Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RJU	4906	2021-05-03	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.67	0.0	0.03	16.11	0.00	2.231	7.54	0.00	7.8	92.2	0.0	-1.37	1.76	0.29	0.09	-2.78	1992	131	1	0	0	0	997	logfile
✔	6F1Z	4172	2021-05-03	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	11.67	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.3	0.004	0.93	0.0	0.05	16.84	0.00	2.060	28.70	0.81	7.8	92.2	0.0	-1.75	1.42	0.67	0.77	-0.90	2138	265	4	0	0	0	0	logfile
✔	6SXA	10337	2021-05-03	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	14.89	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.79	0.0	0.04	15.15	0.00	2.262	10.66	0.00	5.1	94.7	0.1	0.14	1.10	0.91	0.85	-0.48	7014	943	2	0	0	0	0	logfile
✔	6QYM	4679	2021-05-05	2019-03-09	3.6	3.25	—	4.0	0.007	0.89	0.0	0.05	9.66	0.01	2.201	8.77	0.00	6.5	93.5	0.0	-4.63	0.62	0.60	0.02	3.5	0.005	1.00	0.0	0.05	17.61	0.01	2.060	29.73	1.35	5.5	94.5	0.0	-1.10	2.40	0.65	0.62	-0.33	26880	3360	12	0	0	0	0	logfile
✔	6C9K	7437	2021-05-06	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	0.33	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.004	0.64	0.0	0.04	15.04	0.00	2.163	18.47	0.15	2.2	97.8	0.0	3.24	0.95	0.81	0.62	-0.21	37632	4923	24	0	0	0	0	logfile
✔	6A7F	6993	2021-05-04	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.003	0.71	0.0	0.04	18.33	0.00	2.197	15.41	0.08	1.4	98.6	0.0	2.16	2.07	0.59	0.85	-0.10	10830	1410	30	0	0	0	0	logfile
✔	6EK0	3883	2021-05-13	2017-09-24	2.9	3.27	—	40.0	0.012	1.17	0.0	0.06	16.22	0.03	0.883	4.05	0.81	9.4	90.4	0.3	-5.00	0.02	0.00	0.01	3.2	0.003	0.85	0.0	0.04	17.81	0.01	1.161	18.81	2.80	10.0	90.0	0.0	-2.46	2.06	0.13	0.18	-0.07	219596	11719	128	5861	415	61	0	logfile
✔	5VA1	8650	2021-05-04	2017-03-24	3.7	5.99	—	4.4	0.008	1.02	0.0	0.06	11.84	0.00	1.715	7.81	1.30	4.6	95.4	0.0	-3.52	0.65	0.78	0.25	4.5	0.004	0.92	2.0	0.05	15.78	0.00	2.096	22.99	0.38	2.6	97.4	0.0	-0.16	2.77	0.66	0.83	-0.06	17628	2240	4	0	0	0	0	logfile
✔	6PMJ	20395	2021-05-07	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	10.86	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.004	0.76	0.0	0.04	17.71	0.01	1.812	23.07	0.48	9.3	90.5	0.1	-2.18	1.83	0.89	0.75	-0.03	57984	3453	10	110	4	0	28609	logfile
✔	6XSS	22305	2021-05-03	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.15	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.004	0.86	0.0	0.04	17.64	0.00	2.286	17.42	0.61	1.2	98.8	0.0	2.12	2.01	0.75	0.80	-0.03	8048	1040	4	0	0	0	0	logfile
✔	6Qi8	4552	2021-05-04	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.81	0.0	0.04	17.45	0.00	2.201	11.52	0.06	5.0	95.0	0.0	-1.61	1.62	0.31	0.21	0.00	14789	1907	12	0	6	0	0	logfile
✔	6oiG	20077	2021-05-07	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.41	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	1.01	6.0	0.05	18.80	0.01	1.442	33.72	1.00	13.5	86.3	0.2	-2.92	3.16	0.89	0.84	0.00	129140	6757	48	3522	116	0	0	logfile
✔	5GAK	3227	2021-05-07	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.07	20.85	0.01	0.816	23.80	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.004	0.94	0.0	0.05	20.72	0.01	1.968	28.60	0.40	11.3	88.3	0.4	-3.21	2.47	0.36	0.30	0.01	128975	6434	50	3597	234	0	0	logfile
✔	6D9J	7836	2021-05-14	2018-04-30	3.2	9.32	4.90	4.8	0.003	0.79	0.0	0.05	15.21	0.01	0.444	5.63	0.03	4.7	95.3	0.0	-4.02	0.93	0.80	0.18	4.8	0.003	0.70	0.0	0.04	18.97	0.00	1.929	31.05	0.24	6.4	93.6	0.0	-1.72	2.05	0.94	0.86	0.05	227188	12745	90	5838	6	0	0	logfile
✔	5L3P	4001	2021-05-06	2016-05-24	3.7	4.66	—	16.0	0.006	0.61	0.0	0.19	12.36	0.02	2.115	7.15	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	4.0	0.004	0.97	1.0	0.04	19.57	0.01	1.828	40.37	0.64	10.1	89.3	0.6	-2.77	2.98	0.73	0.53	0.05	149606	6419	58	4704	76	0	0	logfile
✔	7CR7	30448	2021-05-04	2020-08-12	3.7	3.92	—	3.8	0.008	0.82	0.0	0.04	14.02	0.00	1.825	91.45	0.00	5.6	94.2	0.2	-3.89	0.64	0.69	0.59	3.8	0.004	0.94	0.0	0.05	17.58	0.00	2.059	20.94	0.59	4.1	95.9	0.0	0.13	2.17	0.63	0.69	0.05	16136	1988	12	0	4	0	0	logfile
✔	5VA2	8651	2021-05-04	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.07	1.08	7.7	90.7	1.6	-3.86	0.64	0.73	-0.32	4.3	0.004	1.01	0.0	0.05	16.25	0.00	2.061	24.86	0.27	4.5	95.1	0.5	-1.14	1.99	0.67	0.83	0.06	17576	2232	4	0	0	0	0	logfile
✔	6MDo	9102	2021-05-06	2018-09-04	3.9	5.46	—	4.2	0.015	1.44	0.0	0.11	13.31	0.01	2.012	6.67	0.16	0.3	99.6	0.0	-3.28	0.79	0.68	0.38	4.2	0.006	0.77	0.0	0.08	14.10	0.00	1.906	25.24	0.37	8.4	91.6	0.0	-1.90	1.62	0.87	0.84	0.06	45373	2843	13	0	11	0	22858	logfile
✔	6Z3A	11055	2021-05-06	2020-05-19	3.8	4.08	—	3.8	0.007	1.23	2.0	0.06	12.44	0.01	1.678	10.95	1.08	11.1	88.8	0.1	-4.47	0.78	0.75	0.21	3.8	0.004	1.00	0.0	0.05	15.94	0.01	1.991	22.89	0.31	8.8	91.2	0.0	-2.04	2.35	0.79	0.75	0.07	46142	5730	6	0	4	0	0	logfile
✔	6iP1	9697	2021-05-04	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	7.91	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.93	0.0	0.05	18.49	0.01	2.067	20.31	1.27	8.0	92.0	0.0	-0.70	4.15	0.62	0.76	0.08	11245	1420	8	0	0	0	0	logfile

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