Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TGN	10499	2021-01-05	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.003	0.76	0.0	0.04	13.68	0.00	2.381	7.38	0.00	2.3	97.7	0.0	0.43	1.77	0.53	0.81	-0.78	672	88	1	0	0	0	0	logfile
✔	6C9K	7437	2021-01-07	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	0.33	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.002	0.54	0.0	0.04	13.25	0.00	2.004	12.35	0.00	1.8	98.2	0.0	3.59	0.93	0.78	0.58	-0.27	37632	4923	24	0	0	0	0	logfile
✔	6A7F	6993	2021-01-05	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.003	0.64	0.0	0.04	14.19	0.00	2.274	12.37	0.00	0.3	99.7	0.0	2.53	2.06	0.59	0.85	-0.22	10830	1410	30	0	0	0	0	logfile
✔	6KKR	0701	2021-01-05	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.85	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.65	0.0	0.04	10.68	0.00	2.160	8.87	0.00	3.3	96.7	0.0	1.24	1.65	0.11	0.09	-0.21	8416	1074	4	0	24	0	0	logfile
✔	6F1Z	4172	2021-01-05	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	11.67	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.4	0.003	0.69	0.0	0.05	14.09	0.01	2.067	22.17	0.00	8.2	91.8	0.0	-1.04	1.40	0.67	0.73	-0.09	2138	265	4	0	0	0	0	logfile
✔	6TUP	10593	2021-01-06	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.3	0.025	1.99	0.0	0.19	25.49	0.01	0.963	94.99	0.00	2.9	97.1	0.0	-3.02	8.44	0.56	0.60	-0.04	22400	2300	100	300	0	0	0	logfile
✔	6UMM	20820	2021-01-06	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.69	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.003	0.69	0.0	0.04	12.27	0.00	2.091	16.39	0.00	3.0	97.0	0.0	1.31	1.24	0.62	0.82	0.01	23658	3184	10	0	0	0	0	logfile
✔	6VoC	21260	2021-01-12	2020-01-30	3.1	3.49	—	20.0	0.006	0.90	0.0	0.06	8.74	0.01	0.163	459.01	0.00	1.9	98.1	0.0	-1.94	0.19	0.06	0.07	3.2	0.021	3.00	492.0	0.15	17.70	0.01	1.369	190.59	0.04	29.4	67.4	3.1	-5.84	7.93	0.26	0.12	0.01	214200	28560	180	0	0	0	0	logfile
✔	5L3P	4001	2021-01-13	2016-05-24	3.7	4.66	—	16.0	0.006	0.62	0.0	0.19	12.29	0.02	2.115	7.15	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	4.0	0.005	1.07	0.0	0.05	19.89	0.01	1.682	50.36	0.04	12.0	87.4	0.7	-3.21	3.82	0.73	0.54	0.06	149606	6419	58	4704	76	0	0	logfile
✔	6D9J	7836	2021-01-15	2018-04-30	3.2	9.32	4.90	4.8	0.003	0.79	0.0	0.05	15.21	0.01	0.444	5.63	0.03	4.7	95.3	0.0	-4.02	0.93	0.80	0.18	4.8	0.003	0.65	0.0	0.03	17.88	0.00	1.969	23.31	0.03	6.0	94.0	0.0	-1.45	1.99	0.95	0.85	0.07	227188	12745	90	5838	6	0	0	logfile
✔	5AJ0	2875	2021-01-13	2015-02-19	3.5	11.12	—	—	0.011	1.61	31.0	0.09	16.14	0.01	0.414	42.35	8.00	5.7	89.8	4.5	0.77	0.00	0.00	0.09	—	0.002	0.49	0.0	0.03	14.29	0.00	2.038	10.20	0.00	5.8	93.5	0.7	0.52	1.52	0.00	0.00	0.13	218559	11738	106	5776	355	0	0	logfile
✔	6NPY	0476	2021-01-05	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.65	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.003	0.80	0.0	0.04	14.95	0.00	2.186	12.70	0.00	9.9	90.1	0.0	-1.99	1.16	0.78	0.68	0.14	7586	965	3	0	1	0	0	logfile
✔	6CXC	7774	2021-01-06	2018-04-02	3.9	4.14	—	4.0	0.006	1.03	0.0	0.06	10.95	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.007	0.95	0.0	0.05	13.41	0.01	1.980	30.14	0.00	9.3	90.7	0.0	-2.50	2.18	0.70	0.72	0.19	15196	1945	18	0	6	0	0	logfile
✔	6MDo	9102	2021-01-07	2018-09-04	3.9	5.46	—	4.2	0.015	1.44	0.0	0.11	13.31	0.01	2.012	6.67	0.16	0.3	99.6	0.0	-3.28	0.79	0.68	0.38	4.2	0.003	0.63	0.0	0.08	12.59	0.00	1.952	14.09	0.00	5.6	94.4	0.0	-0.70	1.62	0.87	0.83	0.19	45373	2843	13	0	11	0	22858	logfile
✔	5ZEP	6921	2021-01-13	2018-02-27	3.4	5.11	—	4.5	0.010	1.18	5.0	0.06	16.72	0.01	1.089	21.05	3.06	8.5	90.3	1.3	-3.96	0.70	0.53	0.11	4.5	0.005	0.75	0.0	0.04	17.57	0.01	1.957	34.44	0.04	9.0	90.8	0.2	-1.65	3.12	0.89	0.83	0.20	152451	6193	58	4802	262	0	0	logfile
✔	6Qi8	4552	2021-01-05	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.7	0.005	0.88	0.0	0.04	14.67	0.00	2.118	13.20	0.00	7.1	92.9	0.0	-2.24	2.32	0.32	0.23	0.21	14789	1907	12	0	6	0	0	logfile
✔	6F1Y	4171	2021-01-05	2017-11-23	3.4	4.18	—	3.6	0.011	1.94	0.0	0.09	11.72	0.01	2.069	14.25	0.74	17.2	82.6	0.2	-4.92	0.50	0.74	0.93	3.5	0.004	0.79	0.0	0.04	13.31	0.00	2.165	14.13	0.00	10.2	89.8	0.0	-0.91	2.20	0.50	0.74	0.21	4316	472	2	0	111	0	0	logfile
✔	6FLQ	4275	2021-01-06	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.7	0.003	0.80	0.0	0.04	15.22	0.01	2.017	14.84	0.00	8.9	91.1	0.1	-1.89	2.31	0.29	0.24	0.22	30201	3868	10	91	3	0	0	logfile
✔	6MiX	9132	2021-01-07	2018-09-20	3.6	4.57	—	14.0	0.007	1.19	0.0	0.07	16.40	0.01	2.212	9.71	2.30	14.6	85.0	0.4	-5.69	-0.03	0.00	0.22	4.6	0.004	0.83	0.0	0.04	14.64	0.01	2.076	13.90	0.00	11.8	88.2	0.0	-2.41	2.43	0.00	0.09	0.22	43120	5348	4	0	0	0	0	logfile
✔	3JCE	6550	2021-01-14	2015-12-01	3.2	4.36	—	14.0	0.008	0.88	0.0	0.04	14.83	0.00	1.106	32.35	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	3.1	0.005	1.04	0.0	0.05	19.22	0.01	1.754	43.18	0.02	13.0	85.8	1.2	-3.26	2.28	0.72	0.45	0.23	154017	6546	59	4797	3	0	0	logfile

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