Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FU8	4319	2022-07-02	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	7N8N	24238	2022-07-03	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	28.11	0.01	2.035	27.71	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.005	0.76	0.0	0.04	28.92	0.01	2.088	26.08	0.93	8.1	91.6	0.3	-0.94	0.74	0.88	0.81	-0.33	11121	798	6	250	0	0	0	logfile
✔	7M2Z	23638	2022-07-04	2021-03-17	3.7	5.69	4.14	4.3	0.007	0.90	0.0	0.05	14.28	0.01	2.006	17.65	0.00	7.7	92.2	0.0	-1.39	0.84	0.67	0.31	4.5	0.004	0.89	0.0	0.05	15.91	0.00	2.088	20.26	0.63	5.1	94.9	0.0	-0.15	0.86	0.89	0.85	-0.27	18330	2253	6	2	0	0	0	logfile
✔	7o3Y	12712	2022-07-11	2021-04-03	3.8	5.36	4.02	6.6	0.017	1.23	0.0	0.07	17.45	0.01	1.232	13.83	1.39	2.3	97.7	0.0	2.03	0.56	0.43	-1.05	6.8	0.013	1.37	7.0	0.06	19.49	0.01	1.502	56.31	1.27	1.6	98.3	0.0	2.15	2.03	0.77	0.84	-0.25	158288	20576	112	0	16	0	0	logfile
✔	6QYM	4679	2022-07-05	2019-03-09	3.6	3.25	—	4.0	0.007	0.89	0.0	0.05	9.66	0.01	2.201	9.00	0.00	6.5	93.5	0.0	-4.63	0.62	0.60	0.02	3.5	0.006	1.00	0.0	0.05	17.55	0.01	2.058	32.70	1.38	5.9	94.1	0.0	-1.09	1.93	0.69	0.68	-0.22	26880	3360	12	0	0	0	0	logfile
✔	6C9K	7437	2022-07-07	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	1.65	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.004	0.62	0.0	0.04	14.84	0.00	2.148	18.74	0.15	2.1	97.9	0.0	3.14	0.89	0.81	0.67	-0.17	37632	4923	24	0	0	0	0	logfile
✔	6CXC	7774	2022-07-04	2018-04-02	3.9	4.14	—	4.0	0.006	1.02	0.0	0.06	10.95	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.004	0.82	0.0	0.05	16.06	0.01	2.124	22.38	0.57	6.5	93.5	0.0	-2.33	2.15	0.73	0.77	-0.17	15196	1945	18	0	6	0	0	logfile
✔	7R4R	14315	2022-07-08	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.31	17.82	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.7	0.006	1.43	17.0	0.24	16.68	0.01	1.806	37.66	1.60	10.6	89.3	0.1	-2.66	1.29	0.68	0.61	-0.13	50505	3293	12	0	43	0	24171	logfile
✔	7NCi	12267	2022-07-03	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	4.0	0.003	0.59	2.0	0.05	14.74	0.00	1.986	16.42	0.37	11.1	88.9	0.0	-4.08	1.11	0.64	0.57	-0.11	11292	816	12	0	0	0	5796	logfile
✔	6TUP	10593	2022-07-05	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.6	0.039	2.56	0.0	0.24	27.07	0.01	1.098	116.88	1.25	3.2	96.8	0.0	-2.76	8.49	0.55	0.60	-0.09	22400	2300	100	300	0	0	0	logfile
✔	6F1Z	4172	2022-07-02	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	12.14	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.4	0.004	1.01	0.0	0.05	16.44	0.01	2.105	24.74	0.81	7.8	92.2	0.0	-1.37	1.33	0.66	0.75	-0.09	2138	265	4	0	0	0	0	logfile
✔	6iP1	9697	2022-07-03	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	8.09	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.95	0.0	0.04	18.38	0.00	2.200	16.40	1.02	7.3	92.7	0.0	-0.36	1.25	0.60	0.75	-0.05	11245	1420	8	0	0	0	0	logfile
✔	7QG8	13952	2022-07-09	2021-12-07	3.97	7.71	—	4.0	0.016	1.62	61.0	0.11	15.09	0.01	0.770	4.91	1.61	8.6	90.4	1.0	-3.97	0.64	0.40	0.16	4.0	0.005	0.91	2.0	0.04	19.00	0.01	1.527	45.55	0.29	10.6	89.3	0.2	-2.84	4.29	0.83	0.79	-0.02	147108	5936	58	4695	3	9	0	logfile
✔	6oiG	20077	2022-07-05	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.76	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.011	1.00	5.0	0.05	18.58	0.01	1.477	32.38	0.87	12.9	86.9	0.2	-2.68	3.08	0.89	0.85	0.00	129140	6757	48	3522	116	0	0	logfile
✔	5VA1	8650	2022-07-04	2017-03-24	3.7	5.99	—	4.4	0.008	1.02	0.0	0.06	11.84	0.00	1.715	8.32	1.30	4.6	95.4	0.0	-3.52	0.65	0.78	0.25	4.5	0.003	0.86	0.0	0.05	15.41	0.00	2.184	19.64	0.38	2.0	98.0	0.0	0.18	2.74	0.66	0.83	0.01	17628	2240	4	0	0	0	0	logfile
✔	7B6X	12057	2022-07-03	2020-12-08	3.6	2.59	—	2.5	0.008	1.06	0.0	0.06	14.17	0.01	2.035	44.50	0.09	13.3	86.7	0.0	-2.77	0.75	0.72	0.42	2.5	0.005	0.82	0.0	0.05	16.16	0.01	2.100	26.21	0.60	7.7	92.2	0.1	-1.11	1.37	0.75	0.71	0.02	10470	1290	8	0	0	0	0	logfile
✔	7oCK	12809	2022-07-05	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	36.55	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.6	0.008	1.16	0.0	0.05	16.93	0.01	1.998	42.78	0.47	6.0	93.8	0.1	-1.34	1.33	0.86	0.62	0.03	28276	3666	12	0	0	0	0	logfile
✔	6A7F	6993	2022-07-03	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.72	0.0	0.04	17.88	0.00	2.141	15.46	0.41	0.7	99.3	0.0	2.04	2.05	0.60	0.87	0.03	10830	1410	30	0	0	0	0	logfile
✔	6VQU	21357	2022-07-04	2020-02-05	3.88	4.99	3.94	4.1	0.007	0.94	0.0	0.06	14.62	0.01	2.276	5.25	1.70	3.4	96.6	0.0	-2.26	0.73	0.86	0.46	4.1	0.004	0.76	0.0	0.04	14.93	0.00	2.146	14.46	0.21	2.4	97.6	0.0	1.83	1.06	0.73	0.88	0.06	9156	1178	2	0	0	0	0	logfile

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