Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NXD	12637	2022-12-13	2021-03-18	4.6	8.22	6.02	6.0	0.013	1.48	0.0	0.11	9.18	0.03	1.831	64.85	1.03	4.0	96.0	0.1	-1.02	0.80	0.44	—	6.0	0.006	0.96	0.0	0.05	10.95	0.01	1.745	43.53	0.00	7.5	92.5	0.0	-1.63	1.28	0.90	0.75	—	12805	1595	18	0	48	0	0	logfile
✔	6G9o	4367	2022-12-19	2018-04-11	4.25	4.47	—	4.2	0.007	0.84	0.0	0.05	8.43	0.01	2.233	1.42	0.00	4.0	96.0	0.0	-2.09	0.74	0.81	—	4.2	0.002	0.58	0.0	0.04	10.97	0.00	2.219	9.47	0.00	3.7	96.3	0.0	-0.15	1.31	0.74	0.83	—	35532	4308	6	0	0	0	0	logfile
✔	7LF1	23297	2022-12-19	2021-01-15	4.04	4.49	4.10	4.2	0.006	1.07	0.0	0.06	9.39	0.01	1.592	12.30	0.16	12.9	86.7	0.4	-4.16	0.83	0.66	—	4.2	0.003	0.77	0.0	0.05	10.98	0.01	1.435	21.00	0.00	10.8	89.1	0.1	-2.11	1.32	0.86	0.75	—	34518	4548	24	0	12	0	0	logfile
✔	6DiD	7896	2022-12-21	2018-05-23	4.71	5.51	—	4.7	0.014	1.57	0.0	0.10	11.27	0.01	0.718	10.87	1.83	2.4	97.6	0.0	1.29	0.72	0.51	—	4.7	0.004	0.65	0.0	0.04	11.00	0.00	1.770	52.32	0.46	6.6	93.4	0.0	0.17	0.96	0.81	0.67	—	34674	3009	54	0	147	0	9465	logfile
✔	7UPi	26667	2022-12-11	2022-04-15	2.89	3.71	2.90	3.2	0.002	0.55	0.0	0.04	9.09	0.00	1.843	2.62	0.00	1.9	98.1	0.0	-0.12	0.91	0.87	3.97	3.2	0.004	0.58	0.0	0.04	11.05	0.00	1.939	4.35	0.11	2.6	97.4	0.0	-0.29	2.21	0.91	0.90	4.11	7775	972	5	0	5	0	0	logfile
✔	6E9Y	9020	2022-12-11	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.53	0.0	0.03	11.06	0.00	2.036	9.37	0.00	1.4	98.6	0.0	2.12	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	7T8C	25744	2022-12-16	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.65	0.0	0.04	11.10	0.00	2.150	9.83	0.00	4.6	95.4	0.0	0.29	1.07	0.65	0.60	—	28952	3626	7	0	0	0	0	logfile
✔	3JBR	6475	2022-12-13	2015-09-29	4.2	4.39	—	4.2	0.008	1.30	0.0	0.06	8.64	0.00	1.419	19.29	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.005	0.80	0.0	0.04	11.10	0.00	2.075	17.72	0.00	12.5	85.4	2.1	-0.94	1.53	0.66	0.71	—	16467	2148	6	0	385	0	0	logfile
✔	6CE9	7462	2022-12-12	2018-02-11	4.3	4.83	—	4.4	0.007	1.01	0.0	0.06	9.85	0.01	2.314	7.35	0.00	12.6	87.1	0.3	-3.39	0.86	0.83	—	4.3	0.003	0.72	0.0	0.05	11.10	0.00	2.256	13.00	0.00	9.5	90.5	0.0	-2.13	1.38	0.87	0.83	—	10782	1286	20	0	30	0	0	logfile
✔	7MVV	24057	2022-12-15	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.003	0.52	0.0	0.03	11.12	0.00	2.027	7.30	0.07	3.4	96.6	0.0	2.79	0.96	0.90	0.83	1.13	25764	1609	4	0	0	0	12907	logfile
✔	6XGC	22180	2022-12-13	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.92	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.66	0.0	0.04	11.15	0.00	2.216	11.51	0.11	3.4	96.6	0.0	0.23	1.32	0.81	0.82	—	17040	2157	21	0	21	0	0	logfile
✔	6CEB	7463	2022-12-12	2018-02-11	4.7	5.92	—	4.7	0.006	0.97	0.0	0.06	9.53	0.01	1.288	8.85	0.00	11.8	88.0	0.2	-3.39	0.88	0.82	—	4.7	0.007	0.94	0.0	0.05	11.16	0.01	2.077	32.44	0.00	13.9	86.1	0.0	-2.63	1.75	0.89	0.85	—	11722	1406	20	0	30	0	0	logfile
✔	5VoT	8721	2022-12-13	2017-05-03	4.9	4.98	—	4.9	0.004	0.67	0.0	0.04	7.57	0.00	2.126	11.91	0.00	8.5	91.5	0.0	-4.03	0.63	0.71	—	4.9	0.003	0.70	0.0	0.04	11.17	0.00	2.163	12.61	0.00	5.6	94.4	0.0	0.29	0.86	0.65	0.80	—	16463	2322	8	0	0	0	0	logfile
✔	6NB6	0403	2022-12-15	2018-12-06	4.2	4.51	—	4.3	0.016	1.44	4.0	0.10	9.81	0.01	2.264	1.21	0.42	3.3	96.4	0.2	0.22	0.81	0.76	—	4.3	0.003	0.68	0.0	0.05	11.18	0.00	2.122	6.05	0.00	4.0	96.0	0.0	0.36	0.70	0.83	0.80	—	25783	3599	48	0	149	0	0	logfile
✔	6HJQ	0236	2022-12-14	2018-09-04	4.1	4.38	4.03	4.1	0.005	0.91	0.0	0.06	10.01	0.01	1.406	5.06	0.13	5.6	94.3	0.1	-3.06	0.83	0.87	—	4.1	0.004	0.64	0.0	0.04	11.22	0.00	1.971	9.97	0.00	5.7	94.3	0.0	-0.31	1.65	0.83	0.87	—	22530	2871	27	0	42	0	0	logfile
✔	7WVQ	32857	2022-12-16	2022-02-10	4.04	4.06	—	4.0	0.007	1.05	6.0	0.07	9.79	0.01	2.339	3.77	0.46	5.2	94.6	0.2	-3.46	0.66	0.50	—	2.6	0.003	0.70	0.0	0.04	11.24	0.00	2.040	15.93	0.06	3.8	96.2	0.1	-1.08	0.99	0.71	0.61	—	29527	3741	4	0	0	0	0	logfile
✔	7SB5	24970	2022-12-16	2021-09-23	4.2	4.53	4.05	4.2	0.021	1.76	8.0	0.11	9.95	0.01	2.138	2.15	0.00	2.2	97.8	0.0	0.57	0.86	0.85	—	4.2	0.004	0.61	0.0	0.04	11.24	0.00	2.140	8.20	0.00	3.5	96.5	0.0	0.37	1.19	0.86	0.87	—	29457	3550	19	0	263	0	0	logfile
✔	7EoQ	31227	2022-12-15	2021-04-22	4.1	4.43	—	4.1	0.002	0.46	0.0	0.04	9.71	0.00	2.195	7.83	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.004	0.66	0.0	0.04	11.25	0.00	2.124	17.22	0.00	7.9	92.1	0.0	-0.78	1.25	0.89	0.80	—	24742	3144	8	0	10	0	0	logfile
✔	5U0P	8479	2022-12-14	2016-11-26	4.4	4.99	—	4.2	0.007	1.18	1.0	0.05	8.61	0.01	1.541	18.54	0.00	8.3	88.2	3.4	-2.22	0.75	0.62	—	4.2	0.003	0.74	0.0	0.04	11.25	0.00	2.194	18.38	0.00	8.7	90.7	0.6	-0.17	1.63	0.82	0.78	—	20268	2557	16	0	372	0	0	logfile
✔	6Y1A	10669	2022-12-11	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.005	0.76	0.0	0.04	11.27	0.00	2.048	15.89	0.00	9.8	90.2	0.0	-4.83	1.55	0.57	0.76	—	2960	400	32	0	16	0	0	logfile

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