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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NXD | 12637 | 2022-12-13 | 2021-03-18 | 4.6 | 8.22 | 6.02 | 6.0 | 0.013 | 1.48 | 0.0 | 0.11 | 9.18 | 0.03 | 1.831 | 64.85 | 1.03 | 4.0 | 96.0 | 0.1 | -1.02 | 0.80 | 0.44 | — | 6.0 | 0.006 | 0.96 | 0.0 | 0.05 | 10.95 | 0.01 | 1.745 | 43.53 | 0.00 | 7.5 | 92.5 | 0.0 | -1.63 | 1.28 | 0.90 | 0.75 | — | 12805 | 1595 | 18 | 0 | 48 | 0 | 0 | logfile |
✔ | 6G9o | 4367 | 2022-12-19 | 2018-04-11 | 4.25 | 4.47 | — | 4.2 | 0.007 | 0.84 | 0.0 | 0.05 | 8.43 | 0.01 | 2.233 | 1.42 | 0.00 | 4.0 | 96.0 | 0.0 | -2.09 | 0.74 | 0.81 | — | 4.2 | 0.002 | 0.58 | 0.0 | 0.04 | 10.97 | 0.00 | 2.219 | 9.47 | 0.00 | 3.7 | 96.3 | 0.0 | -0.15 | 1.31 | 0.74 | 0.83 | — | 35532 | 4308 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LF1 | 23297 | 2022-12-19 | 2021-01-15 | 4.04 | 4.49 | 4.10 | 4.2 | 0.006 | 1.07 | 0.0 | 0.06 | 9.39 | 0.01 | 1.592 | 12.30 | 0.16 | 12.9 | 86.7 | 0.4 | -4.16 | 0.83 | 0.66 | — | 4.2 | 0.003 | 0.77 | 0.0 | 0.05 | 10.98 | 0.01 | 1.435 | 21.00 | 0.00 | 10.8 | 89.1 | 0.1 | -2.11 | 1.32 | 0.86 | 0.75 | — | 34518 | 4548 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 6DiD | 7896 | 2022-12-21 | 2018-05-23 | 4.71 | 5.51 | — | 4.7 | 0.014 | 1.57 | 0.0 | 0.10 | 11.27 | 0.01 | 0.718 | 10.87 | 1.83 | 2.4 | 97.6 | 0.0 | 1.29 | 0.72 | 0.51 | — | 4.7 | 0.004 | 0.65 | 0.0 | 0.04 | 11.00 | 0.00 | 1.770 | 52.32 | 0.46 | 6.6 | 93.4 | 0.0 | 0.17 | 0.96 | 0.81 | 0.67 | — | 34674 | 3009 | 54 | 0 | 147 | 0 | 9465 | logfile |
✔ | 7UPi | 26667 | 2022-12-11 | 2022-04-15 | 2.89 | 3.71 | 2.90 | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 9.09 | 0.00 | 1.843 | 2.62 | 0.00 | 1.9 | 98.1 | 0.0 | -0.12 | 0.91 | 0.87 | 3.97 | 3.2 | 0.004 | 0.58 | 0.0 | 0.04 | 11.05 | 0.00 | 1.939 | 4.35 | 0.11 | 2.6 | 97.4 | 0.0 | -0.29 | 2.21 | 0.91 | 0.90 | 4.11 | 7775 | 972 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 6E9Y | 9020 | 2022-12-11 | 2018-08-01 | 4.3 | 4.50 | — | 4.3 | 0.008 | 0.73 | 0.0 | 0.04 | 7.51 | 0.00 | 1.433 | 25.35 | 0.00 | 3.1 | 96.9 | 0.0 | -3.58 | 0.75 | 0.80 | — | 4.3 | 0.003 | 0.53 | 0.0 | 0.03 | 11.06 | 0.00 | 2.036 | 9.37 | 0.00 | 1.4 | 98.6 | 0.0 | 2.12 | 1.50 | 0.76 | 0.82 | — | 54450 | 3405 | 15 | 0 | 0 | 0 | 28155 | logfile |
✔ | 7T8C | 25744 | 2022-12-16 | 2021-12-16 | 4.5 | 3.21 | 4.51 | 4.6 | 0.001 | 0.42 | 0.0 | 0.04 | 7.59 | 0.00 | 2.347 | 5.08 | 0.41 | 3.6 | 96.4 | 0.0 | 0.76 | 0.63 | 0.54 | — | 4.2 | 0.002 | 0.65 | 0.0 | 0.04 | 11.10 | 0.00 | 2.150 | 9.83 | 0.00 | 4.6 | 95.4 | 0.0 | 0.29 | 1.07 | 0.65 | 0.60 | — | 28952 | 3626 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBR | 6475 | 2022-12-13 | 2015-09-29 | 4.2 | 4.39 | — | 4.2 | 0.008 | 1.30 | 0.0 | 0.06 | 8.64 | 0.00 | 1.419 | 19.29 | 0.37 | 8.1 | 84.8 | 7.0 | -3.43 | 0.66 | 0.70 | — | 4.2 | 0.005 | 0.80 | 0.0 | 0.04 | 11.10 | 0.00 | 2.075 | 17.72 | 0.00 | 12.5 | 85.4 | 2.1 | -0.94 | 1.53 | 0.66 | 0.71 | — | 16467 | 2148 | 6 | 0 | 385 | 0 | 0 | logfile |
✔ | 6CE9 | 7462 | 2022-12-12 | 2018-02-11 | 4.3 | 4.83 | — | 4.4 | 0.007 | 1.01 | 0.0 | 0.06 | 9.85 | 0.01 | 2.314 | 7.35 | 0.00 | 12.6 | 87.1 | 0.3 | -3.39 | 0.86 | 0.83 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.05 | 11.10 | 0.00 | 2.256 | 13.00 | 0.00 | 9.5 | 90.5 | 0.0 | -2.13 | 1.38 | 0.87 | 0.83 | — | 10782 | 1286 | 20 | 0 | 30 | 0 | 0 | logfile |
✔ | 7MVV | 24057 | 2022-12-15 | 2021-05-15 | 3.22 | 4.20 | 3.24 | 3.5 | 0.002 | 0.36 | 0.0 | 0.03 | 6.43 | 0.00 | 2.161 | 3.07 | 0.07 | 1.3 | 98.7 | 0.0 | -0.66 | 0.88 | 0.76 | 0.50 | 3.6 | 0.003 | 0.52 | 0.0 | 0.03 | 11.12 | 0.00 | 2.027 | 7.30 | 0.07 | 3.4 | 96.6 | 0.0 | 2.79 | 0.96 | 0.90 | 0.83 | 1.13 | 25764 | 1609 | 4 | 0 | 0 | 0 | 12907 | logfile |
✔ | 6XGC | 22180 | 2022-12-13 | 2020-06-17 | 4.1 | 4.25 | — | 4.2 | 0.001 | 0.39 | 0.0 | 0.04 | 7.78 | 0.00 | 2.215 | 5.92 | 0.16 | 2.3 | 97.7 | 0.0 | 1.43 | 0.80 | 0.81 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 11.15 | 0.00 | 2.216 | 11.51 | 0.11 | 3.4 | 96.6 | 0.0 | 0.23 | 1.32 | 0.81 | 0.82 | — | 17040 | 2157 | 21 | 0 | 21 | 0 | 0 | logfile |
✔ | 6CEB | 7463 | 2022-12-12 | 2018-02-11 | 4.7 | 5.92 | — | 4.7 | 0.006 | 0.97 | 0.0 | 0.06 | 9.53 | 0.01 | 1.288 | 8.85 | 0.00 | 11.8 | 88.0 | 0.2 | -3.39 | 0.88 | 0.82 | — | 4.7 | 0.007 | 0.94 | 0.0 | 0.05 | 11.16 | 0.01 | 2.077 | 32.44 | 0.00 | 13.9 | 86.1 | 0.0 | -2.63 | 1.75 | 0.89 | 0.85 | — | 11722 | 1406 | 20 | 0 | 30 | 0 | 0 | logfile |
✔ | 5VoT | 8721 | 2022-12-13 | 2017-05-03 | 4.9 | 4.98 | — | 4.9 | 0.004 | 0.67 | 0.0 | 0.04 | 7.57 | 0.00 | 2.126 | 11.91 | 0.00 | 8.5 | 91.5 | 0.0 | -4.03 | 0.63 | 0.71 | — | 4.9 | 0.003 | 0.70 | 0.0 | 0.04 | 11.17 | 0.00 | 2.163 | 12.61 | 0.00 | 5.6 | 94.4 | 0.0 | 0.29 | 0.86 | 0.65 | 0.80 | — | 16463 | 2322 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NB6 | 0403 | 2022-12-15 | 2018-12-06 | 4.2 | 4.51 | — | 4.3 | 0.016 | 1.44 | 4.0 | 0.10 | 9.81 | 0.01 | 2.264 | 1.21 | 0.42 | 3.3 | 96.4 | 0.2 | 0.22 | 0.81 | 0.76 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.05 | 11.18 | 0.00 | 2.122 | 6.05 | 0.00 | 4.0 | 96.0 | 0.0 | 0.36 | 0.70 | 0.83 | 0.80 | — | 25783 | 3599 | 48 | 0 | 149 | 0 | 0 | logfile |
✔ | 6HJQ | 0236 | 2022-12-14 | 2018-09-04 | 4.1 | 4.38 | 4.03 | 4.1 | 0.005 | 0.91 | 0.0 | 0.06 | 10.01 | 0.01 | 1.406 | 5.06 | 0.13 | 5.6 | 94.3 | 0.1 | -3.06 | 0.83 | 0.87 | — | 4.1 | 0.004 | 0.64 | 0.0 | 0.04 | 11.22 | 0.00 | 1.971 | 9.97 | 0.00 | 5.7 | 94.3 | 0.0 | -0.31 | 1.65 | 0.83 | 0.87 | — | 22530 | 2871 | 27 | 0 | 42 | 0 | 0 | logfile |
✔ | 7WVQ | 32857 | 2022-12-16 | 2022-02-10 | 4.04 | 4.06 | — | 4.0 | 0.007 | 1.05 | 6.0 | 0.07 | 9.79 | 0.01 | 2.339 | 3.77 | 0.46 | 5.2 | 94.6 | 0.2 | -3.46 | 0.66 | 0.50 | — | 2.6 | 0.003 | 0.70 | 0.0 | 0.04 | 11.24 | 0.00 | 2.040 | 15.93 | 0.06 | 3.8 | 96.2 | 0.1 | -1.08 | 0.99 | 0.71 | 0.61 | — | 29527 | 3741 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SB5 | 24970 | 2022-12-16 | 2021-09-23 | 4.2 | 4.53 | 4.05 | 4.2 | 0.021 | 1.76 | 8.0 | 0.11 | 9.95 | 0.01 | 2.138 | 2.15 | 0.00 | 2.2 | 97.8 | 0.0 | 0.57 | 0.86 | 0.85 | — | 4.2 | 0.004 | 0.61 | 0.0 | 0.04 | 11.24 | 0.00 | 2.140 | 8.20 | 0.00 | 3.5 | 96.5 | 0.0 | 0.37 | 1.19 | 0.86 | 0.87 | — | 29457 | 3550 | 19 | 0 | 263 | 0 | 0 | logfile |
✔ | 7EoQ | 31227 | 2022-12-15 | 2021-04-22 | 4.1 | 4.43 | — | 4.1 | 0.002 | 0.46 | 0.0 | 0.04 | 9.71 | 0.00 | 2.195 | 7.83 | 2.14 | 4.7 | 95.3 | 0.0 | 0.09 | 0.86 | 0.74 | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.04 | 11.25 | 0.00 | 2.124 | 17.22 | 0.00 | 7.9 | 92.1 | 0.0 | -0.78 | 1.25 | 0.89 | 0.80 | — | 24742 | 3144 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 5U0P | 8479 | 2022-12-14 | 2016-11-26 | 4.4 | 4.99 | — | 4.2 | 0.007 | 1.18 | 1.0 | 0.05 | 8.61 | 0.01 | 1.541 | 18.54 | 0.00 | 8.3 | 88.2 | 3.4 | -2.22 | 0.75 | 0.62 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 11.25 | 0.00 | 2.194 | 18.38 | 0.00 | 8.7 | 90.7 | 0.6 | -0.17 | 1.63 | 0.82 | 0.78 | — | 20268 | 2557 | 16 | 0 | 372 | 0 | 0 | logfile |
✔ | 6Y1A | 10669 | 2022-12-11 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.005 | 1.09 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.005 | 0.76 | 0.0 | 0.04 | 11.27 | 0.00 | 2.048 | 15.89 | 0.00 | 9.8 | 90.2 | 0.0 | -4.83 | 1.55 | 0.57 | 0.76 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |