Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NXD	12637	2021-10-04	2021-03-18	4.6	8.22	6.02	6.0	0.013	1.48	0.0	0.11	9.18	0.03	1.831	64.13	1.03	4.0	96.0	0.1	-1.02	0.80	0.45	—	6.0	0.003	0.75	0.0	0.05	10.71	0.00	1.921	26.30	0.00	6.4	93.6	0.0	-1.25	1.64	0.89	0.75	—	12805	1595	18	0	48	0	0	logfile
✔	7LH3	23335	2021-10-03	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.64	0.0	0.04	10.74	0.00	2.275	10.65	0.00	3.6	96.4	0.0	1.66	1.77	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	6Y1A	10669	2021-10-03	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.004	0.70	0.0	0.04	10.74	0.00	2.058	13.24	0.60	7.3	92.7	0.0	-4.93	1.56	0.57	0.75	—	2960	400	32	0	16	0	0	logfile
✔	5WC0	8794	2021-10-03	2017-06-29	4.4	4.61	—	4.4	0.006	1.06	0.0	0.05	8.99	0.01	2.043	5.41	0.11	7.9	91.9	0.2	-4.78	0.87	0.79	—	4.4	0.002	0.58	0.0	0.04	10.76	0.00	2.135	10.08	0.00	5.0	95.0	0.0	0.54	3.08	0.87	0.81	—	11460	1660	12	0	6	0	0	logfile
✔	6oT2	20192	2021-10-06	2019-05-02	4.1	4.25	4.02	4.1	0.009	0.87	0.0	0.05	8.41	0.01	2.066	5.94	0.00	7.3	92.7	0.0	-2.26	0.71	0.76	—	4.1	0.004	0.57	0.0	0.03	10.81	0.00	2.032	8.81	0.00	8.2	91.8	0.0	0.94	1.73	0.71	0.76	—	32311	2444	4	0	56	0	14975	logfile
✔	6DZL	8935	2021-10-04	2018-07-05	4.14	4.55	—	4.2	0.011	0.89	0.0	0.08	8.55	0.01	2.069	6.05	0.23	12.7	87.3	0.0	-4.57	0.78	0.84	—	4.2	0.003	0.65	0.0	0.04	10.81	0.00	2.085	11.02	0.00	7.8	92.2	0.0	-1.27	1.86	0.78	0.86	—	12693	1587	18	0	30	0	0	logfile
✔	6XTB	10618	2021-10-03	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.006	1.33	0.0	0.05	10.83	0.01	2.037	19.23	0.00	34.6	65.4	0.0	-6.29	3.26	0.35	0.66	—	1161	235	1	0	0	0	0	logfile
✔	6N2P	9332	2021-10-04	2018-11-13	4.0	4.78	—	4.2	0.009	0.87	0.0	0.04	7.86	0.01	2.203	7.41	0.00	12.8	87.2	0.0	-4.67	0.58	0.72	—	4.2	0.002	0.59	0.0	0.04	10.84	0.00	2.177	5.15	0.00	7.1	92.9	0.0	0.86	1.41	0.60	0.82	—	14570	880	10	0	0	0	7380	logfile
✔	6CS2	7582	2021-10-05	2018-03-19	4.4	4.80	4.54	4.3	0.006	0.89	0.0	0.05	9.00	0.01	1.972	7.55	0.24	7.0	92.9	0.1	-3.98	0.85	0.82	—	4.3	0.004	0.66	0.0	0.04	10.85	0.00	2.051	15.64	0.00	7.2	92.8	0.0	-1.57	1.27	0.85	0.82	—	27858	3404	7	0	91	0	0	logfile
✔	6QD2	4517	2021-10-05	2018-12-31	4.8	4.92	5.87	4.9	0.006	0.86	0.0	0.04	9.04	0.01	2.025	6.53	0.00	11.6	88.4	0.0	-4.60	0.35	0.62	—	5.0	0.002	0.62	0.0	0.04	10.85	0.00	2.114	9.24	0.00	6.1	93.9	0.0	0.13	1.16	0.36	0.63	—	21746	1420	5	0	2	0	11100	logfile
✔	6AYG	7020	2021-10-03	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	18.15	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.002	0.58	0.0	0.04	10.91	0.00	2.146	4.07	0.00	2.8	97.2	0.0	2.90	0.90	0.83	0.78	—	10456	1756	4	0	0	0	0	logfile
✔	5A6F	3063	2021-10-03	2015-06-25	4.2	5.74	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	8.73	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.8	0.003	0.57	0.0	0.04	10.93	0.00	1.877	12.09	0.00	6.8	93.2	0.0	-0.89	1.04	0.57	0.76	—	8881	540	2	0	43	0	4330	logfile
✔	6G9o	4367	2021-10-06	2018-04-11	4.25	4.47	—	4.2	0.007	0.84	0.0	0.05	8.43	0.01	2.233	1.35	0.00	4.0	96.0	0.0	-2.09	0.74	0.81	—	4.3	0.003	0.60	0.0	0.04	10.94	0.00	2.170	11.01	0.00	3.7	96.3	0.0	-0.08	1.35	0.75	0.83	—	35532	4308	6	0	0	0	0	logfile
✔	7DCC	30635	2021-10-06	2020-10-24	4.3	4.77	—	4.1	0.002	0.48	0.0	0.04	7.38	0.00	2.279	3.13	1.39	2.3	97.7	0.0	-4.06	0.73	0.56	—	4.3	0.003	0.69	0.0	0.04	10.94	0.01	2.115	16.48	0.00	4.9	95.1	0.0	-1.95	2.82	0.77	0.67	—	35019	4485	9	0	0	0	0	logfile
✔	6ZDG	11173	2021-10-05	2020-06-14	4.7	4.97	—	4.8	0.003	0.50	0.0	0.04	8.99	0.00	1.891	6.93	2.41	3.9	96.1	0.0	0.05	0.71	0.68	—	4.8	0.003	0.56	0.0	0.04	10.96	0.00	2.037	13.54	0.00	5.9	94.1	0.0	-0.40	1.36	0.71	0.68	—	28548	1884	12	0	3	0	13995	logfile
✔	6CE9	7462	2021-10-03	2018-02-11	4.3	4.83	—	4.4	0.007	1.01	0.0	0.06	9.85	0.01	2.314	7.35	0.00	12.6	87.1	0.3	-3.39	0.86	0.83	—	4.3	0.003	0.70	0.0	0.05	10.97	0.00	2.278	11.68	0.00	8.7	91.3	0.0	-1.99	1.41	0.87	0.83	—	10782	1286	10	0	30	0	0	logfile
✔	6DiD	7896	2021-10-07	2018-05-23	4.71	5.51	—	4.7	0.014	1.57	0.0	0.10	11.27	0.01	0.718	11.24	1.83	2.4	97.6	0.0	1.29	0.72	0.51	—	4.8	0.003	0.58	0.0	0.04	10.98	0.00	1.927	46.99	0.46	5.6	94.4	0.0	0.45	1.58	0.81	0.66	—	34674	3009	18	0	147	0	9465	logfile
✔	6DM0	7960	2021-10-06	2018-06-04	4.4	4.97	—	4.8	0.015	1.04	0.0	0.07	10.15	0.01	2.183	4.13	0.30	8.4	91.2	0.4	-3.36	0.85	0.78	—	4.8	0.003	0.72	0.0	0.04	11.00	0.00	2.050	11.48	0.00	6.6	93.1	0.3	-1.54	0.84	0.86	0.80	—	31095	3942	8	0	5	0	0	logfile
✔	6MRD	9196	2021-10-06	2018-10-12	3.82	4.44	—	3.9	0.008	0.88	0.0	0.07	10.50	0.00	1.941	43.42	0.00	9.7	90.1	0.2	-2.91	0.90	0.86	1.24	3.9	0.003	0.63	0.0	0.07	11.01	0.00	1.807	55.72	0.06	8.6	91.4	0.0	0.66	0.56	0.90	0.87	1.08	34517	4396	21	0	14	0	1477	logfile
✔	6QD0	4515	2021-10-05	2018-12-31	4.5	4.65	5.24	4.6	0.009	1.03	0.0	0.05	9.68	0.01	2.001	9.56	0.00	14.2	85.8	0.0	-4.94	0.56	0.71	—	4.6	0.003	0.69	0.0	0.04	11.02	0.01	1.906	15.45	0.00	9.2	90.8	0.0	-1.38	1.82	0.56	0.71	—	21746	1420	5	0	2	0	11100	logfile

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