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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HYP | 0309 | 2022-12-12 | 2018-10-22 | 4.4 | 4.53 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.05 | 8.72 | 0.00 | 1.943 | 1.67 | 0.34 | 7.3 | 92.2 | 0.4 | -5.99 | 0.75 | 0.69 | — | 4.4 | 0.002 | 0.67 | 0.0 | 0.04 | 8.23 | 0.00 | 2.173 | 3.43 | 0.00 | 7.0 | 92.9 | 0.1 | -1.16 | 0.61 | 0.76 | 0.73 | — | 12392 | 2082 | 1 | 0 | 192 | 0 | 0 | logfile |
✔ | 7NT6 | 12584 | 2022-12-15 | 2021-03-09 | 4.3 | 4.34 | 3.99 | 3.3 | 0.012 | 2.07 | 0.0 | 0.15 | 8.75 | 0.01 | 2.119 | 1.13 | 0.00 | 4.0 | 95.6 | 0.3 | -2.44 | 0.72 | 0.76 | — | 3.2 | 0.003 | 0.66 | 0.0 | 0.05 | 8.24 | 0.00 | 2.143 | 3.83 | 0.00 | 6.3 | 93.7 | 0.0 | 2.06 | 0.62 | 0.71 | 0.72 | — | 24128 | 5582 | 17 | 90 | 0 | 0 | 0 | logfile |
✔ | 7BZX | 30262 | 2022-12-11 | 2020-04-28 | 4.0 | 4.19 | — | 3.2 | 0.019 | 2.22 | 9.0 | 0.12 | 8.56 | 0.01 | 2.485 | 2.40 | 0.00 | 6.6 | 92.1 | 1.3 | -2.90 | 0.47 | 0.25 | — | 2.9 | 0.004 | 1.07 | 0.0 | 0.05 | 8.41 | 0.00 | 2.068 | 18.09 | 0.00 | 18.4 | 81.5 | 0.1 | -5.13 | 3.15 | 0.75 | 0.57 | — | 5652 | 1154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2022-12-14 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.66 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.71 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 1.17 | 0.0 | 0.04 | 8.49 | 0.00 | 2.196 | 5.78 | 0.32 | 12.5 | 85.4 | 2.2 | -1.41 | 0.81 | 0.75 | 0.75 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oG3 | 20051 | 2022-12-11 | 2019-04-01 | 4.1 | 5.37 | — | 6.5 | 0.005 | 1.53 | 0.0 | 0.00 | 0.93 | 0.00 | 2.539 | 0.00 | 0.00 | 0.0 | 99.2 | 0.8 | 0.27 | 0.46 | 0.48 | — | 6.0 | 0.006 | 1.22 | 0.0 | 0.00 | 8.59 | 0.00 | 2.605 | 57.07 | 0.00 | 14.1 | 85.9 | 0.0 | -1.78 | 2.19 | 0.66 | 0.84 | — | 1215 | 396 | 4 | 0 | 9 | 0 | 0 | logfile |
✔ | 6PZB | 20533 | 2022-12-11 | 2019-07-31 | 4.55 | 4.69 | — | 4.5 | 0.009 | 1.24 | 0.0 | 0.06 | 8.37 | 0.01 | 2.231 | 3.11 | 0.00 | 5.9 | 94.1 | 0.0 | -3.87 | 0.62 | 0.76 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.04 | 8.60 | 0.00 | 1.999 | 7.02 | 0.00 | 5.3 | 94.7 | 0.0 | 1.22 | 0.58 | 0.64 | 0.77 | — | 7747 | 1357 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Q0J | 20550 | 2022-12-12 | 2019-08-01 | 4.9 | 4.69 | — | 4.1 | 0.012 | 1.53 | 3.0 | 0.09 | 8.19 | 0.00 | 2.229 | 2.10 | 0.00 | 5.4 | 93.3 | 1.3 | -2.84 | 0.74 | 0.63 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 8.66 | 0.00 | 1.906 | 7.06 | 0.00 | 7.0 | 92.7 | 0.4 | -0.02 | 1.64 | 0.85 | 0.79 | — | 8213 | 1633 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 7R9U | 24331 | 2022-12-11 | 2021-06-29 | 4.4 | 5.41 | — | 4.3 | 0.002 | 0.34 | 0.0 | 0.04 | 4.36 | 0.00 | 2.248 | 3.50 | 0.00 | 9.1 | 90.3 | 0.6 | -4.49 | 0.78 | 0.62 | — | 4.3 | 0.003 | 0.53 | 0.0 | 0.04 | 8.66 | 0.00 | 1.913 | 10.10 | 0.00 | 3.8 | 96.2 | 0.0 | 0.26 | 2.39 | 0.91 | 0.84 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 7EU8 | 31309 | 2022-12-14 | 2021-05-16 | 4.07 | 4.11 | — | 3.6 | 0.002 | 0.41 | 0.0 | 0.04 | 8.07 | 0.00 | 2.206 | 3.16 | 3.51 | 2.0 | 97.9 | 0.1 | 1.10 | 0.75 | 0.61 | — | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 8.85 | 0.00 | 2.112 | 8.24 | 0.00 | 4.3 | 95.5 | 0.2 | -0.27 | 1.40 | 0.78 | 0.69 | — | 18670 | 3010 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7MJQ | 23882 | 2022-12-13 | 2021-04-20 | 4.2 | 4.29 | — | 4.2 | 0.009 | 1.55 | 0.0 | 0.15 | 8.06 | 0.01 | 1.552 | 6.01 | 0.00 | 9.4 | 90.6 | 0.0 | -1.25 | 0.52 | 0.66 | — | 4.2 | 0.005 | 0.94 | 0.0 | 0.05 | 8.95 | 0.01 | 2.135 | 4.68 | 0.00 | 16.8 | 83.1 | 0.1 | -2.77 | 1.83 | 0.60 | 0.76 | — | 14976 | 2982 | 13 | 0 | 10 | 0 | 0 | logfile |
✔ | 7A95 | 11685 | 2022-12-16 | 2020-09-01 | 4.3 | 4.83 | 4.39 | 4.3 | 0.003 | 0.47 | 2.0 | 0.04 | 5.77 | 0.00 | 2.226 | 3.56 | 0.90 | 11.0 | 89.0 | 0.0 | -4.57 | 0.87 | 0.78 | — | 4.4 | 0.002 | 0.60 | 0.0 | 0.04 | 9.01 | 0.00 | 2.143 | 7.98 | 0.00 | 3.6 | 96.4 | 0.1 | -0.75 | 1.74 | 0.89 | 0.84 | — | 29887 | 3794 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R9E | 24324 | 2022-12-11 | 2021-06-29 | 4.0 | 4.83 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.04 | 4.45 | 0.00 | 2.277 | 3.11 | 0.00 | 9.9 | 88.7 | 1.4 | -3.58 | 0.87 | 0.80 | — | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 9.06 | 0.00 | 2.156 | 9.58 | 0.00 | 5.2 | 94.8 | 0.0 | 0.03 | 2.07 | 0.88 | 0.82 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 7A97 | 11687 | 2022-12-19 | 2020-09-01 | 4.4 | 5.14 | 4.59 | 4.5 | 0.002 | 0.48 | 1.0 | 0.04 | 5.51 | 0.00 | 2.074 | 4.94 | 0.26 | 10.3 | 89.7 | 0.0 | -4.43 | 0.88 | 0.78 | — | 4.5 | 0.005 | 0.73 | 0.0 | 0.04 | 9.10 | 0.00 | 2.042 | 16.28 | 0.00 | 5.4 | 94.6 | 0.0 | -1.30 | 2.58 | 0.90 | 0.84 | — | 34626 | 4373 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7A96 | 11686 | 2022-12-16 | 2020-09-01 | 4.8 | 5.70 | 4.94 | 4.9 | 0.003 | 0.49 | 1.0 | 0.04 | 5.85 | 0.00 | 2.236 | 3.96 | 0.82 | 10.8 | 89.2 | 0.0 | -4.46 | 0.88 | 0.77 | — | 4.8 | 0.005 | 0.73 | 0.0 | 0.04 | 9.11 | 0.00 | 2.067 | 17.51 | 0.00 | 4.9 | 95.1 | 0.0 | -1.18 | 0.91 | 0.89 | 0.82 | — | 29811 | 3783 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EZo | 4162 | 2022-12-14 | 2017-11-16 | 4.1 | 4.20 | 4.05 | 4.2 | 0.008 | 1.36 | 4.0 | 0.09 | 10.29 | 0.01 | 1.569 | 8.95 | 3.41 | 18.5 | 80.8 | 0.8 | -5.42 | 0.78 | 0.79 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.05 | 9.35 | 0.00 | 2.072 | 5.99 | 0.00 | 16.8 | 83.1 | 0.1 | -3.15 | 0.46 | 0.77 | 0.77 | — | 18758 | 3367 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7R9M | 24329 | 2022-12-11 | 2021-06-29 | 4.0 | 4.58 | — | 3.9 | 0.002 | 0.38 | 0.0 | 0.04 | 4.68 | 0.00 | 2.214 | 3.88 | 0.00 | 8.3 | 90.9 | 0.8 | -4.83 | 0.85 | 0.77 | — | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 9.36 | 0.00 | 2.104 | 9.58 | 0.00 | 3.4 | 96.6 | 0.0 | -0.01 | 1.74 | 0.86 | 0.79 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 6Y50 | 10688 | 2022-12-13 | 2020-02-24 | 4.1 | 4.22 | — | 4.0 | 0.003 | 0.52 | 0.0 | 0.04 | 6.93 | 0.00 | 0.761 | 13.95 | 0.00 | 5.9 | 93.9 | 0.2 | -3.48 | 0.68 | 0.68 | — | 4.0 | 0.004 | 0.67 | 0.0 | 0.05 | 9.46 | 0.00 | 2.009 | 8.78 | 0.00 | 13.0 | 86.9 | 0.1 | -1.68 | 0.55 | 0.72 | 0.73 | — | 14916 | 2537 | 10 | 50 | 3 | 0 | 0 | logfile |
✔ | 7Fii | 31598 | 2022-12-12 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | 4.1 | 0.003 | 0.57 | 0.0 | 0.04 | 9.50 | 0.00 | 2.272 | 5.61 | 0.00 | 3.6 | 96.4 | 0.0 | 1.07 | 0.67 | 0.66 | 0.75 | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X34 | 22017 | 2022-12-17 | 2020-05-21 | 4.7 | 6.14 | 4.99 | 4.8 | 0.001 | 0.41 | 0.0 | 0.03 | 9.38 | 0.00 | 2.258 | 3.87 | 0.61 | 1.6 | 98.4 | 0.0 | -2.99 | 0.74 | 0.66 | — | 4.8 | 0.002 | 0.67 | 0.0 | 0.04 | 9.61 | 0.00 | 2.134 | 10.72 | 0.02 | 3.5 | 96.5 | 0.0 | 0.44 | 0.94 | 0.80 | 0.80 | — | 97888 | 13956 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 7ABH | 11696 | 2022-12-14 | 2020-09-07 | 4.5 | 4.60 | — | 4.4 | 0.003 | 0.63 | 0.0 | 0.05 | 9.27 | 0.00 | 1.529 | 2.09 | 0.00 | 6.0 | 93.7 | 0.2 | -2.78 | 0.75 | 0.77 | — | 4.4 | 0.003 | 0.65 | 0.0 | 0.04 | 9.64 | 0.00 | 2.159 | 3.35 | 0.00 | 8.4 | 91.6 | 0.0 | -0.50 | 1.30 | 0.77 | 0.80 | — | 17922 | 3288 | 16 | 65 | 0 | 0 | 0 | logfile |