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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6TGN | 10499 | 2021-01-05 | 2019-11-17 | 3.9 | 3.83 | — | 4.0 | 0.010 | 1.73 | 0.0 | 0.12 | 11.93 | 0.01 | 2.161 | 5.17 | 1.39 | 4.7 | 95.3 | 0.0 | -3.57 | 0.54 | 0.90 | 1.73 | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 13.68 | 0.00 | 2.381 | 7.38 | 0.00 | 2.3 | 97.7 | 0.0 | 0.43 | 1.77 | 0.53 | 0.81 | -0.78 | 672 | 88 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6C9K | 7437 | 2021-01-07 | 2018-01-26 | 3.49 | 5.32 | — | 5.0 | 0.016 | 1.08 | 0.0 | 0.07 | 11.33 | 0.01 | 2.388 | 0.33 | 0.00 | 0.6 | 99.4 | 0.0 | 1.74 | 0.55 | 0.28 | 0.81 | 5.0 | 0.002 | 0.54 | 0.0 | 0.04 | 13.25 | 0.00 | 2.004 | 12.35 | 0.00 | 1.8 | 98.2 | 0.0 | 3.59 | 0.93 | 0.78 | 0.58 | -0.27 | 37632 | 4923 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6A7F | 6993 | 2021-01-05 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.003 | 0.64 | 0.0 | 0.04 | 14.19 | 0.00 | 2.274 | 12.37 | 0.00 | 0.3 | 99.7 | 0.0 | 2.53 | 2.06 | 0.59 | 0.85 | -0.22 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KKR | 0701 | 2021-01-05 | 2019-07-27 | 2.9 | 2.91 | — | 20.0 | 0.008 | 1.10 | 0.0 | 0.06 | 10.85 | 0.01 | 2.348 | 3.23 | 0.23 | 3.9 | 96.1 | 0.0 | -3.53 | 0.05 | 0.00 | -0.07 | 2.8 | 0.003 | 0.65 | 0.0 | 0.04 | 10.68 | 0.00 | 2.160 | 8.87 | 0.00 | 3.3 | 96.7 | 0.0 | 1.24 | 1.65 | 0.11 | 0.09 | -0.21 | 8416 | 1074 | 4 | 0 | 24 | 0 | 0 | logfile |
✔ | 6F1Z | 4172 | 2021-01-05 | 2017-11-23 | 3.4 | 4.16 | — | 3.4 | 0.004 | 0.97 | 0.0 | 0.06 | 11.17 | 0.01 | 2.264 | 11.67 | 0.81 | 8.6 | 91.4 | 0.0 | -4.21 | 0.64 | 0.68 | -1.41 | 3.4 | 0.003 | 0.69 | 0.0 | 0.05 | 14.09 | 0.01 | 2.067 | 22.17 | 0.00 | 8.2 | 91.8 | 0.0 | -1.04 | 1.40 | 0.67 | 0.73 | -0.09 | 2138 | 265 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TUP | 10593 | 2021-01-06 | 2020-01-08 | 3.2 | 3.52 | — | 3.3 | 0.011 | 1.02 | 0.0 | 0.05 | 21.23 | 0.00 | 0.032 | 54.60 | 0.00 | 0.0 | 100.0 | 0.0 | -7.04 | 0.49 | 0.47 | 1.19 | 3.3 | 0.025 | 1.99 | 0.0 | 0.19 | 25.49 | 0.01 | 0.963 | 94.99 | 0.00 | 2.9 | 97.1 | 0.0 | -3.02 | 8.44 | 0.56 | 0.60 | -0.04 | 22400 | 2300 | 100 | 300 | 0 | 0 | 0 | logfile |
✔ | 6UMM | 20820 | 2021-01-06 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.69 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 12.27 | 0.00 | 2.091 | 16.39 | 0.00 | 3.0 | 97.0 | 0.0 | 1.31 | 1.24 | 0.62 | 0.82 | 0.01 | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VoC | 21260 | 2021-01-12 | 2020-01-30 | 3.1 | 3.49 | — | 20.0 | 0.006 | 0.90 | 0.0 | 0.06 | 8.74 | 0.01 | 0.163 | 459.01 | 0.00 | 1.9 | 98.1 | 0.0 | -1.94 | 0.19 | 0.06 | 0.07 | 3.2 | 0.021 | 3.00 | 492.0 | 0.15 | 17.70 | 0.01 | 1.369 | 190.59 | 0.04 | 29.4 | 67.4 | 3.1 | -5.84 | 7.93 | 0.26 | 0.12 | 0.01 | 214200 | 28560 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L3P | 4001 | 2021-01-13 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.62 | 0.0 | 0.19 | 12.29 | 0.02 | 2.115 | 7.15 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 4.0 | 0.005 | 1.07 | 0.0 | 0.05 | 19.89 | 0.01 | 1.682 | 50.36 | 0.04 | 12.0 | 87.4 | 0.7 | -3.21 | 3.82 | 0.73 | 0.54 | 0.06 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✔ | 6D9J | 7836 | 2021-01-15 | 2018-04-30 | 3.2 | 9.32 | 4.90 | 4.8 | 0.003 | 0.79 | 0.0 | 0.05 | 15.21 | 0.01 | 0.444 | 5.63 | 0.03 | 4.7 | 95.3 | 0.0 | -4.02 | 0.93 | 0.80 | 0.18 | 4.8 | 0.003 | 0.65 | 0.0 | 0.03 | 17.88 | 0.00 | 1.969 | 23.31 | 0.03 | 6.0 | 94.0 | 0.0 | -1.45 | 1.99 | 0.95 | 0.85 | 0.07 | 227188 | 12745 | 90 | 5838 | 6 | 0 | 0 | logfile |
✔ | 5AJ0 | 2875 | 2021-01-13 | 2015-02-19 | 3.5 | 11.12 | — | — | 0.011 | 1.61 | 31.0 | 0.09 | 16.14 | 0.01 | 0.414 | 42.35 | 8.00 | 5.7 | 89.8 | 4.5 | 0.77 | 0.00 | 0.00 | 0.09 | — | 0.002 | 0.49 | 0.0 | 0.03 | 14.29 | 0.00 | 2.038 | 10.20 | 0.00 | 5.8 | 93.5 | 0.7 | 0.52 | 1.52 | 0.00 | 0.00 | 0.13 | 218559 | 11738 | 106 | 5776 | 355 | 0 | 0 | logfile |
✔ | 6NPY | 0476 | 2021-01-05 | 2019-01-18 | 3.8 | 4.03 | — | 3.8 | 0.006 | 1.16 | 0.0 | 0.06 | 16.44 | 0.01 | 2.244 | 8.65 | 0.84 | 14.6 | 85.3 | 0.1 | -4.90 | 0.79 | 0.71 | 0.51 | 3.8 | 0.003 | 0.80 | 0.0 | 0.04 | 14.95 | 0.00 | 2.186 | 12.70 | 0.00 | 9.9 | 90.1 | 0.0 | -1.99 | 1.16 | 0.78 | 0.68 | 0.14 | 7586 | 965 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6CXC | 7774 | 2021-01-06 | 2018-04-02 | 3.9 | 4.14 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.06 | 10.95 | 0.01 | 2.198 | 9.05 | 0.29 | 6.2 | 93.8 | 0.0 | -4.06 | 0.71 | 0.71 | 0.12 | 4.0 | 0.007 | 0.95 | 0.0 | 0.05 | 13.41 | 0.01 | 1.980 | 30.14 | 0.00 | 9.3 | 90.7 | 0.0 | -2.50 | 2.18 | 0.70 | 0.72 | 0.19 | 15196 | 1945 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 6MDo | 9102 | 2021-01-07 | 2018-09-04 | 3.9 | 5.46 | — | 4.2 | 0.015 | 1.44 | 0.0 | 0.11 | 13.31 | 0.01 | 2.012 | 6.67 | 0.16 | 0.3 | 99.6 | 0.0 | -3.28 | 0.79 | 0.68 | 0.38 | 4.2 | 0.003 | 0.63 | 0.0 | 0.08 | 12.59 | 0.00 | 1.952 | 14.09 | 0.00 | 5.6 | 94.4 | 0.0 | -0.70 | 1.62 | 0.87 | 0.83 | 0.19 | 45373 | 2843 | 13 | 0 | 11 | 0 | 22858 | logfile |
✔ | 5ZEP | 6921 | 2021-01-13 | 2018-02-27 | 3.4 | 5.11 | — | 4.5 | 0.010 | 1.18 | 5.0 | 0.06 | 16.72 | 0.01 | 1.089 | 21.05 | 3.06 | 8.5 | 90.3 | 1.3 | -3.96 | 0.70 | 0.53 | 0.11 | 4.5 | 0.005 | 0.75 | 0.0 | 0.04 | 17.57 | 0.01 | 1.957 | 34.44 | 0.04 | 9.0 | 90.8 | 0.2 | -1.65 | 3.12 | 0.89 | 0.83 | 0.20 | 152451 | 6193 | 58 | 4802 | 262 | 0 | 0 | logfile |
✔ | 6Qi8 | 4552 | 2021-01-05 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.27 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | 9.7 | 0.005 | 0.88 | 0.0 | 0.04 | 14.67 | 0.00 | 2.118 | 13.20 | 0.00 | 7.1 | 92.9 | 0.0 | -2.24 | 2.32 | 0.32 | 0.23 | 0.21 | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6F1Y | 4171 | 2021-01-05 | 2017-11-23 | 3.4 | 4.18 | — | 3.6 | 0.011 | 1.94 | 0.0 | 0.09 | 11.72 | 0.01 | 2.069 | 14.25 | 0.74 | 17.2 | 82.6 | 0.2 | -4.92 | 0.50 | 0.74 | 0.93 | 3.5 | 0.004 | 0.79 | 0.0 | 0.04 | 13.31 | 0.00 | 2.165 | 14.13 | 0.00 | 10.2 | 89.8 | 0.0 | -0.91 | 2.20 | 0.50 | 0.74 | 0.21 | 4316 | 472 | 2 | 0 | 111 | 0 | 0 | logfile |
✔ | 6FLQ | 4275 | 2021-01-06 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 14.73 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.7 | 0.003 | 0.80 | 0.0 | 0.04 | 15.22 | 0.01 | 2.017 | 14.84 | 0.00 | 8.9 | 91.1 | 0.1 | -1.89 | 2.31 | 0.29 | 0.24 | 0.22 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 6MiX | 9132 | 2021-01-07 | 2018-09-20 | 3.6 | 4.57 | — | 14.0 | 0.007 | 1.19 | 0.0 | 0.07 | 16.40 | 0.01 | 2.212 | 9.71 | 2.30 | 14.6 | 85.0 | 0.4 | -5.69 | -0.03 | 0.00 | 0.22 | 4.6 | 0.004 | 0.83 | 0.0 | 0.04 | 14.64 | 0.01 | 2.076 | 13.90 | 0.00 | 11.8 | 88.2 | 0.0 | -2.41 | 2.43 | 0.00 | 0.09 | 0.22 | 43120 | 5348 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCE | 6550 | 2021-01-14 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 14.83 | 0.00 | 1.106 | 32.35 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.1 | 0.005 | 1.04 | 0.0 | 0.05 | 19.22 | 0.01 | 1.754 | 43.18 | 0.02 | 13.0 | 85.8 | 1.2 | -3.26 | 2.28 | 0.72 | 0.45 | 0.23 | 154017 | 6546 | 59 | 4797 | 3 | 0 | 0 | logfile |