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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7FiJ | 31599 | 2023-12-07 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.6 | 0.003 | 0.71 | 0.0 | 0.04 | 10.87 | 0.00 | 2.234 | 8.95 | 1.25 | 10.6 | 89.4 | 0.0 | -0.78 | 0.63 | 0.60 | 0.54 | 2.95 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PZC | 20534 | 2023-12-08 | 2019-07-31 | 4.34 | 4.63 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 11.22 | 0.01 | 2.137 | 7.52 | 0.42 | 9.7 | 90.3 | 0.0 | -5.15 | 0.60 | 0.54 | — | 4.4 | 0.004 | 0.76 | 0.0 | 0.04 | 10.87 | 0.00 | 2.109 | 14.74 | 0.00 | 6.0 | 94.0 | 0.1 | 0.10 | 1.60 | 0.71 | 0.78 | — | 7456 | 1173 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UPi | 26667 | 2023-12-08 | 2022-04-15 | 2.89 | 3.71 | 2.90 | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 9.09 | 0.00 | 1.843 | 2.56 | 0.00 | 1.9 | 98.1 | 0.0 | -0.12 | 0.91 | 0.87 | 3.97 | 3.2 | 0.002 | 0.56 | 0.0 | 0.04 | 10.89 | 0.00 | 2.006 | 4.22 | 0.11 | 2.1 | 97.9 | 0.0 | -0.22 | 2.21 | 0.90 | 0.89 | 3.98 | 7775 | 972 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 8ARi | 15603 | 2023-12-09 | 2022-08-16 | 3.0 | 3.68 | 3.06 | 3.4 | 0.003 | 0.50 | 0.0 | 0.04 | 9.10 | 0.00 | 2.254 | 2.40 | 0.38 | 4.2 | 95.7 | 0.1 | -0.94 | 0.89 | 0.88 | 4.79 | 3.4 | 0.004 | 0.49 | 0.0 | 0.04 | 10.91 | 0.00 | 2.107 | 2.51 | 0.47 | 4.0 | 96.0 | 0.0 | 0.09 | 0.94 | 0.87 | 0.92 | 3.80 | 63756 | 8160 | 58 | 0 | 24 | 0 | 0 | logfile |
✔ | 8B40 | 15835 | 2023-12-09 | 2022-09-19 | 4.6 | 4.13 | 4.51 | 3.6 | 0.002 | 0.50 | 0.0 | 0.04 | 10.45 | 0.00 | 2.149 | 11.85 | 4.31 | 4.2 | 95.7 | 0.0 | -0.38 | 0.77 | 0.69 | — | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 10.91 | 0.00 | 2.129 | 15.12 | 0.00 | 5.6 | 94.4 | 0.0 | -0.80 | 1.02 | 0.76 | 0.66 | — | 39466 | 4844 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoG | 32651 | 2023-12-07 | 2022-01-21 | 4.06 | 2.95 | — | 2.0 | 0.001 | 0.41 | 0.0 | 0.04 | 8.09 | 0.00 | 2.293 | 10.22 | 3.78 | 8.0 | 92.0 | 0.0 | -3.98 | 0.51 | 0.51 | — | 2.2 | 0.003 | 0.71 | 0.0 | 0.04 | 10.94 | 0.00 | 2.020 | 21.35 | 0.00 | 13.1 | 86.9 | 0.0 | -2.59 | 1.02 | 0.54 | 0.55 | — | 3362 | 433 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UP7 | 20836 | 2023-12-07 | 2019-10-16 | 4.2 | 4.33 | — | 4.2 | 0.008 | 1.08 | 0.0 | 0.06 | 10.47 | 0.01 | 2.216 | 9.73 | 0.00 | 13.2 | 86.8 | 0.0 | -5.14 | 0.79 | 0.80 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 10.95 | 0.00 | 2.228 | 11.98 | 0.00 | 9.6 | 90.4 | 0.0 | -1.68 | 1.20 | 0.78 | 0.80 | — | 4166 | 676 | 5 | 0 | 10 | 0 | 0 | logfile |
✔ | 6E9Y | 9020 | 2023-12-07 | 2018-08-01 | 4.3 | 4.50 | — | 4.3 | 0.008 | 0.73 | 0.0 | 0.04 | 7.51 | 0.00 | 1.433 | 25.35 | 0.00 | 3.1 | 96.9 | 0.0 | -3.58 | 0.75 | 0.80 | — | 4.3 | 0.003 | 0.50 | 0.0 | 0.03 | 10.98 | 0.00 | 2.058 | 9.04 | 0.00 | 1.1 | 98.9 | 0.0 | 2.75 | 1.49 | 0.76 | 0.82 | — | 54450 | 3405 | 15 | 0 | 0 | 0 | 28155 | logfile |
✔ | 6Y1A | 10669 | 2023-12-07 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.005 | 1.09 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.005 | 0.75 | 0.0 | 0.04 | 11.01 | 0.00 | 2.047 | 15.36 | 0.00 | 9.8 | 90.2 | 0.0 | -4.85 | 1.54 | 0.57 | 0.75 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 5A6F | 3063 | 2023-12-08 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.7 | 0.002 | 0.57 | 0.0 | 0.04 | 11.01 | 0.00 | 1.975 | 11.65 | 0.00 | 5.8 | 94.2 | 0.0 | -0.93 | 1.02 | 0.57 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |
✔ | 6CEB | 7463 | 2023-12-09 | 2018-02-11 | 4.7 | 5.92 | — | 4.7 | 0.006 | 1.02 | 0.0 | 0.06 | 9.96 | 0.01 | 1.288 | 8.80 | 0.00 | 11.8 | 88.0 | 0.2 | -3.39 | 0.88 | 0.82 | — | 4.7 | 0.005 | 0.83 | 0.0 | 0.05 | 11.07 | 0.00 | 2.120 | 27.97 | 0.00 | 13.3 | 86.7 | 0.0 | -2.58 | 2.07 | 0.89 | 0.85 | — | 11722 | 1406 | 20 | 0 | 30 | 0 | 0 | logfile |
✔ | 7R9o | 24330 | 2023-12-08 | 2021-06-29 | 4.0 | 4.66 | — | 4.0 | 0.002 | 0.38 | 0.0 | 0.04 | 4.49 | 0.00 | 2.252 | 2.85 | 0.25 | 10.5 | 88.7 | 0.8 | -4.93 | 0.83 | 0.71 | — | 4.0 | 0.003 | 0.62 | 0.0 | 0.04 | 11.10 | 0.00 | 1.929 | 10.88 | 0.25 | 3.4 | 96.6 | 0.0 | -0.54 | 3.44 | 0.88 | 0.83 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 6MET | 9109 | 2023-12-09 | 2018-09-07 | 4.5 | 4.68 | 4.22 | 4.4 | 0.007 | 1.08 | 0.0 | 0.07 | 10.38 | 0.01 | 1.985 | 12.02 | 1.37 | 8.0 | 91.5 | 0.5 | -4.19 | 0.58 | 0.54 | — | 4.4 | 0.003 | 0.79 | 0.0 | 0.05 | 11.12 | 0.00 | 2.106 | 16.35 | 0.00 | 7.0 | 92.9 | 0.1 | -1.81 | 1.23 | 0.69 | 0.81 | — | 8911 | 1074 | 14 | 0 | 32 | 0 | 0 | logfile |
✔ | 7CZ6 | 30507 | 2023-12-07 | 2020-09-07 | 4.1 | 4.04 | — | 4.1 | 0.009 | 1.62 | 0.0 | 0.05 | 8.57 | 0.01 | 1.047 | 61.25 | 0.00 | 8.1 | 91.9 | 0.0 | -1.66 | 0.68 | 0.64 | — | 4.1 | 0.004 | 0.84 | 0.0 | 0.05 | 11.13 | 0.01 | 2.108 | 15.25 | 0.00 | 5.5 | 94.5 | 0.0 | -2.13 | 0.91 | 0.65 | 0.72 | — | 4535 | 630 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NXD | 12637 | 2023-12-10 | 2021-03-18 | 4.6 | 8.22 | 6.02 | 6.0 | 0.013 | 1.51 | 0.0 | 0.11 | 9.83 | 0.03 | 1.831 | 64.77 | 1.03 | 4.0 | 96.0 | 0.1 | -1.02 | 0.80 | 0.44 | — | 6.0 | 0.003 | 0.77 | 0.0 | 0.05 | 11.15 | 0.00 | 1.919 | 22.90 | 0.07 | 6.0 | 94.0 | 0.0 | -0.78 | 1.18 | 0.89 | 0.73 | — | 12805 | 1595 | 18 | 0 | 48 | 0 | 0 | logfile |
✔ | 7FiK | 31600 | 2023-12-09 | 2021-07-31 | 3.7 | 3.41 | — | 2.2 | 0.007 | 0.98 | 1.0 | 0.05 | 9.93 | 0.00 | 1.868 | 3.44 | 3.73 | 6.0 | 93.8 | 0.2 | -2.13 | 0.50 | 0.52 | 1.35 | 2.2 | 0.002 | 0.60 | 0.0 | 0.04 | 11.18 | 0.00 | 2.017 | 5.54 | 0.21 | 3.9 | 96.1 | 0.0 | 1.53 | 0.65 | 0.60 | 0.69 | 1.62 | 116163 | 19039 | 32 | 0 | 722 | 0 | 0 | logfile |
✔ | 7PP6 | 13580 | 2023-12-10 | 2021-09-13 | 3.4 | 4.07 | — | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 12.33 | 0.00 | 1.846 | 6.09 | 0.19 | 9.2 | 90.8 | 0.0 | -2.04 | 0.77 | 0.76 | 1.96 | 3.6 | 0.002 | 0.55 | 0.0 | 0.04 | 11.19 | 0.00 | 1.954 | 6.85 | 0.27 | 8.4 | 91.6 | 0.0 | -1.35 | 0.38 | 0.78 | 0.80 | 1.84 | 66562 | 4592 | 22 | 0 | 28 | 92 | 31702 | logfile |
✔ | 7D9T | 30620 | 2023-12-08 | 2020-10-14 | 4.1 | 4.18 | — | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 11.03 | 0.00 | 2.230 | 6.74 | 0.00 | 3.9 | 96.1 | 0.0 | -1.91 | 0.84 | 0.81 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 11.23 | 0.00 | 2.139 | 8.23 | 0.00 | 3.4 | 96.6 | 0.0 | 0.98 | 0.47 | 0.85 | 0.82 | — | 7451 | 1079 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7YLU | 33917 | 2023-12-10 | 2022-07-27 | 4.55 | 4.26 | 5.68 | 4.4 | 0.002 | 0.44 | 0.0 | 0.04 | 6.30 | 0.00 | 1.304 | 3.45 | 0.11 | 1.9 | 98.0 | 0.1 | 2.63 | 0.69 | 0.62 | — | 4.4 | 0.004 | 0.77 | 0.0 | 0.05 | 11.23 | 0.00 | 2.032 | 20.60 | 0.07 | 4.0 | 95.9 | 0.1 | -0.01 | 1.19 | 0.74 | 0.71 | — | 65607 | 8578 | 17 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N52 | 0346 | 2023-12-09 | 2018-11-20 | 4.0 | 4.42 | — | 3.9 | 0.004 | 0.70 | 0.0 | 0.05 | 8.65 | 0.01 | 2.328 | 4.22 | 0.00 | 4.1 | 95.9 | 0.0 | -4.16 | 0.72 | 0.78 | — | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 11.27 | 0.00 | 2.216 | 10.76 | 0.00 | 4.9 | 95.1 | 0.0 | -0.45 | 1.61 | 0.73 | 0.81 | — | 11108 | 1548 | 4 | 0 | 4 | 0 | 0 | logfile |