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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6EZo | 4162 | 2022-04-06 | 2017-11-16 | 4.1 | 4.20 | 4.05 | 4.2 | 0.008 | 1.36 | 4.0 | 0.09 | 10.29 | 0.01 | 1.569 | 8.78 | 3.41 | 18.5 | 80.8 | 0.8 | -5.42 | 0.78 | 0.79 | — | 4.1 | 0.007 | 0.93 | 1.0 | 0.05 | 9.19 | 0.00 | 2.136 | 4.32 | 0.00 | 13.3 | 86.7 | 0.1 | -2.74 | 0.46 | 0.77 | 0.77 | — | 18758 | 3367 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7A96 | 11686 | 2022-04-07 | 2020-09-01 | 4.8 | 5.70 | 4.94 | 4.9 | 0.003 | 0.49 | 1.0 | 0.04 | 5.85 | 0.00 | 2.236 | 3.91 | 0.82 | 10.8 | 89.2 | 0.0 | -4.46 | 0.88 | 0.77 | — | 4.9 | 0.003 | 0.69 | 0.0 | 0.04 | 9.30 | 0.00 | 2.090 | 14.15 | 0.00 | 4.6 | 95.4 | 0.0 | -1.29 | 0.94 | 0.89 | 0.83 | — | 29811 | 3783 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R9M | 24329 | 2022-04-04 | 2021-06-29 | 4.0 | 4.58 | — | 3.9 | 0.002 | 0.38 | 0.0 | 0.04 | 4.68 | 0.00 | 2.214 | 3.88 | 0.00 | 8.3 | 90.9 | 0.8 | -4.83 | 0.85 | 0.77 | — | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 9.36 | 0.00 | 2.104 | 9.45 | 0.00 | 3.4 | 96.6 | 0.0 | -0.01 | 1.74 | 0.86 | 0.79 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 6UVS | 20915 | 2022-04-06 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 9.41 | 0.01 | 1.893 | 1.21 | 0.00 | 10.5 | 89.5 | 0.0 | 1.45 | 0.87 | 0.73 | 0.86 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 6DJP | 7939 | 2022-04-04 | 2018-05-25 | 4.8 | 5.02 | — | 4.8 | 0.011 | 2.00 | 0.0 | 0.08 | 5.34 | 0.01 | 2.368 | 0.45 | 0.00 | 4.6 | 95.4 | 0.0 | -0.74 | 0.76 | 0.65 | — | 4.8 | 0.009 | 1.27 | 0.0 | 0.05 | 9.47 | 0.01 | 2.140 | 24.14 | 0.00 | 24.7 | 74.7 | 0.6 | -4.67 | 1.25 | 0.82 | 0.77 | — | 7307 | 1393 | 8 | 0 | 23 | 0 | 0 | logfile |
✔ | 7ABH | 11696 | 2022-04-06 | 2020-09-07 | 4.5 | 4.60 | — | 4.4 | 0.003 | 0.63 | 0.0 | 0.05 | 9.27 | 0.00 | 1.529 | 2.09 | 0.00 | 6.0 | 93.7 | 0.2 | -2.78 | 0.75 | 0.77 | — | 4.4 | 0.002 | 0.63 | 0.0 | 0.04 | 9.50 | 0.00 | 2.174 | 3.05 | 0.00 | 6.2 | 93.8 | 0.0 | -0.31 | 1.29 | 0.77 | 0.80 | — | 17922 | 3288 | 16 | 65 | 0 | 0 | 0 | logfile |
✔ | 7Fii | 31598 | 2022-04-05 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.52 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | 4.1 | 0.003 | 0.57 | 0.0 | 0.04 | 9.50 | 0.00 | 2.272 | 5.60 | 0.00 | 3.6 | 96.4 | 0.0 | 1.07 | 0.67 | 0.66 | 0.75 | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y50 | 10688 | 2022-04-05 | 2020-02-24 | 4.1 | 4.22 | — | 4.0 | 0.003 | 0.52 | 0.0 | 0.04 | 6.93 | 0.00 | 0.761 | 13.95 | 0.00 | 5.9 | 93.9 | 0.2 | -3.48 | 0.68 | 0.68 | — | 4.0 | 0.004 | 0.67 | 0.0 | 0.05 | 9.54 | 0.00 | 2.003 | 8.73 | 0.00 | 11.0 | 88.9 | 0.1 | -1.71 | 0.52 | 0.71 | 0.73 | — | 14916 | 2537 | 10 | 50 | 3 | 0 | 0 | logfile |
✔ | 6X34 | 22017 | 2022-04-09 | 2020-05-21 | 4.7 | 6.14 | 4.99 | 4.8 | 0.001 | 0.41 | 0.0 | 0.03 | 9.38 | 0.00 | 2.258 | 3.75 | 0.61 | 1.6 | 98.4 | 0.0 | -2.99 | 0.74 | 0.66 | — | 4.8 | 0.003 | 0.65 | 0.0 | 0.04 | 9.64 | 0.00 | 2.095 | 12.58 | 0.00 | 4.0 | 96.0 | 0.0 | 0.40 | 0.92 | 0.80 | 0.80 | — | 97888 | 13956 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2022-04-04 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.61 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.004 | 1.12 | 0.0 | 0.04 | 9.66 | 0.00 | 2.166 | 11.82 | 0.00 | 32.0 | 68.0 | 0.0 | -5.62 | 1.49 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PKW | 20368 | 2022-04-07 | 2019-06-30 | 4.5 | 4.77 | — | 4.4 | 0.007 | 0.94 | 0.0 | 0.05 | 9.19 | 0.01 | 2.239 | 4.06 | 0.00 | 5.8 | 94.2 | 0.0 | -3.48 | 0.66 | 0.78 | — | 4.4 | 0.002 | 0.56 | 0.0 | 0.04 | 9.71 | 0.00 | 2.189 | 6.74 | 0.00 | 4.2 | 95.8 | 0.0 | 2.08 | 1.62 | 0.67 | 0.79 | — | 26262 | 4056 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 7JW0 | 22512 | 2022-04-07 | 2020-08-24 | 4.3 | 4.63 | 4.41 | 4.4 | 0.010 | 1.51 | 6.0 | 0.09 | 8.08 | 0.01 | 2.527 | 0.37 | 0.00 | 2.3 | 97.5 | 0.1 | 1.05 | 0.81 | 0.71 | — | 4.4 | 0.005 | 0.69 | 0.0 | 0.05 | 9.81 | 0.00 | 2.135 | 6.58 | 0.00 | 4.4 | 95.6 | 0.0 | 0.02 | 1.28 | 0.85 | 0.80 | — | 26251 | 4314 | 27 | 0 | 69 | 0 | 0 | logfile |
✔ | 5Y81 | 6816 | 2022-04-08 | 2017-08-18 | 4.7 | 4.77 | — | 4.6 | 0.012 | 1.24 | 3.0 | 0.06 | 11.53 | 0.01 | 1.581 | 41.16 | 14.19 | 15.5 | 79.2 | 5.3 | -5.73 | 0.66 | 0.69 | — | 4.6 | 0.005 | 0.88 | 0.0 | 0.04 | 9.92 | 0.00 | 2.027 | 11.16 | 0.10 | 10.0 | 89.0 | 1.0 | 0.55 | 0.83 | 0.70 | 0.73 | — | 25723 | 4095 | 8 | 0 | 360 | 0 | 0 | logfile |
✔ | 6K9L | 9950 | 2022-04-07 | 2019-06-16 | 4.27 | 4.50 | — | 4.2 | 0.001 | 0.49 | 0.0 | 0.04 | 9.31 | 0.00 | 2.240 | 4.75 | 4.95 | 4.6 | 95.4 | 0.0 | -3.11 | 0.84 | 0.71 | — | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 9.93 | 0.00 | 2.093 | 13.21 | 0.00 | 8.3 | 91.7 | 0.0 | 0.47 | 1.81 | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WBi | 21590 | 2022-04-05 | 2020-03-26 | 4.39 | 4.98 | — | 3.3 | 0.015 | 0.91 | 0.0 | 0.04 | 10.97 | 0.01 | 2.117 | 12.12 | 1.00 | 4.8 | 95.1 | 0.0 | -0.82 | 0.70 | 0.80 | — | 3.3 | 0.002 | 0.61 | 0.0 | 0.04 | 9.93 | 0.00 | 2.197 | 5.87 | 0.00 | 3.2 | 96.8 | 0.0 | 3.29 | 0.52 | 0.72 | 0.84 | — | 13018 | 2284 | 8 | 0 | 1 | 0 | 0 | logfile |
✔ | 6PKV | 20367 | 2022-04-07 | 2019-06-30 | 4.3 | 4.49 | — | 4.3 | 0.005 | 0.86 | 0.0 | 0.05 | 8.98 | 0.01 | 2.311 | 3.43 | 0.00 | 4.7 | 95.3 | 0.0 | -3.45 | 0.67 | 0.78 | — | 4.3 | 0.002 | 0.56 | 0.0 | 0.04 | 9.94 | 0.00 | 2.255 | 6.16 | 0.00 | 4.1 | 95.9 | 0.0 | 1.40 | 1.92 | 0.67 | 0.77 | — | 28284 | 4260 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 6VE2 | 21152 | 2022-04-07 | 2019-12-28 | 4.3 | 4.80 | 4.34 | 4.2 | 0.006 | 1.23 | 0.0 | 0.07 | 5.37 | 0.01 | 2.173 | 16.97 | 0.00 | 4.7 | 94.9 | 0.5 | -0.93 | 0.83 | 0.70 | — | 4.2 | 0.007 | 1.24 | 0.0 | 0.05 | 10.04 | 0.01 | 2.049 | 33.59 | 0.00 | 21.9 | 77.6 | 0.6 | -4.75 | 1.35 | 0.89 | 0.76 | — | 30198 | 6153 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 5V4S | 8633 | 2022-04-05 | 2017-03-10 | 4.2 | 7.95 | — | 4.2 | 0.012 | 1.56 | 20.0 | 0.14 | 8.80 | 0.01 | 2.352 | 3.29 | 0.00 | 6.6 | 93.1 | 0.3 | -1.95 | 0.55 | 0.60 | — | 4.2 | 0.003 | 0.60 | 0.0 | 0.04 | 10.13 | 0.00 | 2.227 | 12.47 | 0.00 | 2.0 | 98.0 | 0.0 | 3.34 | 0.84 | 0.62 | 0.70 | — | 10756 | 1548 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NB7 | 0404 | 2022-04-07 | 2018-12-06 | 4.5 | 4.89 | — | 4.6 | 0.015 | 1.44 | 1.0 | 0.09 | 9.14 | 0.01 | 2.330 | 0.87 | 0.97 | 3.2 | 96.6 | 0.2 | 0.24 | 0.80 | 0.71 | — | 4.6 | 0.006 | 0.79 | 0.0 | 0.05 | 10.14 | 0.00 | 2.095 | 10.33 | 0.00 | 6.0 | 93.9 | 0.1 | -0.32 | 0.82 | 0.83 | 0.79 | — | 24718 | 3828 | 12 | 0 | 137 | 0 | 0 | logfile |
✔ | 6PSN | 20459 | 2022-04-08 | 2019-07-12 | 4.6 | 4.92 | — | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 9.42 | 0.01 | 2.107 | 7.18 | 0.65 | 3.2 | 96.8 | 0.0 | -1.98 | 0.81 | 0.80 | — | 4.6 | 0.002 | 0.59 | 0.0 | 0.04 | 10.28 | 0.00 | 2.102 | 11.01 | 0.00 | 3.5 | 96.5 | 0.0 | -0.20 | 2.25 | 0.81 | 0.77 | — | 32830 | 4154 | 15 | 0 | 14 | 0 | 0 | logfile |