Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K8Y	22735	2023-04-28	2020-09-27	4.4	5.34	—	4.4	0.003	0.55	0.0	0.05	10.63	0.00	1.137	21.70	0.04	2.8	97.0	0.3	-2.11	0.80	0.77	—	4.4	0.002	0.60	0.0	0.04	11.27	0.00	2.109	12.37	0.00	3.6	96.2	0.1	-0.32	1.11	0.81	0.81	—	25560	3242	8	0	23	0	0	logfile
✔	7EoU	31231	2023-04-27	2021-04-22	4.3	4.50	—	4.2	0.002	0.45	0.0	0.04	8.94	0.00	2.243	9.16	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.003	0.63	0.0	0.04	11.29	0.00	2.097	17.59	0.00	6.7	93.2	0.1	-0.41	1.64	0.89	0.80	—	24593	3084	8	0	19	0	0	logfile
✔	8APL	15574	2023-04-26	2022-08-10	4.1	3.88	4.12	3.8	0.002	0.48	0.0	0.04	9.13	0.00	2.213	10.27	1.93	3.1	96.9	0.0	0.14	0.76	0.73	—	3.7	0.004	0.67	0.0	0.04	11.31	0.00	2.098	19.65	0.12	4.8	95.2	0.0	-0.62	0.93	0.77	0.74	—	21888	2694	6	0	0	0	0	logfile
✔	7D9T	30620	2023-04-20	2020-10-14	4.1	4.18	—	3.9	0.003	0.57	0.0	0.04	10.99	0.00	2.230	6.74	0.00	3.9	96.1	0.0	-1.91	0.84	0.81	—	3.9	0.002	0.61	0.0	0.04	11.33	0.00	2.136	8.09	0.00	2.8	97.1	0.1	0.88	0.47	0.85	0.82	—	7451	1079	2	0	1	0	0	logfile
✔	7Y7K	33668	2023-04-19	2022-06-22	4.4	4.96	5.46	4.3	0.010	1.63	0.0	0.07	13.11	0.01	2.215	33.93	3.90	10.3	86.1	3.6	-2.50	0.71	0.63	—	4.3	0.003	0.73	0.0	0.04	11.34	0.00	2.127	13.54	0.35	6.0	93.8	0.2	-1.28	1.66	0.73	0.67	—	2942	422	3	0	0	0	0	logfile
✔	6NB6	0403	2023-04-27	2018-12-06	4.2	4.51	—	4.3	0.017	1.50	4.0	0.11	9.85	0.01	2.264	1.21	0.42	3.3	96.4	0.2	0.22	0.81	0.76	—	4.3	0.003	0.68	0.0	0.04	11.35	0.00	2.131	5.54	0.00	3.6	96.4	0.0	0.77	1.52	0.83	0.80	—	25783	3599	48	0	149	0	0	logfile
✔	5WEK	8819	2023-04-28	2017-07-10	4.6	4.81	—	4.6	0.006	0.93	0.0	0.05	9.25	0.01	2.248	6.20	0.27	4.8	94.9	0.2	-4.07	0.74	0.76	—	4.6	0.003	0.69	0.0	0.04	11.36	0.00	2.140	16.44	0.00	5.7	94.2	0.1	-0.80	1.47	0.77	0.80	—	27468	3484	8	0	4	0	0	logfile
✔	6Q2R	20578	2023-04-29	2019-08-08	4.3	4.92	—	4.6	0.004	0.82	0.0	0.05	8.43	0.01	1.384	4.86	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	4.6	0.004	0.74	0.0	0.04	11.38	0.01	2.060	19.20	0.03	7.2	92.8	0.0	-1.75	2.63	0.75	0.73	—	30392	3800	16	0	40	0	0	logfile
✔	6ZGG	11205	2023-04-27	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.005	0.73	0.0	0.04	11.39	0.00	2.111	11.42	0.36	5.9	94.0	0.0	-0.97	1.78	0.87	0.83	1.19	25096	3207	3	0	0	0	0	logfile
✔	6QVU	4657	2023-04-21	2019-03-05	4.2	6.05	4.20	6.9	0.006	1.31	0.0	0.06	12.34	0.01	2.191	10.73	1.99	9.3	90.7	0.0	-4.21	0.65	0.75	—	6.9	0.003	0.87	0.0	0.05	11.40	0.01	2.192	18.11	0.00	7.0	93.0	0.0	-0.59	1.38	0.66	0.76	—	9272	1198	2	0	0	0	0	logfile
✔	7WVQ	32857	2023-04-29	2022-02-10	4.04	4.06	—	4.0	0.007	1.05	6.0	0.07	9.79	0.01	2.339	3.72	0.46	5.2	94.6	0.2	-3.46	0.66	0.50	—	2.6	0.003	0.74	0.0	0.05	11.40	0.01	2.061	14.61	0.03	3.9	96.1	0.1	-1.44	1.11	0.72	0.61	—	29527	3741	4	0	0	0	0	logfile
✔	8HGP	34745	2023-04-21	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	8.02	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.79	0.0	0.05	11.42	0.01	2.084	16.69	0.10	10.2	89.8	0.0	-2.46	1.01	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✔	7LRC	23494	2023-04-20	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	7.94	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.60	0.0	0.04	11.45	0.00	2.007	9.75	0.90	0.8	99.2	0.0	3.50	0.56	0.76	0.86	3.04	6202	762	6	0	6	0	0	logfile
✔	6CE9	7462	2023-04-21	2018-02-11	4.3	4.83	—	4.4	0.008	1.06	0.0	0.06	10.01	0.01	2.314	7.35	0.00	12.6	87.1	0.3	-3.39	0.86	0.83	—	4.3	0.003	0.73	0.0	0.05	11.45	0.00	2.257	12.57	0.00	8.9	91.1	0.0	-2.20	1.37	0.87	0.83	—	10782	1286	20	0	30	0	0	logfile
✔	6ZFo	11184	2023-04-24	2020-06-17	4.4	4.43	—	4.4	0.003	0.56	0.0	0.04	10.41	0.00	2.157	3.58	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	4.4	0.003	0.60	0.0	0.04	11.46	0.00	1.946	11.31	0.00	5.3	94.7	0.0	-1.00	1.56	0.53	0.59	—	18988	1252	8	0	2	0	9310	logfile
✔	5Z1F	6875	2023-04-20	2017-12-26	4.8	4.85	4.58	4.8	0.006	0.87	0.0	0.05	13.13	0.01	2.213	25.36	5.04	9.8	89.2	1.0	-4.90	0.60	0.76	—	4.8	0.003	0.77	0.0	0.04	11.46	0.01	2.252	13.30	0.00	6.1	93.9	0.0	0.30	1.40	0.59	0.76	—	8480	1202	2	0	0	0	0	logfile
✔	6MET	9109	2023-04-21	2018-09-07	4.5	4.68	4.22	4.4	0.007	1.08	0.0	0.07	9.95	0.01	1.985	12.02	1.37	8.0	91.5	0.5	-4.19	0.58	0.54	—	4.4	0.004	0.79	0.0	0.05	11.48	0.00	2.084	16.24	0.00	8.2	91.7	0.1	-1.65	1.20	0.69	0.80	—	8911	1074	14	0	32	0	0	logfile
✔	6X35	22018	2023-04-21	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	6TNi	10534	2023-04-22	2019-12-08	3.4	3.66	3.27	3.5	0.007	1.17	5.0	0.07	13.10	0.01	2.140	6.63	15.63	15.2	84.3	0.5	-5.14	0.72	0.68	3.22	3.5	0.002	0.70	0.0	0.04	11.50	0.00	2.234	6.20	0.59	11.9	88.0	0.1	-0.58	1.57	0.71	0.68	1.66	11625	2134	2	0	0	0	0	logfile
✔	6HJQ	0236	2023-04-26	2018-09-04	4.1	4.38	4.03	4.1	0.006	0.94	0.0	0.06	10.07	0.01	1.406	4.81	0.13	5.6	94.3	0.1	-3.06	0.83	0.87	—	4.1	0.003	0.68	0.0	0.04	11.52	0.00	2.000	9.92	0.00	5.4	94.6	0.0	-0.55	1.66	0.83	0.87	—	22530	2871	27	0	42	0	0	logfile

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