	10	50	3	0	0	logfile
✔	6X34	22017	2022-04-09	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.75	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.003	0.65	0.0	0.04	9.64	0.00	2.095	12.58	0.00	4.0	96.0	0.0	0.40	0.92	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	5LiJ	4054	2022-04-04	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.61	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.12	0.0	0.04	9.66	0.00	2.166	11.82	0.00	32.0	68.0	0.0	-5.62	1.49	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6PKW	20368	2022-04-07	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.06	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.002	0.56	0.0	0.04	9.71	0.00	2.189	6.74	0.00	4.2	95.8	0.0	2.08	1.62	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile
✔	7JW0	22512	2022-04-07	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.51	6.0	0.09	8.08	0.01	2.527	0.37	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.005	0.69	0.0	0.05	9.81	0.00	2.135	6.58	0.00	4.4	95.6	0.0	0.02	1.28	0.85	0.80	—	26251	4314	27	0	69	0	0	logfile
✔	5Y81	6816	2022-04-08	2017-08-18	4.7	4.77	—	4.6	0.012	1.24	3.0	0.06	11.53	0.01	1.581	41.16	14.19	15.5	79.2	5.3	-5.73	0.66	0.69	—	4.6	0.005	0.88	0.0	0.04	9.92	0.00	2.027	11.16	0.10	10.0	89.0	1.0	0.55	0.83	0.70	0.73	—	25723	4095	8	0	360	0	0	logfile
✔	6K9L	9950	2022-04-07	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.75	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.003	0.70	0.0	0.04	9.93	0.00	2.093	13.21	0.00	8.3	91.7	0.0	0.47	1.81	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	6WBi	21590	2022-04-05	2020-03-26	4.39	4.98	—	3.3	0.015	0.91	0.0	0.04	10.97	0.01	2.117	12.12	1.00	4.8	95.1	0.0	-0.82	0.70	0.80	—	3.3	0.002	0.61	0.0	0.04	9.93	0.00	2.197	5.87	0.00	3.2	96.8	0.0	3.29	0.52	0.72	0.84	—	13018	2284	8	0	1	0	0	logfile
✔	6PKV	20367	2022-04-07	2019-06-30	4.3	4.49	—	4.3	0.005	0.86	0.0	0.05	8.98	0.01	2.311	3.43	0.00	4.7	95.3	0.0	-3.45	0.67	0.78	—	4.3	0.002	0.56	0.0	0.04	9.94	0.00	2.255	6.16	0.00	4.1	95.9	0.0	1.40	1.92	0.67	0.77	—	28284	4260	4	0	88	0	0	logfile
✔	6VE2	21152	2022-04-07	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.007	1.24	0.0	0.05	10.04	0.01	2.049	33.59	0.00	21.9	77.6	0.6	-4.75	1.35	0.89	0.76	—	30198	6153	21	0	0	0	0	logfile
✔	5V4S	8633	2022-04-05	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	4.2	0.003	0.60	0.0	0.04	10.13	0.00	2.227	12.47	0.00	2.0	98.0	0.0	3.34	0.84	0.62	0.70	—	10756	1548	4	0	0	0	0	logfile
✔	6NB7	0404	2022-04-07	2018-12-06	4.5	4.89	—	4.6	0.015	1.44	1.0	0.09	9.14	0.01	2.330	0.87	0.97	3.2	96.6	0.2	0.24	0.80	0.71	—	4.6	0.006	0.79	0.0	0.05	10.14	0.00	2.095	10.33	0.00	6.0	93.9	0.1	-0.32	0.82	0.83	0.79	—	24718	3828	12	0	137	0	0	logfile
✔	6PSN	20459	2022-04-08	2019-07-12	4.6	4.92	—	4.6	0.006	0.93	0.0	0.06	9.42	0.01	2.107	7.18	0.65	3.2	96.8	0.0	-1.98	0.81	0.80	—	4.6	0.002	0.59	0.0	0.04	10.28	0.00	2.102	11.01	0.00	3.5	96.5	0.0	-0.20	2.25	0.81	0.77	—	32830	4154	15	0	14	0	0	logfile

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